TCONS_00065559 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00065559
Unique Name	TCONS_00065559
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1927

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_440:344755..350687+

transcript sequence

>TCONS_00065559 ID=TCONS_00065559|Name=TCONS_00065559|organism=Clytia hemisphaerica|type=transcript|length=1927bp
gtagATGTTATAAAAAAGTACATGAAGTTTTAAGAAATGGTTACTGAGAA
AAATGATTTATTTGAAACCTATGGTGCTAGTCAAAGGTACTATTATGACT
TGAAAGATGAAGAAACCAATCATATTCAACATTATAATCAAAAGGAAAAA
CACAAGGGATTTGCGAACAAAATAAAGGAGACTTTCAAGAGTGGATTTCT
ACCTCAAGGCTACCCAACAAGTGTTAGTGAGGATTATTTAGAATACCAAT
TATGGGACACAGTACAGgctttttgttcctccattacTGGAATGTTGGCA
ACACAAGCTATCCTCAAAGGTTATGGTGTAGGAAATGAGAAAGCAACTGT
GATGGCTGCCTCAATTACCTGGATGCTGAAAGATGGAGCTGGTATGATAG
GCAGAATCATGTTCGCTTGGTTGAAAGGAACTCAACTAGATTGTGATGCT
AAACGGTGGAGGTTATGTGCTGATGTTCTGAATGATACAGCTATATTCCT
TGATCTTCTGGCACCCATCTTCAAGATCAATCGTAGGTGTGGCTGGAGGG
GCGACAAGAGCAGCTTTAACACTTCATCAAGCGAGAAGAAATAATATGGC
TGATGTCTCTGCCAAGGATGGTAGTCAGGAAACACTGGTCAACTTGATGG
CTTTGATAGCAAGTTTCATCCTAACACCAATTGTCGCCGATCGTCCAATA
TTAGTCTGGTTCTTATTTATTCTCTTCACTTTCTTTCACCTGTTTGCTAA
TTATCGTGCTGTCAGTTGTGTTGTCATGGAAACGCTGAATATGAATAGAC
TGTACATTGTCATGCAGCATTTCATTGAGCATGAAGCTTTCTTATCGCCA
AAACAGGTCAACAAACTAGACCCAGTGCTAAGAAGGCACTGTAATTTCAA
AGACATTTGTATTGGTTCGAAGTTGGGAAGTATAATTAGGACGTATAAAA
TCCACAATAGTGATTTagaagaaattttgaagaatgaaAGAAATCAATAC
ATTGTTTCATTTGACCAAGGGAAAGTCTATGTTGCATTGCGCCATGGAGT
TGACGATAGTATTATCTTGCAAAGTAGCATAATGGCAATCCTGTTGGATA
TTGCTTTACGTAGTAGTGATATTAATTCCCAATATCTAAATAGTATCAGG
AGCTGTATAGATAAAGGAAACCCACACTCAACATTTCAAAGATTAAAACC
CTACGTTGAAGATTTGAATGTCAAACTTGTGAAAGGTTTATCCGCAAACG
GTTGGGATTTAACAAAATACCATTTAAATGCTGACGAATGGCGATATCAA
TGGCCTGATAAAGCTCTTTAGTCTTGTTTATGGTAGATTATTATTTAAAG
TCTTTTAAAAACGGTGAATGTAAAAgaatatttattattttctgttttct
gtttttcttagtattttaaTTAATGATTAATTTTGAGGTTTTCCTTCGAA
AAGTAATTGGGTTTTGAAGTCGGAAgatattttttagcattttggcaaat
attttatactttttttagtATTCTCGCCAccaatatataaaattttagca
tacagtatatggcccccaaaacggaggttttcattaaaatgaagattctg
acttgtagatttatcagaattaaacgatttttgtttattttgaaagaatg
atgaaattgattttgaaaaaataggcatgtttttgctggtttgagacgga
ttcacaataacatatttgcgtctaaaggaaatactttaacaccaaaatta
gataaaaattgcatataactcactctagctccttggatattgaaaataag
ttatgaaaacggggtatagggaactttctacacctaatgccgttcagaga
atgcaaatacatctgtgactttagaggctagGTAAAAGATATACCGGGTG
ctccacaaaaaagtttctctctttaaa

