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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065565 ID=TCONS_00065565|Name=TCONS_00065565|organism=Clytia hemisphaerica|type=transcript|length=1903bp
cGTCAAAGTGCTTACCTTCTCTTTCGCGGACCAAGATTAACTGATCTTCC
ATGAAAATGATTAACTGATCTTCCTATAAATAGATCGTGCCCAACTGAAT
GACTAACTAACTTTATGGTTTTATTACGTATTTTTCGGTTTGGAAATGAC
CAGTTAATTCATCCTCCGGGAAAGAGAATTTTAATCACTTTGACggtaat
aaaaagaaatatacaaaaattggAAGAAGAAGAACATTAGAAAAACTACA
GTTCACCAACACTGAAATCATCACGTCCGAAGAACAACAAATATATTGTA
ATCAAGAAATTAACACCATACCCTAACACACCAAACGTATAAAATCCCAC
GTGTTGGAATAAAAATCCGCCTATGGTGGGCGCCACCGATCTAATACTGG
AATGGGTGCAAAGTGTCACGCCCAGGGCGGATCCTGTCTCCTCTTTCTTC
ACGACTTTTGTTATGATAGACGTTGTCACGATATGTAGTAAAGAACCGCC
AACAGTCAAAGGTATACACGTCAAACAAAACACATATATACTTTCCGCGA
TAATGAGATATAAGAATCCAACAGCCATGGTAATAGTTGAGATAATAATT
AATGGGCCGTCGCTCACGTGACGGCAGAATAAACCAATCAGGTAGCCTTG
TGTGATCATGCCGACCACTCCAAGATAGGATAACACCATACCGTTCTCCT
TCGGTGACAGTTTATAATAATCCATAAGGAGGAGTGTAAACATGGCGGAT
AAAACAGAGAATGGAAAAGCCGTAATGATTTTGATAGTCAGTAAGTAAAT
CATATGTTTTCGTTTCGTTACAGCTACTAATTCACCGATTCCTAAGAAgg
atttctttttctcttcttctttacattttattttctcTAACGATTCTTCG
TTTTTACGTTTAGGCTCTAAATGTTCACGAATGTGTGTCGTGTCTCGTGG
AATCAAGGCTAAAGTTACCAATATACATAAAACGTCTACGACTATAGCAA
CGAAGAATGGAATTCGATTTCCAAAGTGTGACGTAATGAATCCACCAATG
CCGGAACCGACAATCATACCCAGTCCACTGGAAACGCCCAATTTTCCCAT
CATGTCCGCCCGTCCTTCAGGGTAAGTGATATCACTGATTATAATATACA
TACTTTGTAAAGGATGAGCTGCTATTCTCGGCACCTTAGCTAAGAAGAGC
ATTGGTATTGTCCGAGCCACGCCCAACATAAAGTAACTGATCATAAGCAT
TACAAAAGCGATTATAAGCGTTAAACGCCCTCCATAGATATCTGACGCCC
AACCACAAATGGGTCCGCCAATCAGATTCATGATAGCATGAAATGATATT
GTATAACCATATACTTGCGGGTTGACGCCCAAAGATTTTGTAAGATATGG
GTACGAAGTGTTTTGTATAAAGAAGCCCACTGATTGGACGAAAGCTGCCA
CGTGTAGTGCGATGAATATTAAAGTGATTTTTCGTTGAAAATGAGGCTCG
ATTTGTGTGTCTTCATCATCTATCGATGCAATCGTCTTTTTAACAAAGCt
atgaaattttcgttttttggctGTGAAATCGGATTTCGAGTTCATGTTGT
TTCCATTGGCTGTATTGCCTGAATCAGATGTCTGTTTTTCTTTCGCTGGC
ATTGTGTTTCCcgtcttgaaaaaaaatttcttatattAATCTTTTTACTC
TCCAAGCGAGAGATACTAGGTTGCCATTTCTTCAAATTATGTATGCCCAA
TTTTTGAATCTTCTTTGCTATTGCTTAATTTTCTCAAAGCCTCTCctaat
tgtttatttttggtCAGCCACAGATTCAATTTTCCAATATACCGGTAAAA
ATattacaatttttaaaaattcatttcaatataGAAATCTGCATGTTCGA
AAC Run BLAST on NCBI transcript from alignment at scaffold_440:366670..368572+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065565 ID=TCONS_00065565|Name=TCONS_00065565|organism=Clytia hemisphaerica|type=transcript|length=1903bp|location=Sequence derived from alignment at scaffold_440:366670..368572+ (Clytia hemisphaerica)
cGTCAAAGTGCTTACCTTCTCTTTCGCGGACCAAGATTAACTGATCTTCC
ATGAAAATGATTAACTGATCTTCCTATAAATAGATCGTGCCCAACTGAAT
GACTAACTAACTTTATGGTTTTATTACGTATTTTTCGGTTTGGAAATGAC
CAGTTAATTCATCCTCCGGGAAAGAGAATTTTAATCACTTTGACggtaat
aaaaagaaatatacaaaaattggAAGAAGAAGAACATTAGAAAAACTACA
GTTCACCAACACTGAAATCATCACGTCCGAAGAACAACAAATATATTGTA
ATCAAGAAATTAACACCATACCCTAACACACCAAACGTATAAAATCCCAC
GTGTTGGAATAAAAATCCGCCTATGGTGGGCGCCACCGATCTAATACTGG
AATGGGTGCAAAGTGTCACGCCCAGGGCGGATCCTGTCTCCTCTTTCTTC
ACGACTTTTGTTATGATAGACGTTGTCACGATATGTAGTAAAGAACCGCC
AACAGTCAAAGGTATACACGTCAAACAAAACACATATATACTTTCCGCGA
TAATGAGATATAAGAATCCAACAGCCATGGTAATAGTTGAGATAATAATT
AATGGGCCGTCGCTCACGTGACGGCAGAATAAACCAATCAGGTAGCCTTG
TGTGATCATGCCGACCACTCCAAGATAGGATAACACCATACCGTTCTCCT
TCGGTGACAGTTTATAATAATCCATAAGGAGGAGTGTAAACATGGCGGAT
