TCONS_00065551 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065551
Unique NameTCONS_00065551
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065551 ID=TCONS_00065551|Name=TCONS_00065551|organism=Clytia hemisphaerica|type=transcript|length=521bp
GAAATCCTGTTGGAAGGTGTGTAACGAGATGAGTACGGAGATTGAAGATG
AAAACATTTACGAAAATGTTGTCCCAAATTCAGAATTTGTAATCGTCAAT
GGATGCACCTTTCGAAAGGTTAACAGGGAcatcaaatatattttatctTT
TACACTGAAGAAAGTGGGAATCCTTACCATACCTGGTAAACCCGTGGAAA
CTGTATACCACTTAAAAAGTCATGATCCCTTGAATGATGGAACAATGTTG
TGCAGACTTGCAAGATTAGTTTCACGAGACTTCGATTCGAGGAAAGCGTT
TTACGATTCAATAACAACATTCGGAAAAGGGATGAAAATCCACGTGGACA
CCATTGTAAATGCTCAGATATTGAGCGATTTCTATCGGCATTTGGAAACC
CACGGCGACGAGGAGTTAAAAATCTATAGAATGGCTGATATAATCGGAGT
CATAGAGGACACCTTAGTCCTTTCAAATGATATGCAAATAAGAGGTGGGA
GATTGGTACCTCAGATGGACG
Run BLAST on NCBI

protein sequence of TCONS_00065551-protein

>TCONS_00065551-protein ID=TCONS_00065551-protein|Name=TCONS_00065551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
KSCWKVCNEMSTEIEDENIYENVVPNSEFVIVNGCTFRKVNRDIKYILSF
TLKKVGILTIPGKPVETVYHLKSHDPLNDGTMLCRLARLVSRDFDSRKAF
YDSITTFGKGMKIHVDTIVNAQILSDFYRHLETHGDEELKIYRMADIIGV
IEDTLVLSNDMQIRGGRLVPQMD
Run BLAST on NCBI

transcript from alignment at scaffold_440:132147..134664+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065551 ID=TCONS_00065551|Name=TCONS_00065551|organism=Clytia hemisphaerica|type=transcript|length=2518bp|location=Sequence derived from alignment at scaffold_440:132147..134664+ (Clytia hemisphaerica)
GAAATCCTGTTGGAAGGTGTGTAACGAGATGAGTACGGAGATTGAAGATG
AAAACATTTACGAAAATGTAAGTCAAACCTTAGATATTATACAGAGAAAA
TAAGAGCATGCTAGACTAAAGGTATGTTGTAACTTACCTTAGACTGAGAG
GATTAACAATCTTGGTCTTTTTTAAACAATGTTAAACTTTTATAGCTAAC
CTAACCCAGACCAACTAGATTCAACCAGAGTCTCCAAACACGGGACCCGC
AGTATGAGCTTTTTGTGAGGGCGTACGGGGGTTTGCGATTTCAGAAATAc
tgaataattttgccaaaatttccaaaattccgtaaaaaatacttgcaaag
atacaaatttttttgagtatttttcttcgttttgagtaatttttcatcaa
atttgatttttcatgtatgaatttcgaaaaaaaagagataaaaactTCAT
CATActgaaatttcaaagcaaaaattcatggatttccgataccgaaacaa
tttcagaattccgaaataccacAGGAATTTTGCCCGAACTCCAtaatttc
