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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065552 ID=TCONS_00065552|Name=TCONS_00065552|organism=Clytia hemisphaerica|type=transcript|length=632bp TATTGAACAACTTTGTAAAATCAGATATGTCTGAGGAGGAAAAATTTGCC ATTGATGTTCAATTGATGAATGTTGCAGAGCAAAATAAAggGGTTCTATT AGCTTGGTGTTGCAAACACGGTAAAAAGTTGGATGATGTTATCAAACAAC ACGTCGATGCAATGTCAAAAGAGGTTAAAAAAAGACTTGGAGGGGATCCA CAGTCACGTCTACTGACCTCCCTGTCAGCTAATATCCTGACATCATTTCA GTTGGTAATTACCACTGATCTTCACAGGATGTTCAAGCCATTCGACATTT TTGATCAATGCCTTGGGAAGCAGGAGCAAAATTTTATATCAGACCACTGT GCCAACACGTGGGAGGAAATAACACAAACAGTCCTAGCTGAAAAAGACAA AGAGCTTGCTACATGGTTCAACCCAGAAACGTCTTTTATCGAAGAGAGCA ATGGTATCAAGCGTGCAGTCCAATGTATTGGGATTAGAGTTCTCAAACTT AGACAGTTTGATTGCAATTTTGATATTATCAAATCCTACGTTCAAAAGTT TGGTAAGGGTGGGAAGAGGACTTACAATGTGAACGCTAAGTTTTGCGATT GTAAAACATCAACCTTGGacgatttaaaaaat Run BLAST on NCBI protein sequence of TCONS_00065552-protein >TCONS_00065552-protein ID=TCONS_00065552-protein|Name=TCONS_00065552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
LNNFVKSDMSEEEKFAIDVQLMNVAEQNKGVLLAWCCKHGKKLDDVIKQH VDAMSKEVKKRLGGDPQSRLLTSLSANILTSFQLVITTDLHRMFKPFDIF DQCLGKQEQNFISDHCANTWEEITQTVLAEKDKELATWFNPETSFIEESN GIKRAVQCIGIRVLKLRQFDCNFDIIKSYVQKFGKGGKRTYNVNAKFCDC KTSTLDDLKN Run BLAST on NCBI transcript from alignment at scaffold_440:137132..143884+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065552 ID=TCONS_00065552|Name=TCONS_00065552|organism=Clytia hemisphaerica|type=transcript|length=6753bp|location=Sequence derived from alignment at scaffold_440:137132..143884+ (Clytia hemisphaerica) TATTGAACAACTTTGTAAAATCAGATATGTCTGAGGAGGAAAAATTTGCC
ATTGATGTTCAATTGATGAATGTTGCAGAGCAAAATAAAGTAAGGCCTCA
TCAATTATTTGGAAAtattataatttaaaaaaaggtttaacTTTGATTGT
ATGATACAGTTTGCATGCACAACTTTTTTcacaataatatttttttaata
ctaGTGTGTGAGTTGGTAGTGGgtagaaataatttttgcgTGAGTGCATG
GGTCAAAAAAGCTGAACAAAACACATCTTAGATTCATTTTTATGTCAAGA
GGTTCAAAATCAAATACTTTGATTTAATTTAAATATAGTATCAAGACAGC
ATATATGCTTTATCGTACGCTAATCCTGCTGCCTGCTCTGGATAGTTTTC
GTATCATCAGTAcgtgtttttcaattttagggGGTTCTATTAGCTTGGTG
TTGCAAACACGGTAAAAAGTTGGATGATGTTATCAAACAACACGTCGATG
CAATGTCAAAAGAGGTTAAAAAAAGACTTGGAGGGGATCCACAGTCACGT
CTACTGACCTCCCTGTCAGCTAATATCCTGACATCATTTCAGGTGAGTTA
TAATCCAATCCTTTACACAACCTTTCAACAGTGTTTAAATAAATTTGTCA
ACAGTGTTTATAATGATTTTTATCAGATTGATAAGCTTATGCTTGTGAAA
CTTcattaaaaaagtgaaaaatgaaatacctctaagaaaagcaaaaatgt
gcattctattgaaaaaaggtttcttttgttcaaaattttctgaattaacc
ttttctttcttcaaaagaACACACTTTTCTAAAAACGACcaattttctaa
