TCONS_00065564 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00065564
Unique Name	TCONS_00065564
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2020

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_440:359141..365887+

transcript sequence

>TCONS_00065564 ID=TCONS_00065564|Name=TCONS_00065564|organism=Clytia hemisphaerica|type=transcript|length=2020bp
CCGGTCTTACTGAACTTCCAAATTGTCCAGTTTGTTTAGAACGAATGGAC
GAATCTGTGGCCGGCATATTGACTGTTTTGTGCAATCATTCGTTTCACAA
CGAATGTCTATCTAAATGGCAAGACGACTGTTGTCCAGTTTGTCGGTACC
GACAGACACCTGAAGAAGAGGTCGATCAAACGTGTTTTGAATGTGATGCC
AAAGAGAGCCTTTGGATATGTTTGATTTGTGGATATGTTGGGTGTGGTCG
ATACCAAGAACAACATGCTTTTCAGCATTACAAACAGACGGCACATACAT
TCAGCATGCATCTTGGAAATCAACGTGTTTGGGATTATGCAGGAGATAAC
TATGTTCATCGATTATTACAAAGCAAGGGTGATGGCAAACTTGTGGCTGT
AAACAGTGAAGGAACTGAGatTGACAATGAAAAGGTGGATTCGTTGACTT
TGGAGtaCACCTACCTTTTGACCAACCAACTGGAATCGCAACGTCAATTC
TTTGAGCAGAAAATTGGTTTCCTTGAAAAAGAGGCTTTTGAAAGGATAAC
TAGACTAGAAGAAAACGTTCACACCTCAAGGATACGCAACGAGAAGACTG
AAACAAAGCTGCAATCTGTCGAAAAGGAGAAGAAGAATTTAGAGAAGAAA
TACGAAAATGTTGTAGGAAAAGCCACCAAACTTGGTAAAGAACTAAAAGA
TGAAAAACAAATGAATGAGTTCTTGAGAGTAAATCAGGGTGATTGGTATA
AGAAAGTGTCAGATCTGGAGAAGAGGCTGGTGAACTTGGAAGAGGAGAAA
AATAGACAACTTATTGAACTACAAAGTGAGATCACTGATCTCATGAAACA
CCTGGATTTCCAGTCTGCTATCAACAGTTCCGCTGGATCAGTCAAGGAGG
AGATCCAAGGCGGTCATCTATTCACAGAACAAGGCACACCATCTCCTTCC
AAAGGAGGAGCTAGATCGAAAACCAAAGGTCGCAAAAGGTGATATTGAAC
GCTTTGGTAACTTAAATTTTGCACTTTAAAGTAATTGAAGTTATGGCTCA
ACTTGTTACCAAAAGTATTTAAGCTGCTCTGTCATTGGTCAATAATGAGT
TGACAAGGCATGTCCAGTTACATTGTGATGGTAAACTCTGGTGATCAAAG
TGTATTTGTAAATGATATTCCAAAGACGCACGCGATACTTGCACACTTAA
ATAATGAAGCTATGACATTTTACTGAAAAAGGTTACCCTTTAACAGAGCT
AAGCAATAATACtcaaaaagttttcaatgaAATGAAACGATACAGTATGC
CAATTATGTCCTGGTGAATGAAATTGAAAGCAATAATacataaactcaaa
aagttttcaatgaAATGAAACGATACAGTATGCCAATATGTCCTTGTGAA
TGAAATTGAAAGCAATAATacataaactcaaaaagtatccaataaaatga
aatgataCAGTATGCCAATATGTCCTGGTGAGTGAAATTGAAAGCAATAA
TACATAAACTTGAGGAGCGCTCAATGAAATGAAATCATACAGTATGCCAA
TTATGTCCTGctgaataaaattgaaattgaaatacgTTTACGTTACCTGT
TATGTGATGTACTGTAAATCGATTTATAACAAGAAAATATTGGACAAGAC
TATCCATTTATTGAGTTACTTCAAAACCACGGTACTTCTGGGCACCTTTT
CCAAGGTAATTAATTTTCCTGATGAGTGAGAATATACCGgttgcgccaca
aaaaagtttctctctttgaaattgattttctcgaaatctaaaaatgttaa
aagaaccatgcctattccattggaaagaagaaagataaacttaaattttg
ataggtcatttattgaattcggttcattaaatcaaaagttatgctcaatt
gaataaaaaagttattttcagaaagtgcccgaaaacgttaaaaatcaacc
tatcaaatttttattttaaaactggcAATCACAATAGGCTTAACATGATT
aggagcatttttcagtaact

