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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065550 ID=TCONS_00065550|Name=TCONS_00065550|organism=Clytia hemisphaerica|type=transcript|length=1023bp
GGGACTAGTGGATGCAGCTAGTGATGAAATGTTCGACCAACTATTGATTC
CCCTGGTTGAGACTTGGAACGAACGAGAAACAAAAATTAGGAAACTAAAA
TGTGGCAAAGACGCCAAGTTTGCTGATTACTTTATCAAAAACATTAGTTT
GGATATCTTGCTCATGCAAAACGAAGATAACTTCTTCTATAACAATGCTA
GTGAAAGCATTAATGACCGCATCAAAGAAATCGTTCACCAAAGCAATGCA
AATAAGACGGCTTCCGGTCAACCAAAGCAGAATTGTACTTGGGTACAATT
TGTCAGTCTGTATAAAGGTTATGTCGACTGTGTGCAAAGGAATATTCACC
GAAGCATCATTGGAGACAGTGCCACCTACCTTCTCTCAAATGAGGTCTTG
CAGTTCGGTTTGGCCCCACACACTTTTCGTATGTTAAGTAGAGAGCAGCA
AAATCAGAGAATCAACATACTCGACTCAACCCACAAAATCAAAGGACCTG
CAACGCCCGCCTTGAATGAAGCTTCTGGTGCATTCTCATCGAATACTGTA
TCGCCAAGTCCAGAAGTAATTACAATTGATTCCGATGAGGAATCTCTTGA
TTTCCCACCATTCGCTACAACAGACTTGCCGTCCTTTTTGGCACCAACAT
GGAAAAAGCCAGCTGATATTTTGAAGGTGAAAGATGGTATTGTGCCATCC
CCTGGacaaaaggaaacaaaaattgTAATCTCCTTTTCGGACAAGTCGGA
CCCACGCTTCGTCTCTCACAAAAATGCAAATTCCCAATGTCAATGTCCTG
GGTTTAAAAAGGAAGGAGTTTGTGCGCATACAATTTCTGTTGGACACCAT
GTTGGAAAATTGCCTCTCCTACTGAAGTCCTTTTTTAATCTTACAAAGGC
TGCACAACCACTTCTGCATAAAAAAAGCTGGCAGAAAGCCGAATGAAACG
ACAAGAAAGAGGAAAGCAACAAAAGAACGCGATGTTGATACTATGCAAGA
ACACCCACTCCTTGACAATGGCA Run BLAST on NCBI protein sequence of TCONS_00065550-protein >TCONS_00065550-protein ID=TCONS_00065550-protein|Name=TCONS_00065550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
GLVDAASDEMFDQLLIPLVETWNERETKIRKLKCGKDAKFADYFIKNISL
DILLMQNEDNFFYNNASESINDRIKEIVHQSNANKTASGQPKQNCTWVQF
VSLYKGYVDCVQRNIHRSIIGDSATYLLSNEVLQFGLAPHTFRMLSREQQ
NQRINILDSTHKIKGPATPALNEASGAFSSNTVSPSPEVITIDSDEESLD
FPPFATTDLPSFLAPTWKKPADILKVKDGIVPSPGQKETKIVISFSDKSD
PRFVSHKNANSQCQCPGFKKEGVCAHTISVGHHVGKLPLLLKSFFNLTKA
AQPLLHKKSWQKAE Run BLAST on NCBI transcript from alignment at scaffold_440:126512..128313+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065550 ID=TCONS_00065550|Name=TCONS_00065550|organism=Clytia hemisphaerica|type=transcript|length=1802bp|location=Sequence derived from alignment at scaffold_440:126512..128313+ (Clytia hemisphaerica)