acttgcctcaccttaattaaataaaaaaagccTAAATTATTTGTGGTAAA
TAATATCCATTGCTGTGCAAGCACAATTTTGTGTTACTCTTTTATTTATT
CTGCAATTTTGAACAACCCTTAGATAATTCTAACTATCTTGAATTGGAGG
ATTTTTAAAGACttagataaaaatgaaatttcgaaATAGGAAGGTCATCT
TGAAGTCATAGAATAAATATGTCATCAGATATTAAAGGAAGTATCTGATG
TACTGTATTTGGTCAGATTTTGTTTTATTCCATTGAAAGTCTATGCTTTT
GGACTACGCAATTGCAAAGATGGCGGACGCAAAACCGTCAATCTGTAACT
TACGGTACTGATTTTCCAGAAATTTTAACTCTTTGCTTAGTGAACAGTGC
TTAAAAGCATAAGAAAGTTTACACCAAAGATGGAAGAATTGATGCGGaaa
ctttttcctgaaaattacAGTTCAACCGGTGCTATACAATCAGAATCTTT
GGTGGCGAATGTACCCGTTCCTGACCTAGCTACCGTGCCCGTGTACCGTG
ACTCTCAACCTCCGAAACCACCGAAAGAACTTCAATACGAATGTAAATGG
GGTTGCAAAAGGTCATTTTCAAAGCCATCAGGAAGGTCAAATCACGAAAG
AAAATGTCCGCTTAAAAGTCACACTAAAGAATTCGAAGATCCTGTATCGA
AAAAAACTGTCAACCTTAAAGTGACATCACTTAACCTAAATAAAGAATCG
TCGTCAGAACcgataaatccaaaatatttCCAGCCAAAAGTATGGGGCAA
TCACACAGTGAATGACATCGATCAGATCCTTTCTGCCGCGTCCAATGAAA
CCAGTCAATGGCGGAAGAATATCTTCAACGTCCCAAGTGGTGCAGTCGGT
AAAAACTTTGTTGAGGAAATCACTCGCTTGATAAATTTATGGAACAATCT
GTCACCTTTGTCGAATGTCGCCTTGAAAGCCCTGTCCGTGTTACCATCGC
TCCTTTTACAGAAACCATCAAAGACATCGAAATCGAGAGAACATACGAAA
CATCTACAGCGACGTCTGGATCTTTGGAGAGAAGGCGATTTTGACTCGTT
GATCCGCGAAAGCCGAATGctacaatcaaaattttcaaagtctgctGCTG
ATCGAGTTACATCAATATCGAAACGATTTAGTGATTTGATGTTTCAAGGC
AAAGTGTATGCAGCAATCAAACTCTTATCTAACTCAACGAATTCAAACGG
AATTGTACCAATCAACGATACCACGTTGCAAATTCTTCAGCAAAAGCATC
CTAGAGGTCGACCAAAGATTGACGAGCTGATTGTTCAGGGACCATTCAAC
AAAATCGACCCCACGCTTTTTGAAGCCATCGATGAAGAACTCATAAAAAG
TATGGCAGCTAAAACAAAAGGTTCTTCCGGCCCCTCCAAGATCGATGCAC
AAATGTGGCAACGTATCCTTTTGTCAAAAAACTTCGGTGATCGTTCTAGT
GATTTATGCAAGGCGATTGCAAGGATGACGAGAATCATGTGCACTGAACA
ATGCAACAAAGAATCCGGTAGGGACATGGAGGCGTTGTTATCGTGCACCC
TGATACCTTTGGATAAGAACCCCGGCATTCGACCGATCGGCATCGGGGAA
GTTCTTAGACGCATCGTTGGAAAGACTGTTACAACATTCCTGAGGAATGA
AATACAAGAAGCAGCTGGCAATCTCCAACTGTGCGCTGGTCAGCTGGGTG
GATGTGAGGCTGCAGTGCACGCGATGTCAGACATCTACAACGACGAGAAC
ACAGACGGTGTTCTACTGGTCGACGCTTCAAATGCATTTAACAGCATAAA
CCGTGAAGTTATGATGCACAACATTAACATCCTTTGTCCAACCTTGGCGA
TGTTTGCTACCAACTGCTATTCGAACCACGTCCATCTGTTTGCGATTGGA
GGAGCAGAGCTGTCGTCTTCTGAAGGTACAACACAAGGAGATCCGATCGC
TATGGCTCTCTACGGCATATGTTTGCTTCCCTTGANNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTAGCTGATAAAATCTCGG
CAAAACAAAAATGCTCGAAAAGTGAGGTTGTGAATGGCATACGACGCAAA
ATTTCCTTCGTTTTGATCCGATCAGTGGTTGCTTGCCTGAGAGGTGAACG
ATCTAGTCGTTCGTTTACCCCAGAACAAGCTANCAACAACTCCCATCAAT
CAACCAAAAAGCTTTGGAAATCGCTTCATCTCAAGGTGCTTCCTCGTGGC
TGACCACTCTTCCACTGAAAGAAGATAATTTTGTACTGAATAAACGTGAA