Run BLAST on NCBI

transcript from alignment at scaffold_440:344755..350687+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00065559 ID=TCONS_00065559|Name=TCONS_00065559|organism=Clytia hemisphaerica|type=transcript|length=5933bp|location=Sequence derived from alignment at scaffold_440:344755..350687+ (Clytia hemisphaerica)
gtagATGTTATAAAAAAGTACATGAAGTTTTAAGAAATGGTTACTGAGAA
AAATGATTTATTTGAAACCTATGGTGCTAGTCAAAGGTACTATTATGACT
TGAAAGATGAAGAAACCAATCATATTCAACATTATAATCAAAAGGAAAAA
CACAAGGGATTTGCGAACAAAATAAAGGAGACTTTCAAGGTGATTATTAT
ATGTGAAATTATTATAAAGATTCATAAGTTTGAAAAGTTACGATTCTGAT
TCTAAGAGCTCTGATTCTTGAGCTGACTTCTCATATTATCTCAAGCCAAA
ATCTCTATTAGACATTTGTTTATTAGCCCTTTTGGAAACATTATTttaag
cttcaaaattttttgtcacGTGTTCGTAttgattcattttatttttctac
tTATCTATAGAGTGGATTTCTACCTCAAGGCTACCCAACAAGTGTTAGTG
AGGATTATTTAGAATACCAATTATGGGACACAGTACAGGTTTGATATTCT
TGTTATCATATAGTGATAAACACTTTAcagtttgtttatttattttcatt
cttttgaTAAGCGATAGTAAACATTTCAAACTACTTTTACGAGTTGTAAG
TGATCGTTTGTTTCAAATgcaatgaaatgaaatgaaatgaaaaaccaaaa
aatcatTGTGTATCATTTGATGTGTATATCACTCGAAGAAATGAACTTAT
CTGTTGTATCAATGTTTTATTTAATCATTGACACATCCTTCCACGAGATA
CACCCAAGCATGAAAgctattttatctttttttaggctttttgttcctcc
attacTGGAATGTTGGCAACACAAGCTATCCTCAAAGGTTATGGTGTAGG
AAATGAGAAAGCAACTGTGATGGCTGCCTCAATTACCTGGATGCTGAAAG
ATGGAGCTGGTATGATAGGCAGAATCATGTTCGCTTGGTTGAAAGGGTAA
AACAATAAGAAATCAGAATAACTGAGCCATTCTAGATTAAAAACGCTATA
TAATACTACTTTAGTAAAATACTTTCTTGCAATTAACAAGTCGCTCTTAA
TTTATTAGATGTTAGTTTGATTATTAAATCTTGAAGTCATAAAGAAGgat
caatgataatttttttgtattcaTAAAATTCTTTTTAACCTATTGTATGT
ACAAGTAAAAAGAGTTATAAGGGGTCGGTTccattttctttctattttag
AACTCAACTAGATTGTGATGCTAAACGGTGGAGGTATGATTTTGAACAAT
CTAAAAACTTAACGACGATAAAAAGATCTTGCCCTTGCCTCCTTGTCAAT
TTGTGAGctagatttccaaaaaaagagAACCCTGGGTTTgctaaatgttt
attttttggaTAGCTTTTTGAAATACTATTTTAGTACACttgactagccg
tcacccggcgtcgcactcgccgaggagtagataagctgaatgcatcataa
gccctttggatTGTTGAGAGGTTATGTACTGTTTTATTGTTTTAGGTTAT
GTGCTGATGTTCTGAATGATACAGCTATATTCCTTGATCTTCTGGCACCC
ATCTTCAAGAGTTACTTCATTTTTATTGCATGCTTATCAAGTATCACTAG
GGTAAAAATTCAACAGCTTCATGCTGAACATGAATGATAAAGATAAATTA
GCAAACCCATTTGATTTATTCAAAGAGTTTCTTTTGGCTTTCTGTAAAAA
TGAGAAACCAATAGAAACCAACTCTTTTATTATCATTATGCTATAGTTAC
TTCTACTACTCTAAGTGTGATCTCTTTACAACCACCATTTGGAAAGCATC
AGAATAATTAGATTAATCCCCTTGAGAGTTGTTTCCACATGTATTGAAAA
AGAGTCCACACTTAAGTAATGTTTACTACAAAATTTCTTAGCCCAAGCTA