AAAACAGAGAATGGAAAAGCCGTAATGATTTTGATAGTCAGTAAGTAAAT
CATATGTTTTCGTTTCGTTACAGCTACTAATTCACCGATTCCTAAGAAgg
atttctttttctcttcttctttacattttattttctcTAACGATTCTTCG
TTTTTACGTTTAGGCTCTAAATGTTCACGAATGTGTGTCGTGTCTCGTGG
AATCAAGGCTAAAGTTACCAATATACATAAAACGTCTACGACTATAGCAA
CGAAGAATGGAATTCGATTTCCAAAGTGTGACGTAATGAATCCACCAATG
CCGGAACCGACAATCATACCCAGTCCACTGGAAACGCCCAATTTTCCCAT
CATGTCCGCCCGTCCTTCAGGGTAAGTGATATCACTGATTATAATATACA
TACTTTGTAAAGGATGAGCTGCTATTCTCGGCACCTTAGCTAAGAAGAGC
ATTGGTATTGTCCGAGCCACGCCCAACATAAAGTAACTGATCATAAGCAT
TACAAAAGCGATTATAAGCGTTAAACGCCCTCCATAGATATCTGACGCCC
AACCACAAATGGGTCCGCCAATCAGATTCATGATAGCATGAAATGATATT
GTATAACCATATACTTGCGGGTTGACGCCCAAAGATTTTGTAAGATATGG
GTACGAAGTGTTTTGTATAAAGAAGCCCACTGATTGGACGAAAGCTGCCA
CGTGTAGTGCGATGAATATTAAAGTGATTTTTCGTTGAAAATGAGGCTCG
ATTTGTGTGTCTTCATCATCTATCGATGCAATCGTCTTTTTAACAAAGCt
atgaaattttcgttttttggctGTGAAATCGGATTTCGAGTTCATGTTGT
TTCCATTGGCTGTATTGCCTGAATCAGATGTCTGTTTTTCTTTCGCTGGC
ATTGTGTTTCCcgtcttgaaaaaaaatttcttatattAATCTTTTTACTC
TCCAAGCGAGAGATACTAGGTTGCCATTTCTTCAAATTATGTATGCCCAA
TTTTTGAATCTTCTTTGCTATTGCTTAATTTTCTCAAAGCCTCTCctaat
tgtttatttttggtCAGCCACAGATTCAATTTTCCAATATACCGGTAAAA
ATattacaatttttaaaaattcatttcaatataGAAATCTGCATGTTCGA
AAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065565-exon-scaffold_440-1491911889:366670..368572 | TCONS_00065565-exon-scaffold_440-1491911889:366670..368572 | Clytia hemisphaerica | exon |
| TCONS_00065565-exon-scaffold_440-1510915933:366670..368572 | TCONS_00065565-exon-scaffold_440-1510915933:366670..368572 | Clytia hemisphaerica | exon |
| TCONS_00065565-exon-scaffold_440-1575043694:366670..368572 | TCONS_00065565-exon-scaffold_440-1575043694:366670..368572 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_440 | supercontig | scaffold_440:366670..368572 + |
Blast
BLAST of TCONS_00065565 vs. Swiss-Prot (Human)
Match: S22AI (Solute carrier family 22 member 18 OS=Homo sapiens GN=SLC22A18 PE=1 SV=3) HSP 1 Score: 120.939 bits (302), Expect = 3.115e-29 Identity = 103/394 (26.14%), Postives = 200/394 (50.76%), Query Frame = -3
Query: 288 HVAAFVQSVGFFIQNTSYPYLTKSLGVNPQVYGYTISFHAIMNLIGGPICGWASDIYGGRLTLIIAFVMLMISYFMLGVAR--TIP---MLFLAKVPRIAAHPLQSMYIIISDITYPEGRADMMGKXXXXXXXXXXXXXXXXGFITSHFGNRIPFFVAIVVDVLCILVTLALIPRDTTHIREHLEPKRKNXXXXXXXXXXXXXXXKSFLGIGELVAVTKRKHMIYLLTIKIITAFPFSVLSAMFTLLLMDYYKLSPKENGMVLSYLGVVGMITQGYLIGLFCRHVSDGPLIIISTITMAVGFLYLIIAESIYVFCLTCIPLTVGGSLLHIVTTSIITKVVKKEETGSALGVTLCTHSSIRSVAPTIGGFLFQHVGFYTFGVLGYGVNFLITIYL 1454
+V A + F+Q + PYL++ LG++ +GY + ++ L+GGP+ G +D G R L ++F+ + Y +L A +P +LF +++P H L + ++I+D++ PE R +G+LG+ G+G+I+GS +GG + S +G + P +A + +L +++ IP T + + S + + ++ + + + +K+ + P + MF+++ MD+++L + G ++S+ G++ M+TQG +IG H S+ L+ S + V L + S++ FCL L L++VT S++ K V +TG+ LG+ +R++ PT+GG L++ G FG + +N L+ + L
Sbjct: 30 YVLAATELTCLFMQFSIVPYLSRKLGLDSIAFGYLQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLLFASRLPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYGIQCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRA------------SVFDLKAIASLLRLPDVPRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGLVIGQLSSHFSEEVLLRASVLVFIVVGLAMAWMSSVFHFCLLVPGLVFSLCTLNVVTDSMLIKAVSTSDTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLVL 411
The following BLAST results are available for this feature:
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