|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065558 ID=TCONS_00065558|Name=TCONS_00065558|organism=Clytia hemisphaerica|type=transcript|length=2102bpRun BLAST on NCBI protein sequence of TCONS_00065558-protein >TCONS_00065558-protein ID=TCONS_00065558-protein|Name=TCONS_00065558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp MVTEKNDLFETYGASQRYYYDLKDEETNHIQHYNQKEKHKGFANKIKETFRun BLAST on NCBI transcript from alignment at scaffold_440:344621..350687+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065558 ID=TCONS_00065558|Name=TCONS_00065558|organism=Clytia hemisphaerica|type=transcript|length=6067bp|location=Sequence derived from alignment at scaffold_440:344621..350687+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_440:344621..350687+ >TCONS_00065558 ID=TCONS_00065558|Name=TCONS_00065558|organism=Clytia hemisphaerica|type=CDS|length=17238bp|location=Sequence derived from alignment at scaffold_440:344621..350687+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00065558 vs. Swiss-Prot (Human)
Match: RUS1 (RUS1 family protein C16orf58 OS=Homo sapiens GN=C16orf58 PE=1 SV=2) HSP 1 Score: 315.849 bits (808), Expect = 6.920e-99 Identity = 174/394 (44.16%), Postives = 250/394 (63.45%), Query Frame = 3
Query: 330 FLPQGYPTSVSEDYLEYQLWDTVQAFCSSITGMLATQAILKGYGVGNEKATVMAASITWMLKDGAGMIGRIMFAWLKGTQLDCDAKRWRLCADVLNDTAIFLDLLAPIFKSYFIFIACLSSITRSIVGVAGGATRAALTLHQARRNNMADVSAKDGSQETLVNLMALIASFILTPIVADRPIXXXXXXXXXXXXXXXANYRAVSCVVMETLNMNRLYIVMQHFIEHEAFLSPKQVNKLDPVLRRHCNFKDICIGSKLGSIIRTYKIHNSDLEEILKNERNQYIVSFDQG--KVYVALRHGVDDSIILQSSIMAILLDIALRSSDINSQYLNSIRSCIDKGNPHSTFQRLKPYVEDLNV---KLVKGLSANGWDLTKYHLNADEWRYQW---PDK 1487
FLPQG+P SVS DYL YQLWD+VQAF SS++G LATQA+L G GVGN KATV AA+ TW++KD GM+GRI+FAW KG++LDC+AK+WRL AD+LND A+FL+++AP++ F S++ + IV VAGGATRAALT+HQARRNNMADVSAKD SQETLVNL L+ S ++ P+V+ P F T H++ANYRAV +VMETLN RL +V++H+++ L P N+++P+ + +G L ++ + +L+++++ + Y++ +DQ +V V L IL+++ ++L AL+ L +R+ + G ++ +K E L++ K +KGL GW K+ L DEWR W P+K
Sbjct: 77 FLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARRNNMADVSAKDSSQETLVNLAGLLVSLLMLPLVSGCPGFSLGCFFFLTALHIYANYRAVRALVMETLNEGRLRLVLKHYLQRGEVLDPTAANRMEPLWTGFWPAPSLSLGVPLHRLVSSV----FELQQLVEGHQESYLLCWDQSQNQVQVVLNQKAGPKTILRAATHGLMLG-ALQGDGPLPAELEELRNRVRAGPKKESWVVVKETHEVLDMLFPKFLKGLQDAGWKTEKHQLEVDEWRATWLLSPEK 465 The following BLAST results are available for this feature:
BLAST of TCONS_00065558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.