TTTGCTGACGCACTCCACATGAGGTATGGCTGGGAAATGAAGCGACCCCC
AGCTTATGGATTTGTCTCGTGAACAGGTCGATTTACCACGCTCATCTGTT
ACTGGGAATGAAGCTAGGGCGGATGTTAGTGCTAATGGATTTTGGCAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGCTAATGGATTTTGGCAGCGGTATCAAAGAGCATTTTTTG
ACGTGAAGGTTTGCAACCTTTTAGCTCCGAGCTATCGCATAAAATCTATT
GGCACTACATTCACTTCACTTGAAAAGCAAAAGAAGAGAGCATACAACGA
ACGGATTCTTCAAGTTGAGAGNTTCATTGTTctctttttttaatcaaaaa
tttataCAAAAGTATGTTTGTTAATATATTTGACTCATGTAGTATATCAT
TTTGATTAAAATAATTATTAATAATAtcatcttttgttttctaaagTCTA
TGCTTGCAATATACTGATGATTACAAGCAGTGTAAGTGTGAAGTGTAATC
CGAATGGCATATAAATTATATCATTTCAGTTGGTAATTACCACTGATCTT
CACAGGATGTTCAAGCCATTCGACATTTTTGATCAATGCCTTGGGAAGCA
GGAGCAAAATTTTATATCAGACCACTGTGCCAACACGTGGGAGGAAATAA
CACAAACAGTCCTAGCTGAAAAAGACAAAGAGGTAAAAAATTAATTCCTA
CAGGAGTCTGATTATTATATGACACAAACTTCCTTTCAGTGTGACAAGTG
GTTGCAGATAAAAAAAGGAAATGCTCAATTGTAATCAAATTTGTTGATAA
CTTCTACTTCTGGAATacgtttatttgaaaatattggaCAGAAAAGAATC
AAACGTAGCCATTAATGCGCTTCAGACAATAAAGCAATATATAGTTCTAA
AGTTGATAACCTTAAGGGCAGAAAtgttggcaggaatttaatttggcagg
tgatatatttttgacataaaaacACTACTGATTAAAACTGTTTTAAGGCC
TAAATAGCACACTCTTGCACTAAACAACATTGTTTGAAACCTGTTTTCTT
TTCAGCTTGCTACATGGTTCAACCCAGAAACGTCTTTTATCGAAGAGAGC
AATGGTATCAAGCGTGCAGTCCAATGTATTGGGATTAGAGTTCTCAAACT
TAGACAGTTTGATTGCAATTTTGATGTAAGTTAACACTTTTTATTCCACT
TATTAAAATCTTAGAGtggcaaattcaaaatatagtaaagaaaaattctt
ttgagctaaatttctttaaacaggccgtaactcacttgagatTACTTTGA
TCTGCCCTGACTTGTGTCAATCAACAAACCATTGTTTTTCAATAGATTAT
CAAATCCTACGTTCAAAAGTTTGGTAAGGGTGGGAAGAGGACTTACAATG
TGAACGCTAAGTTTTGCGATTGTAAAACATCAACCTTGGacgatttaaaa
aat Coding sequence (CDS) from alignment at scaffold_440:137132..143884+ >TCONS_00065552 ID=TCONS_00065552|Name=TCONS_00065552|organism=Clytia hemisphaerica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_440:137132..143884+ (Clytia hemisphaerica) TTGAACAACTTTGTAAAATCAGATATGTCTGAGGAGGAAAAATTTGCCAT TGATGTTCAATTGATGAATGTTGCAGAGCAAAATAAAggGGTTCTATTAG CTTGGTGTTGCAAACACGGTAAAAAGTTGGATGATGTTATCAAACAACAC GTCGATGCAATGTCAAAAGAGGTTAAAAAAAGACTTGGAGGGGATCCACA GTCACGTCTACTGACCTCCCTGTCAGCTAATATCCTGACATCATTTCAGT TGGTAATTACCACTGATCTTCACAGGATGTTCAAGCCATTCGACATTTTT GATCAATGCCTTGGGAAGCAGGAGCAAAATTTTATATCAGACCACTGTGC CAACACGTGGGAGGAAATAACACAAACAGTCCTAGCTGAAAAAGACAAAG AGCTTGCTACATGGTTCAACCCAGAAACGTCTTTTATCGAAGAGAGCAAT GGTATCAAGCGTGCAGTCCAATGTATTGGGATTAGAGTTCTCAAACTTAG ACAGTTTGATTGCAATTTTGATATTATCAAATCCTACGTTCAAAAGTTTG GTAAGGGTGGGAAGAGGACTTACAATGTGAACGCTAAGTTTTGCGATTGT AAAACATCAACCTTGGacgatttaaaaaatTTGAACAACTTTGTAAAATC AGATATGTCTGAGGAGGAAAAATTTGCCATTGATGTTCAATTGATGAATG