ATGGTTTTGATCAGCCAAGCTAGCCAACCTTGATGTTGGTAAACATTATC
TCACTTTAATAAAATAATCTCTTTTCACAGTCAATCGTAGGTGTGGCTGG
AGGGGCGACAAGAGCAGCTTTAACACTTCATCAAGCGAGAAGAAATAATA
TGGCTGATGTCTCTGCCAAGGATGGTAGTCAGGTATTTTATGAGAATGGA
ATCcctgattttttctgaaatttctcaGGAGATGAAACAGGCTCTTTCTT
TTGTTACTGGAGCTATTATTACAATGAACAATGATATTAACGAGGTTAAg
aagcaagtgtttatttagaccgtTTAATGCGATATCGTAGGCTTttgtac
ataagatttcacttgcatggtttgctttggtaatttatgtacaggcctac
cgTATCACACTTTACGGTGAAAATAAACcgttgcttaacctcgctattgc
CGGCTAGGTGGCTGTTCAGTTGGTACAGTATTACCTCTCAATCAAAGGGT
AGTTCTAGCTCAGCAATTTATCTTTCATGTCTAGTGCAGCAAGCAAATAG
TAAAGAATTTTATAATGCTTTCAGGAAACACTGGTCAACTTGATGGCTTT
GATAGCAAGTTTCATCCTAACACCAATTGTCGCCGATCGTCCAATGTAAA
GTAtctcattttttttcaactttcattttATCTGGGGTTGTTTTTGAATG
TAAAATTGAGATTATGGCCACAGAGAGGTGTATTATAAGTTGTTTTATac
aaaaaagagttttttgaaCTTCCAATTAAGTTTTGTACAAATAATTCTAT
CATtacataaaaaaacattttccagaTAGAATTTCTAAGTTTGTATTGTT
GATAGTTTTGCATTGACCAACTTCTTGTTGTTAGAATACTCCACTTGGGA
ATTGATCATAATCTAATGATTATTTTTGCTTTTCATTTATAGATTAGTCT
GGTTCTTATTTATTCTCTTCACTTTCTTTCACCTGTTTGCTAATTATCGT
GCTGTCAGTTGTGTTGTCATGGAAACGCTGAATATGAATAGACTGTACAT
TGTCATGCAGCATTTCATTGAGCATGAAGCTTTCTTATCGCCAAAACAGG
TCAACAAACTAGACCCAGTGCTAAGAAGTATNCTGTACATTGTCATGCAG
CATTTCATTGAGCATGAAGCTTTCTTATCGCCAAAACAGGTCAACAAACT
AGAACCAGTGCTAAGAAGTATGCTCTTTTTCACTTGCTTGCTTGGTGTTC
TGTAATCTCATAAAACGGTTTCAAAATGACCAATGACCAAACTTACTTTT
GCTACAACTTTTATTTACCACAACGGGTTTtctgttttaaaaatttcttt
gtttagttttcttgaaataaattGACCACATTACCCAGTAGTGTATTTCC
TATAGAGTAAAGGAATAATGGACTTTTTCAGGCCTGATTGAATATGATTT
GCTATCACGCATTGTACTCCGCTTATACTATACCTTTTGAGCCTGTATAC
TTATCAAAAAAGCCTTTTGCTTTGGGATATCTCTTTAATGATCTTACCGA
ATGACCCGTTAATTCAAGCCCTAAACAGCTTGGGCCAATGAAATTTAGGA
ATTAGATATGCATAGTCTTAATTCAAAATTTaggtattactttttaaatt
tgactccttaatctttaaaaaatgtgaaaaactaattttcttacATTCCT
TTTGTTTCTCAGGGCACTGTAATTTCAAAGACATTTGTATTGGTTCGAAG
TTGGGAAGTATAATTAGGACGTTAGTAAAGTAGTTTTGTTTATAACAGAG
CTGTAAGCTGTTGAGCTGTAAGCCTTAGGTCTATCTTAATTCAGGAGCTA
CTGTGTAGTATTACAAGCATCAAGGTTGTAACAAGAATCCCTTTTTTACT
TTCTCTAATCAACAAAGTCAAGTATGATTTTCTATAGAATAATCCATTGA
TCCACTTTTTCGTTCTACCCGCATAGTATTGATTATTTTTATGCTATCCT
TCTTTACAATATTCCTCCAATCCTACAATTCAGGTATAAAATCCACAATA
GTGATTTagaagaaattttgaagaatgaaAGAAATCAATACATTGTTTCA
TTTGACCAAGGTAAGCTTAACACATTGCCAAAATACTATAATTTGCATGT
GTACTTCAAATATGAAAACAAAGTAGCCTAATAATATCATAAGCATCTTA
TAGGCACATATTCTATTTTAATTAACACACTCACTGCATAGGTGATATGA