Run BLAST on NCBI

transcript from alignment at scaffold_440:359141..365887+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00065564 ID=TCONS_00065564|Name=TCONS_00065564|organism=Clytia hemisphaerica|type=transcript|length=6747bp|location=Sequence derived from alignment at scaffold_440:359141..365887+ (Clytia hemisphaerica)
CCGGTCTTACTGAACTTCCAAATTGTCCAGTTTGTTTAGAACGAATGGTA
AGAAGAGCATTTGATATGTCTAACATTTGTCAGAATAATTTAGTAGTTAA
CAGTAGAAACTATCGACCCTTTGACTTTTAACCTACATATAGTGTCAGCT
TTTAAAAAGCACTTATAGTAATGGTATAATGGTACAGCGAAACCATTTTG
TATCTGTTTTGAGGTTGGTCCGAATAGTAATGGTATAATGGTACAGCGAA
ACCATTTTGTATCTGTTTTGAGGTCGGTCCGAATCTACAAAAGAAAAGGG
TTTATGtgaaagttaaaaaattctTGCTAATAATGTTTTCTCATTGCCGT
AGAGACATTTGCAAGCTTTTCTAGAGTTTCAGTTTCTAGAGATGAGCTTT
GAACCACGATATTCTAAATGACTTTCGAGAAACATGCTTGAACTCACGTT
TGTAATGCCCGAGGTcgtcatttttttctagacCAAATCGATTTTCCCTA
CATTCGATTCCCAATGATAGTAACTATTTTAGTTTCTTACAATCATTGTA
TTACCTTCTTCACTCATTTTATTCATAGGACGAATCTGTGGCCGGCATAT
TGACTGTTTTGTGCAATCATTCGTTTCACAACGAATGTCTATCTAAATGG
CAAGACGACTGGTAAACCCATGTTTCTTTCTAAACACGTTATTCCTTTAT
ATCTTTATAACAAGATTGGAAGCGCCAAACCATAATAAAAACTAAGAATT
TAGAGAAGCAATGGTCGAATGGACTAATGTGTTATGTTATGTTAGTTCAA
ACATCTTTAACTTGTCTTTGTTTCTTTCCAGTTGTCCAGTTTGTCGGTAC
CGACAGACACCTGAAGAAGAGGTCGATCAAACGTGTTTTGAATGTGATGC
CAAAGAGGTTGGTAAACTGTTTTCTGTTCCACTTTTTACACATTTCTCGC
TTAGCCAAatttatacaccttttcaaccgtagctgccaattgccgcgcgg
gcatatCCCCCcataaactcgatccaatccttttttgacacctttttcta
ttgtctataggtgcaaaaaaaagactgggacggttttagggtggtaaaaa
atgccGGCGCGGCAATTGgaggctacggtcgaaaaggtgtatttggtTAA
ACTCGAGGATATTCACCTCTCAGCCTGATATCAGACGAGGGAGGGGTCTG
AGTTCCAGGTTATCCCAATAATATACTTTGACGTCTTTCGGCCCTGGTTA
ACTTTAATCTAACTCTTCCTTTAATGCAGTTTTTGGTCTTCGAGGGTTAG
GGGGTAAGTGCATTAAGCAGCCTTAAGAGATGGTTAAGGATTAGAAGTAT
AGTAAACCAAAGGTCGCGTCCCTAATCCTTCTACTTTCGAAATGATTTTG
AAGTTTAGCTTAAAAAGCCCAGACAAAATTTTGTAGTTTATGACAGAGAT
GTGCAAACCACTaagatttaaaaacaatttcttgCTTCTTGTAGAGCCTT
TGGATATGTTTGATTTGTGGATATGTTGGGTGTGGTCGATACCAAGAACA
ACATGCTTTTCAGTAagactttttttattcattttaacTCTGCTTTGATA
CTCGTTAGCCTGATTGTAAGCTAACTTTTTGCTTGTGATCATGATACAAG
AAATATCGAAACGTCaagaatgaacaaaattttgtttttcgtctttactt
ttgtttttgagaaTAATCTGGcccagaagaaaattttttcccaaCACCTT
TCCAAAATTCATCCAACATTCGTCCAACATTTCAATTGctatgttggatg
aaatgttggaatcgtttacctcgGCCTTTACTCGTTAGCCGTGTAAAAAT
AACTTGAAGACGGGGGCTCTTCCGAAAATGGATCTTATTTCGCAGTGTAA
AAATAATTCTTGCAAAATTAGTTTTTAGTCGCAATCTGAACCTTGTGTTT
TACTCTCCATTAGGATAGAGCTCATATATTTTGTTCCCTTTGCCAACACT
GACNGATAGAGCTCATATTTTGTTTCTCTTGCTGACGCTGACAGTGCACT