TTGCAGAGCAAAATAAAggGGTTCTATTAGCTTGGTGTTGCAAACACGGT AAAAAGTTGGATGATGTTATCAAACAACACGTCGATGCAATGTCAAAAGA GGTTAAAAAAAGACTTGGAGGGGATCCACAGTCACGTCTACTGACCTCCC TGTCAGCTAATATCCTGACATCATTTCAGTTGGTAATTACCACTGATCTT CACAGGATGTTCAAGCCATTCGACATTTTTGATCAATGCCTTGGGAAGCA GGAGCAAAATTTTATATCAGACCACTGTGCCAACACGTGGGAGGAAATAA CACAAACAGTCCTAGCTGAAAAAGACAAAGAGCTTGCTACATGGTTCAAC CCAGAAACGTCTTTTATCGAAGAGAGCAATGGTATCAAGCGTGCAGTCCA ATGTATTGGGATTAGAGTTCTCAAACTTAGACAGTTTGATTGCAATTTTG ATATTATCAAATCCTACGTTCAAAAGTTTGGTAAGGGTGGGAAGAGGACT TACAATGTGAACGCTAAGTTTTGCGATTGTAAAACATCAACCTTGGacga tttaaaaaatTTGAACAACTTTGTAAAATCAGATATGTCTGAGGAGGAAA AATTTGCCATTGATGTTCAATTGATGAATGTTGCAGAGCAAAATAAAggG GTTCTATTAGCTTGGTGTTGCAAACACGGTAAAAAGTTGGATGATGTTAT CAAACAACACGTCGATGCAATGTCAAAAGAGGTTAAAAAAAGACTTGGAG GGGATCCACAGTCACGTCTACTGACCTCCCTGTCAGCTAATATCCTGACA TCATTTCAGTTGGTAATTACCACTGATCTTCACAGGATGTTCAAGCCATT CGACATTTTTGATCAATGCCTTGGGAAGCAGGAGCAAAATTTTATATCAG ACCACTGTGCCAACACGTGGGAGGAAATAACACAAACAGTCCTAGCTGAA AAAGACAAAGAGCTTGCTACATGGTTCAACCCAGAAACGTCTTTTATCGA AGAGAGCAATGGTATCAAGCGTGCAGTCCAATGTATTGGGATTAGAGTTC TCAAACTTAGACAGTTTGATTGCAATTTTGATATTATCAAATCCTACGTT CAAAAGTTTGGTAAGGGTGGGAAGAGGACTTACAATGTGAACGCTAAGTT TTGCGATTGTAAAACATCAACCTTGGacgatttaaaaaatTTGAACAACT TTGTAAAATCAGATATGTCTGAGGAGGAAAAATTTGCCATTGATGTTCAA TTGATGAATGTTGCAGAGCAAAATAAAggGGTTCTATTAGCTTGGTGTTG CAAACACGGTAAAAAGTTGGATGATGTTATCAAACAACACGTCGATGCAA TGTCAAAAGAGGTTAAAAAAAGACTTGGAGGGGATCCACAGTCACGTCTA CTGACCTCCCTGTCAGCTAATATCCTGACATCATTTCAGTTGGTAATTAC CACTGATCTTCACAGGATGTTCAAGCCATTCGACATTTTTGATCAATGCC TTGGGAAGCAGGAGCAAAATTTTATATCAGACCACTGTGCCAACACGTGG GAGGAAATAACACAAACAGTCCTAGCTGAAAAAGACAAAGAGCTTGCTAC ATGGTTCAACCCAGAAACGTCTTTTATCGAAGAGAGCAATGGTATCAAGC GTGCAGTCCAATGTATTGGGATTAGAGTTCTCAAACTTAGACAGTTTGAT TGCAATTTTGATATTATCAAATCCTACGTTCAAAAGTTTGGTAAGGGTGG GAAGAGGACTTACAATGTGAACGCTAAGTTTTGCGATTGTAAAACATCAA CCTTGGacgatttaaaaaatTTGAACAACTTTGTAAAATCAGATATGTCT GAGGAGGAAAAATTTGCCATTGATGTTCAATTGATGAATGTTGCAGAGCA AAATAAAggGGTTCTATTAGCTTGGTGTTGCAAACACGGTAAAAAGTTGG ATGATGTTATCAAACAACACGTCGATGCAATGTCAAAAGAGGTTAAAAAA AGACTTGGAGGGGATCCACAGTCACGTCTACTGACCTCCCTGTCAGCTAA TATCCTGACATCATTTCAGTTGGTAATTACCACTGATCTTCACAGGATGT TCAAGCCATTCGACATTTTTGATCAATGCCTTGGGAAGCAGGAGCAAAAT TTTATATCAGACCACTGTGCCAACACGTGGGAGGAAATAACACAAACAGT CCTAGCTGAAAAAGACAAAGAGCTTGCTACATGGTTCAACCCAGAAACGT CTTTTATCGAAGAGAGCAATGGTATCAAGCGTGCAGTCCAATGTATTGGG ATTAGAGTTCTCAAACTTAGACAGTTTGATTGCAATTTTGATATTATCAA