CTTACTCTCCCTACATTTAAGTTTCTAAAGTTTATTAGATCCTGGACCAC
TGTACCTTTCTATTGCCTTTCGGTGTTGAAGAGAAATTATCTCTTTTTCT
TGCAAATACCCTATTTGTAACTTTGGCACACTTTTAGATTATGTTCCCTT
CAGGGAATTCGAATATAATTCTTTTGTATCTTAGGGAAAGTCTATGTTGC
ATTGCGCCATGGAGTTGACGATAGTATTATCTTGCAAAGTAGCATAATGG
CAATCCTGTTGGATATTGCTTTACGTAGTAGTGATATTGTAAGAAATCAT
ACTTCTCAAATTGTAATTCATACTGTATTTCGTACGTTTATCTGACAGGT
GACGGCTCATAGCATATACAAAGTACCAATAAAAGCTTGGCATTTAAGCT
TTCAAGAGATTGGTTTTCGAGCATCTGTCACACTCCTAATGATCATTCTA
AGGAAAAAAGAccgcttattaattttgaaaaaatttcaatcgTCACAAGC
TGAactgctctaaatagcctggtttTAGCTTATAATTACTTTTTTTTCGG
TAATTGCAGCTGTAATAGTTAAACCATTTTCTTTTAGAATTCCCAATATC
TAAATAGTATCAGGAGCTGTATAGGTAaggattttcatttttgcaAGTTC
GGCCTCTAAGAGTTCCTAAGGAGCTTGTGCTCGAGTTTTTCAGGGCTGAA
TGATAACTAGCAATATGTTTAGCAATATGTTACAGTcattttaatgatat
ttttttcaatcattgaTCCCCTTTCTTACAGCTTTTGACGCAAGAGCTAA
TTAGGTGTATTAAAGGACCaggaaatgagaaaattttatatttcttCATG
ATCAAAACCCTGATATGGTGATTACCCGTGATGCACTCTTCTGTTAGTAG
AGCACGGAGGTGCGTCGCTTTTTTCGCACTTACTTTTACCCCAAAATACT
ATCTTTAAAATCAAGGAATTGCGTATTATGAAATGGTATTGTTGATATGC
TGATTTTCAATTGCAGATAAAGGAAACCCACACTCAACATTTCAAAGATT
AAAACCCTACGTTGAAGATTTGAATGTCAAACTTGTGAAAGGTTTATCCG
CAAACGGTTGGGATTTAACAAAATACCATTTAAATGCTGACGAATGGCGA
TATCAATGGCCTGATAAAGCTCTTTAGTCTTGTTTATGGTAGATTATTAT
TTAAAGTCTTTTAAAAACGGTGAATGTAAAAgaatatttattattttctg
ttttctgtttttcttagtattttaaTTAATGATTAATTTTGAGGTTTTCC
TTCGAAAAGTAATTGGGTTTTGAAGTCGGAAgatattttttagcattttg
gcaaatattttatactttttttagtATTCTCGCCAccaatatataaaatt
ttagcatacagtatatggcccccaaaacggaggttttcattaaaatgaag
attctgacttgtagatttatcagaattaaacgatttttgtttattttgaa
agaatgatgaaattgattttgaaaaaataggcatgtttttgctggtttga
gacggattcacaataacatatttgcgtctaaaggaaatactttaacacca
aaattagataaaaattgcatataactcactctagctccttggatattgaa
aataagttatgaaaacggggtatagggaactttctacacctaatgccgtt
cagagaatgcaaatacatctgtgactttagaggctagGTAAAAGATATAC
CGGGTGctccacaaaaaagtttctctctttaaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041087	XLOC_041087	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_440	supercontig	scaffold_440:344755..350687 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.7244	49.2064	28.8091	23.2348	3.81912	4.35115	5.67719	2.1256	11.1413	8.40563	7.53195	8.26333	7.20377	6.02593	9.52493	10.9181	11.3063	12.8233	8.07129	7.70488	9.50464	9.3836	22.2857	22.0792	5.57986	4.40819	9.69637	9.9507	13.3585	19.0927