TTTAGAGTTCTGAAAGATTCTTAAGAGCTGCAACATTAGGTTGGTTGGTC
TAAATACAATAAGAATACCAAACAAACCATAATAAACCATAATACCAAAC
AAATAATAATCTAAGAATTTAAGATCGTGTGTCTAACGGTTAGTCTTTAT
ACTACAGTTATTGACGATGTCATTTTATCAAATACCTATTTTATTTTGTC
GTTTTTCCCAGGCATTACAAACAGACGGCACATACATTCAGCATGCATCT
TGGAAATCAACGTGTTTGGGATTATGCAGGAGGTatacacacaacgttgt
ttcaacgtcaatCTCACGTTCTTAACAAATTCTTTAACATTCaatattca
aaatcaaaatcttaccTATCTACGTCGCTAGGGAAAAGTTCTCTATCTTG
GACACTCTTACATTGAGATTAGAGTtagttttttggtattttattcCTTG
TGCATATTCACTCGGATCAAGCGTCTTTCGATTTCTTAATGGCATAATAA
ACCTACACTTGTGAGTGTTGGCAGTTTTTCTTATTCTTTCTGACCTTCTT
TAATGTTAGATAACTATGTTCATCGATTATTACAAAGCAAGGGTGATGGC
AAACTTGTGGCTGTAAACAGTGAAGGAACTGAGGTATGCTTTATTTCAAG
TTCATGTTGAAATAATTATTGATCGCTTTATACTTTAGAAAAGTATACTT
CGTTAGTTAAATCTTTAGACGGGTATTTGACCTTCGATATTAGTCAAATT
TATCaggggttttgctttgtttttggtaggctggcgaatgaaaaattaac
tctggcGATTTCTAGACTCTAGGCCGGCGAATTCTAGATTCTAGGCCAGC
GAATTCTTAGCAAGGgcagtgtattgattagcgtaaaTATGCACTTGGTG
GCGAATCGAACCTTTCGAACCGCGAATTGTTATTTCTTTTCGTGCCTTAG
ACCGGCGAAATTCGCCGTTCGCCGGGCCTAAAAAAGACCCCTAATTATTA
AGAAGCACCTGACCTATTCACCCATAAAACGCAAGGAGACAGGGTTAGAC
TTCAGCAGGTAAAGTTGACAACAAATGGCTTGTTTTCGTTGCATTGTTTT
TCTCATGGACAATTTTGTCGTCATTTTCTTCATGGCAAACTCGAAGTCTT
TGTGGTGTTTAGGTTAACACTCTTTTTgtaatttatatatatattatata
ttatatttatagtatttattatcataaaattgacttttctttattttaga
tTGACAATGAAAAGGTGGATTCGTTGACTTTGGAGGTAAATTCACATGCT
TGCTCTCACTGAAAGCTATGCACTAGATCGTTTTTTTTTACACTGcctct
attttatttttgagcaacttttttaaagaaattattacatTAACGGCAAA
ACCAACCAGTCATTGTGAACCATGATAGCATACAAAATGTTTCGTCCAGA
AAGATGGAAATGCATAAACAGTGCCATACACCATATTCAACCCTAACACT
ACTAGGAGATTTTGACCTATTTTACCAGAGCTACTAGTATCTGTATCTTG
TATGCAAGTATCTGCATGTCATTAAAAGGACTACAGATATTGCCATTCAG
CCCTTGTAAACTCGAAACCAATCCCTTTTCTGCAGCGTTTAGTGTAAGGA
ATGGTTGATTTgtcattttattcttataaacgAAATAAACAATTCAAATT
AAGTCTACACAAATCTAAAACATCAACGTGTTTAGTGTCAAGAAAAGAAT
AACAAACAACCTGTctttgtctttctttttttagtaCACCTACCTTTTGA
CCAACCAACTGGAATCGCAACGTCAATTCTTTGAGCAGAAAATTGGTTTC
CTTGAAAAAGAGGCTTTTGAAAGGGTAAAGAAGTTTATCGCAAATAATAC
TTCACACAAACTTTCACAAAGTCTAACTTTCTTTTCCGTGCGTGTATCTT
CAAAAGTAGCCGAAAAAGTTAGGTTCTTTGAACTAAAAAGCTTTCTTCTG
TCACGTGTTTTTCGCATAAATGCTTATGCACCGGGTGaatcgataatatt
gaaattgACCTATTATGATGAAGAATTCtgaaggattttcaaaaatataa
ttatcCTTTTTATTTTGGGAAGTAAAAACAATAATCTTACATTTTCTTAA
CGTTTCTCGCTCTAGATAACTAGACTAGAAGAAAACGTTCACACCTCAAG
GATACGCAACGAGAAGACTGAAACAAAGCTGCAATCTGTCGAAAAGGAGA
AGAAGAATTTAGAGAAGAAATACGAAAATGTTGTAGGAAAAGCCACCAAA
CTTGGTAAAGAACTAAAAGATGAAAAACAAATGAATGAGTTCTTGAGAGT