ATCCTACGTTCAAAAGTTTGGTAAGGGTGGGAAGAGGACTTACAATGTGA ACGCTAAGTTTTGCGATTGTAAAACATCAACCTTGGacgatttaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00065552-exon-scaffold_440-1491911889:137132..137220 | TCONS_00065552-exon-scaffold_440-1491911889:137132..137220 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1510915933:137132..137220 | TCONS_00065552-exon-scaffold_440-1510915933:137132..137220 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1575043694:137132..137220 | TCONS_00065552-exon-scaffold_440-1575043694:137132..137220 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1491911889:137562..137723 | TCONS_00065552-exon-scaffold_440-1491911889:137562..137723 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1510915933:137562..137723 | TCONS_00065552-exon-scaffold_440-1510915933:137562..137723 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1575043694:137562..137723 | TCONS_00065552-exon-scaffold_440-1575043694:137562..137723 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1491911889:142961..143113 | TCONS_00065552-exon-scaffold_440-1491911889:142961..143113 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1510915933:142961..143113 | TCONS_00065552-exon-scaffold_440-1510915933:142961..143113 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1575043694:142961..143113 | TCONS_00065552-exon-scaffold_440-1575043694:142961..143113 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1491911889:143487..143606 | TCONS_00065552-exon-scaffold_440-1491911889:143487..143606 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1510915933:143487..143606 | TCONS_00065552-exon-scaffold_440-1510915933:143487..143606 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1575043694:143487..143606 | TCONS_00065552-exon-scaffold_440-1575043694:143487..143606 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1491911889:143777..143884 | TCONS_00065552-exon-scaffold_440-1491911889:143777..143884 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1510915933:143777..143884 | TCONS_00065552-exon-scaffold_440-1510915933:143777..143884 | Clytia hemisphaerica | exon |
TCONS_00065552-exon-scaffold_440-1575043694:143777..143884 | TCONS_00065552-exon-scaffold_440-1575043694:143777..143884 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_440 | supercontig | scaffold_440:137132..143884 + |
Blast
The following BLAST results are available for this feature:
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