aaataataaagggtCGATTTCTGCAATTCTGAAATACGGTACGTCCCCAG
GTCTCCCACCACCTTTTAAGGCCACTTGCTGATTTTGAACTTGTTTGAAG
TGTGTTCAGGCCAGGATTTCAGATGCAAAACATTCCAAAATTTTGTGACC
TAAACTTGTCTGAAACATCAATGTCCAGGCCAAGAGAAAAAGATTTCTGC
ATAATGCATGATGGTGGAGGAAAAGCAAAATGCTCTTGTGGAAAAATTGC
GTTTTTTAAAAGCTAGTTAGTAGTTTTCACTCTCATTTTACAGGTTGTCC
CAAATTCAGAATTTGTAATCGTCAATGGATGCACCTTTCGAAAGGTTAAC
AGGGAcatcaaatatattttatctTTTACACTGAAGAAAGTGGGAATCCT
TACCATACCTGGTAAACCCGTGGAAACTGTATACCACTTAAAAAGTCATG
ATCCCTTGAATGATGGAACAATGTTGTGCAGGTAatcgaatttttatttt
cccatTTGAttctccttgtttgttttgcaAATGTTTTTGATTGCATCTTC
TCAAAGCCGTTATACTTTTCAATCCAATCAATTTCATTGCATATTCATCT
CAAATTTGTTTTTGGCACTAAAACCATTCCTAACGTTATTTTATTCATCA
AGAGTTGGCCATTTTAGCTGATCTCAAAATTAAATGGTTTTTGTGAAAAG
CGACTCACAAAAATTAACTGACAGAAATACACTCTGGTTTGGCAGTCTAA
TTAGTGTATCAAACCTGGGCTGGACTTGGAAAATGTTAGTTTGCTGGCAG
CCTACCTACTCTGCCAACCTAAAAACtgaatcgcaaaatttaatacgCGC
GAAAATTTCCTGAAACTGGCAATCGCAAAATTTCACGggaaatataatac
caataaggtacctccaaaatctagggtcagtTGATGGCAACCAAGAATTT
GTCCTGACCTGTTTATTCTTCTTGTGGTAACTAATTAATTTTTAGCAATT
AATGAACAACCTATAGAAGGAGTATTTTGGAAGAATTAATCAGACTTTCA
CATTTGGAAACTTTTTCGAGAGTAACTAAAGGCTGaaaagtcagcaaaat
ttgcaaaacttatataaaaatgtcaaaatcttTGTATTGGGATGTCAACA
AGACTACCTGAACTTTTAACCTTACAAGCtgctcatttaaaaaaaaagtt
ttttctaccttaagggaagaaacttTTGTGACAACAACAATATTCTCAGG
ATTAAAAAGATATAacattggtctttttagggaaaaataggccattttgt
aaacaaaaaactcaactaccaaattaaattcattgaaacTTTCGAATTCC
GAGCAGTGAACCGCAAAATAAAATTatgtgaaaataaaattctGTGGAAA
TAGCTGCCTTTATATGATATACAATATTTTGATCAACCTCATTACAGGGA
ACATGAGAACAATCCTATTGAAAGTATTTGTACTGCAGATGTCTGATTTT
GTAATCTGTGTTATATTTTTCAGACTTGCAAGATTAGTTTCACGAGACTT
CGATTCGAGGAAAGCGTTTTACGATTCAATAACAACATTCGGAAAAGGGA
TGAAAATCCACGTGGACACCATTGTAAATGCTCAGATATTGAGCGATTTC
TATCGGCATTTGGAAACCCACGGCGACGAGGAGTTAAAAATCTATAGAAT
GGCTGATATAATCGGAGTCATAGAGGACACCTTAGTCCTTTCAAATGATG
TAAGTAATTATTATAATTATTCCCTCTTGTTTttgttgtaaatatttcct
CTCTTGTTTATATATTTCTGACACAAATCAATTTGAGAAATCTTTAAACA
AAGCCCACTTTAGTCGTGATTGAAAACCTGAAGTCTGAATTTATAATGAC
AGATTTTACTCAATACTACCTCTTTTAGATGCAAATAAGAGGTGGGAGAT
TGGTACCTCAGATGGACG