AAATCAGGTAACAAATTAGTTTAACAGTACGGCAGTACGATGCCCTATAT
TTAAGGACCCTATATTTTAGGGACTTTTTTTTTCGAGAGAAAAGAAGTAA
TATATACTCATTCAAAAGATAATTTAATGCATTGATGTAAGCTTTGAAGA
ATACTCtttaaaatgaagatgaaaaagtgaaGATTTTTAGAATTAAGTTA
AATTAatacttttctaaaaatatttttgattaaaagttACAACCCTCCAC
AAAGGGCGACAAAAGGAATGAATCGAAATGGACCTTTTTTAAAGGGGAAa
atctaccgggtgcaccaaaaataAAGTACAGGTTTGTCGAGGTATTTaca
cgataaaaaaagaatgaacaaaaaatttaaatcctgaagctcacattATC
TcaacaaacctgtatactttttttggtgcaTTTAGTAGAGTGAACTAATT
TCAGATCTTCACTCTTTTTCTTACTCGCGCAGGGTGATTGGTATAAGAAA
GTGTCAGATCTGGAGAAGAGGCTGGTGAACTTGGAAGAGGAGAAAAATAG
ACAACTTATTGAACTACAAAGTGAGATCACTGATCTCATGAAACACCTGG
ATTTCCAGTCTGCTATCAACAGTTCCGCTGGATCAGTCAAGGAGGTAACA
TTATATGTAACTTTTACTATCATTGAATAAATATAATGATAAGCTATTTG
GTTTTGATTATTTGCATTCTGGTAAACTCGGACAGTCAAAATCCTGTATA
CTCCATTaaatgataaaaatgagaaagctTCATTGGCTGTTCCAAAATGT
TTGCATAaaagggggtggacgaactttttcaagtcaaaacaaatttcttg
gaaatgtaTGGATACCcgtgaaaaatggcaaaatttgcaaaaaagaccct
ggaaaaaattattttcgtgttttagagtgagggtggacgaattAATATCC
GTCGTTTACCCCTGGAAGTTTAAGAATAGTTGGAAAAATGAGCCTACTCC
CTGTATggttataaaatggaatggcccaatgatCCTCATAACTCAAGGTC
GGTGAAAAGCTAACAGTTTTTAATGGAgcattttcttcataaaattcaCA
GTGtttaattatcatttttctgATTCAATTACTTAATTTTAAATTCAACA
GGAGATCCAAGGCGGTCATCTATTCACAGAACAAGGCACACCATCTCCTT
CCAAAGGAGGAGCTAGATCGAAAACCAAAGGTCGCAAAAGGTGATATTGA
ACGCTTTGGTAACTTAAATTTTGCACTTTAAAGTAATTGAAGTTATGGCT
CAACTTGTTACCAAAAGTATTTAAGCTGCTCTGTCATTGGTCAATAATGA
GTTGACAAGGCATGTCCAGTTACATTGTGATGGTAAACTCTGGTGATCAA
AGTGTATTTGTAAATGATATTCCAAAGACGCACGCGATACTTGCACACTT
AAATAATGAAGCTATGACATTTTACTGAAAAAGGTTACCCTTTAACAGAG
CTAAGCAATAATACataaacttaaaaagttttcaatgaAATGTGTTAATA
TATCCTGATGAATGAAATTGAAAGCAATAATacataaactcaaaaagttt
tcaatgaAATGAAACGATACAGTATGCCAATTATGTCCTGGTGAATGAAA
TTGAAAGCAATAATacataaactcaaaaagttttcaatgaAATGAAACGA
TACAGTATGCCAATATGTCCTTGTGAATGAAATTGAAAGCAATAATacat
aaactcaaaaagtatccaataaaatgaaatgataCAGTATGCCAATATGT
CCTGGTGAGTGAAATTGAAAGCAATAATACATAAACTTGAGGAGCGCTCA
ATGAAATGAAATCATACAGTATGCCAATTATGTCCTGctgaataaaattg
aaattgaaatacgTTTACGTTACCTGTTATGTGATGTACTGTAAATCGAT
TTATAACAAGAAAATATTGGACAAGACTATCCATTTATTGAGTTACTTCA
AAACCACGGTACTTCTGGGCACCTTTTCCAAGGTAATTAATTTTCCTGAT
GAGTGAGAATATACCGgttgcgccacaaaaaagtttctctctttgaaatt
gattttctcgaaatctaaaaatgttaaaagaaccatgcctattccattgg
aaagaagaaagataaacttaaattttgataggtcatttattgaattcggt
tcattaaatcaaaagttatgctcaattgaataaaaaagttattttcagaa
agtgcccgaaaacgttaaaaatcaacctatcaaatttttattttaaaact
ggcAATCACAATAGGCTTAACATGATTaggagcatttttcagtaact