Blast

[Close]

BLAST of TCONS_00065559 vs. Swiss-Prot (Human)
Match: RUS1 (RUS1 family protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.652e-80
Identity = 74/111 (66.67%), Postives = 95/111 (85.59%), Query Frame = 1

Query:  196 FLPQGYPTSVSEDYLEYQLWDTVQAFCSSITGMLATQAILKGYGVGNEKATVMAASITWMLKDGAGMIGRIMFAWLKGTQLDCDAKRWRLCADVLNDTAIFLDLLAPIFKI 528
            FLPQG+P SVS DYL YQLWD+VQAF SS++G LATQA+L G GVGN KATV AA+ TW++KD  GM+GRI+FAW KG++LDC+AK+WRL AD+LND A+FL+++AP++ I
Sbjct:   77 FLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPI 187

HSP 2 Score: 149.828 bits (377), Expect = 2.652e-80
Identity = 99/272 (36.40%), Postives = 153/272 (56.25%), Query Frame = 2

Query:  521 SRSIVGVAGGATRAALTLHQARRNNMADVSAKDGSQETLVNLMALIASFILTPIVADRPIXXXXXXXXXXXXXXXANYRAVSCVVMETLNMNRLYIVMQHFIEHEAFLSPKQVNKLDPVLRRHCNFKDICIGSKLGSIIRTYKIHNSDLEEILKNERNQYIVSFDQG--KVYVALRHGVDDSIILQSSIMAILLDIALRSSDINSQYLNSIRSCIDKGNPHSTFQRLKPYVEDLNV---KLVKGLSANGWDLTKYHLNADEWRYQW---PDK 1312
            ++ IV VAGGATRAALT+HQARRNNMADVSAKD SQETLVNL  L+ S ++ P+V+  P      F   T  H++ANYRAV  +VMETLN  RL +V++H+++    L P   N+++P+         + +G  L  ++ +      +L+++++  +  Y++ +DQ   +V V L        IL+++   ++L  AL+        L  +R+ +  G    ++  +K   E L++   K +KGL   GW   K+ L  DEWR  W   P+K
Sbjct:  199 AKCIVSVAGGATRAALTVHQARRNNMADVSAKDSSQETLVNLAGLLVSLLMLPLVSGCPGFSLGCFFFLTALHIYANYRAVRALVMETLNEGRLRLVLKHYLQRGEVLDPTAANRMEPLWTGFWPAPSLSLGVPLHRLVSSV----FELQQLVEGHQESYLLCWDQSQNQVQVVLNQKAGPKTILRAATHGLMLG-ALQGDGPLPAELEELRNRVRAGPKKESWVVVKETHEVLDMLFPKFLKGLQDAGWKTEKHQLEVDEWRATWLLSPEK 465

The following BLAST results are available for this feature:

BLAST of TCONS_00065559 vs. Swiss-Prot (Human)

BLAST of TCONS_00065559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RUS1	2.652e-80	66.67	RUS1 family protein C16orf58 OS=Homo sapiens GN=C1...	[more]

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TCONS_00065559 (transcript) - C. hemisphaerica