Coding sequence (CDS) from alignment at scaffold_440:132147..134664+

>TCONS_00065551 ID=TCONS_00065551|Name=TCONS_00065551|organism=Clytia hemisphaerica|type=CDS|length=2076bp|location=Sequence derived from alignment at scaffold_440:132147..134664+ (Clytia hemisphaerica)
AAATCCTGTTGGAAGGTGTGTAACGAGATGAGTACGGAGATTGAAGATGA
AAACATTTACGAAAATGTTGTCCCAAATTCAGAATTTGTAATCGTCAATG
GATGCACCTTTCGAAAGGTTAACAGGGAcatcaaatatattttatctTTT
ACACTGAAGAAAGTGGGAATCCTTACCATACCTGGTAAACCCGTGGAAAC
TGTATACCACTTAAAAAGTCATGATCCCTTGAATGATGGAACAATGTTGT
GCAGACTTGCAAGATTAGTTTCACGAGACTTCGATTCGAGGAAAGCGTTT
TACGATTCAATAACAACATTCGGAAAAGGGATGAAAATCCACGTGGACAC
CATTGTAAATGCTCAGATATTGAGCGATTTCTATCGGCATTTGGAAACCC
ACGGCGACGAGGAGTTAAAAATCTATAGAATGGCTGATATAATCGGAGTC
ATAGAGGACACCTTAGTCCTTTCAAATGATATGCAAATAAGAGGTGGGAG
ATTGGTACCTCAGATGGACAAATCCTGTTGGAAGGTGTGTAACGAGATGA
GTACGGAGATTGAAGATGAAAACATTTACGAAAATGTTGTCCCAAATTCA
GAATTTGTAATCGTCAATGGATGCACCTTTCGAAAGGTTAACAGGGAcat
caaatatattttatctTTTACACTGAAGAAAGTGGGAATCCTTACCATAC
CTGGTAAACCCGTGGAAACTGTATACCACTTAAAAAGTCATGATCCCTTG
AATGATGGAACAATGTTGTGCAGACTTGCAAGATTAGTTTCACGAGACTT
CGATTCGAGGAAAGCGTTTTACGATTCAATAACAACATTCGGAAAAGGGA
TGAAAATCCACGTGGACACCATTGTAAATGCTCAGATATTGAGCGATTTC
TATCGGCATTTGGAAACCCACGGCGACGAGGAGTTAAAAATCTATAGAAT
GGCTGATATAATCGGAGTCATAGAGGACACCTTAGTCCTTTCAAATGATA
TGCAAATAAGAGGTGGGAGATTGGTACCTCAGATGGACAAATCCTGTTGG
AAGGTGTGTAACGAGATGAGTACGGAGATTGAAGATGAAAACATTTACGA
AAATGTTGTCCCAAATTCAGAATTTGTAATCGTCAATGGATGCACCTTTC
GAAAGGTTAACAGGGAcatcaaatatattttatctTTTACACTGAAGAAA
GTGGGAATCCTTACCATACCTGGTAAACCCGTGGAAACTGTATACCACTT
AAAAAGTCATGATCCCTTGAATGATGGAACAATGTTGTGCAGACTTGCAA
GATTAGTTTCACGAGACTTCGATTCGAGGAAAGCGTTTTACGATTCAATA
ACAACATTCGGAAAAGGGATGAAAATCCACGTGGACACCATTGTAAATGC
TCAGATATTGAGCGATTTCTATCGGCATTTGGAAACCCACGGCGACGAGG
AGTTAAAAATCTATAGAATGGCTGATATAATCGGAGTCATAGAGGACACC
TTAGTCCTTTCAAATGATATGCAAATAAGAGGTGGGAGATTGGTACCTCA
GATGGACAAATCCTGTTGGAAGGTGTGTAACGAGATGAGTACGGAGATTG
AAGATGAAAACATTTACGAAAATGTTGTCCCAAATTCAGAATTTGTAATC
GTCAATGGATGCACCTTTCGAAAGGTTAACAGGGAcatcaaatatatttt
atctTTTACACTGAAGAAAGTGGGAATCCTTACCATACCTGGTAAACCCG
TGGAAACTGTATACCACTTAAAAAGTCATGATCCCTTGAATGATGGAACA
ATGTTGTGCAGACTTGCAAGATTAGTTTCACGAGACTTCGATTCGAGGAA
AGCGTTTTACGATTCAATAACAACATTCGGAAAAGGGATGAAAATCCACG
TGGACACCATTGTAAATGCTCAGATATTGAGCGATTTCTATCGGCATTTG
GAAACCCACGGCGACGAGGAGTTAAAAATCTATAGAATGGCTGATATAAT
CGGAGTCATAGAGGACACCTTAGTCCTTTCAAATGATATGCAAATAAGAG
GTGGGAGATTGGTACCTCAGATGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041081XLOC_041081Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065551-exon-scaffold_440-1491911889:132147..132213TCONS_00065551-exon-scaffold_440-1491911889:132147..132213Clytia hemisphaericaexon
TCONS_00065551-exon-scaffold_440-1510915933:132147..132213TCONS_00065551-exon-scaffold_440-1510915933:132147..132213Clytia hemisphaericaexon
TCONS_00065551-exon-scaffold_440-1575043694:132147..132213TCONS_00065551-exon-scaffold_440-1575043694:132147..132213Clytia hemisphaericaexon
TCONS_00065551-exon-scaffold_440-1491911889:132990..133177TCONS_00065551-exon-scaffold_440-1491911889:132990..133177Clytia hemisphaericaexon
TCONS_00065551-exon-scaffold_440-1510915933:132990..133177TCONS_00065551-exon-scaffold_440-1510915933:132990..133177Clytia hemisphaericaexon
TCONS_00065551-exon-scaffold_440-1575043694:132990..133177TCONS_00065551-exon-scaffold_440-1575043694:132990..133177Clytia hemisphaericaexon
TCONS_00065551-exon-scaffold_440-1491911889:134220..134445TCONS_00065551-exon-scaffold_440-1491911889:134220..134445Clytia hemisphaericaexon
TCONS_00065551-exon-scaffold_440-1510915933:134220..134445TCONS_00065551-exon-scaffold_440-1510915933:134220..134445Clytia hemisphaericaexon
TCONS_00065551-exon-scaffold_440-1575043694:134220..134445TCONS_00065551-exon-scaffold_440-1575043694:134220..134445Clytia hemisphaericaexon
TCONS_00065551-exon-scaffold_440-1491911889:134625..134664TCONS_00065551-exon-scaffold_440-1491911889:134625..134664Clytia hemisphaericaexon
TCONS_00065551-exon-scaffold_440-1510915933:134625..134664TCONS_00065551-exon-scaffold_440-1510915933:134625..134664Clytia hemisphaericaexon
TCONS_00065551-exon-scaffold_440-1575043694:134625..134664TCONS_00065551-exon-scaffold_440-1575043694:134625..134664Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065551-proteinTCONS_00065551-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:132147..134664 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.341132	0.887087	0.257498	0.251922	2.91356	3.02939	2.70935	2.60042	1.05404	3.18719	0.460817	0.530115	0.605003	0.942453	0.94601	0.941874	2.04869	1.22491	0.241754	0.379467	1.27985	0.482633	0.782271	0.711198	0.122086	0.435836	0.15592	0	0.12621	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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