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041088	XLOC_041088	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_440	supercontig	scaffold_440:359141..365887 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.251045	0	0.257161	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

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BLAST of TCONS_00065564 vs. Swiss-Prot (Human)
Match: BRAP (BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 3.462e-93
Identity = 152/305 (49.84%), Postives = 209/305 (68.52%), Query Frame = 3

Query:    6 LTELPNCPVCLERMDESVAGILTVLCNHSFHNECLSKWQDDCCPVCRYRQTPEEEVDQTCFECDAKESLWICLICGYVGCGRYQEQHAFQHYKQTAHTFSMHLGNQRVWDYAGDNYVHRLLQSKGDGKLVAVNSEGTEIDNEKVDSLTLEYTYLLTNQLESQRQFFEQKIGFLEKEAFERITRLEENVHTSRIRNEKTETKLQSVXXXXXXXXXXXXXVVGKATKLGKELKDEKQMNEFLRVNQGDWYKKVSDLEKRLVNLEEEKNRQLIELQSEITDLMKHLDFQSAINSSAGSVKEEIQGGHL 920
            LTELP C VCLERMDESV GILT LCNHSFH++CL +W D  CPVCRY QTPE   +  CFEC  +E+LWICLICG++GCGRY  +HA++H+++T HT++M L N RVWDYAGDNYVHRL+ SK DGK+V    EG     EK+D+L LEY+YLLT+QLESQR ++E KI  +EK+  E I  ++     +  + +  E KL  + KEK+++E+K   +  K  KL  ELK+E++MN+ LR NQ     K+ + E+ L    ++K+ Q+ E+Q ++ D+M +L+ Q  IN      ++EIQ G +
Sbjct:  258 LTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKVAKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYLETQQKINHLPAETRQEIQEGQI 562

The following BLAST results are available for this feature:

BLAST of TCONS_00065564 vs. Swiss-Prot (Human)

BLAST of TCONS_00065564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BRAP	3.462e-93	49.84	BRCA1-associated protein OS=Homo sapiens GN=BRAP P...	[more]

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TCONS_00065564 (transcript) - C. hemisphaerica