GGGACTAGTGGATGCAGCTAGTGATGAAATGTTCGACCAACTATTGATTC
CCCTGGTTGAGACTTGGAACGAACGAGAAACAAAAATTAGGAAACTAAAA
TGTGGCAAAGACGCCAAGTTTGCTGATTACTTTATCAAAAACATTAGTTT
GGATATCTTGCTCATGCAAAACGAAGATAACTTCTTCTATAACAATGCTA
GTGAAAGCATTAATGACCGCATCAAAGAAATCGTTCACCAAAGCAATGCA
AATAAGACGGCTTCCGGTCAACCAAAGCAGAATTGTACTTGGGTACAATT
TGTCAGTCTGTATAAAGTAAGTTCAATGTATTTGAACCTCGATTTGTATT
ACTCAAATTTGTAATTAATCAagtacatttttaaaaaaagctgagtttat
tttaaaatgatttttatctCCAAGTAAATCCTGATGGCTTCGCGTTTGGC
ACATAATCACTGTAATGGTCATTGCTTCGTAAATAGAATAATCAgtcttt
ttcatccagatttccAAAAAGATTAGATTAGACTTAGATTTGATCGTTTT
GACTAAACAACCATGTCAGATTGTCACACTCGGTCGGAACATTCCGTCAA
CAGAGCGTGATGTGCGTAAAATAGATGATTTGTTGTGAAATTATTCAATT
ATAAGAATTCcttgtttttttggacccacccccgtagaggtcctataaat
tagcTCATGTTCGTGCGTTCTTACGTGCGTTTGCTACCAGcttgagattg
gctcattcaaaatttctgattttcGGCACAAAGGTGAATGCATGACTAAA
AACCCTCAAATGTTACTgagtccgattttcaaaaaacaaatttttaggca
aatgtaggccaaaaaacggcaaaaattaTTGAAGAGTTTTTTGGACTAAT
TGGATCATTAgttatttttctgaattttttgcacgaaagtagggttTCAT
TGATAGCTCAAGCAGCAGATTTTTGAAGTTtcggtttctaaacgtttttt
tataagaaacaaacaacgaattttaatagatcgtcactatgtgttaaatg
tgcataaccaggtaggccCATAAAAGCATCGCTTGTTATTTTTAGGGTTA
TGTCGACTGTGTGCAAAGGAATATTCACCGAAGCATCATTGGAGACAGTG
CCACCTACCTTCTCTCAAATGAGGTCTTGCAGTTCGGTTTGGCCCCACAC
ACTTTTCGTATGTTAAGTAGAGAGCAGCAAAATCAGAGAATCAACATACT
CGACTCAACCCACAAAATCAAAGGACCTGCAACGCCCGCCTTGAATGAAG
CTTCTGGTGCATTCTCATCGAATACTGTATCGCCAAGTCCAGAAGTAATT
ACAATTGATTCCGATGAGGAATCTCTTGATTTCCCACCATTCGCTACAAC
AGACTTGCCGTCCTTTTTGGCACCAACATGGAAAAAGCCAGCTGATATTT
TGAAGGTGAAAGATGGTATTGTGCCATCCCCTGGacaaaaggaaacaaaa
attgTAATCTCCTTTTCGGACAAGTCGGACCCACGCTTCGTCTCTCACAA
AAATGCAAATTCCCAATGTCAATGTCCTGGGTTTAAAAAGGAAGGAGTTT
GTGCGCATACAATTTCTGTTGGACACCATGTTGGAAAATTGCCTCTCCTA
CTGAAGTCCTTTTTTAATCTTACAAAGGCTGCACAACCACTTCTGCATAA
AAAAAGCTGGCAGAAAGCCGAATGAAACGACAAGAAAGAGGAAAGCAACA
AAAGAACGCGATGTTGATACTATGCAAGAACACCCACTCCTTGACAATGG
CA Coding sequence (CDS) from alignment at scaffold_440:126512..128313+ >TCONS_00065550 ID=TCONS_00065550|Name=TCONS_00065550|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_440:126512..128313+ (Clytia hemisphaerica)
GGACTAGTGGATGCAGCTAGTGATGAAATGTTCGACCAACTATTGATTCC
CCTGGTTGAGACTTGGAACGAACGAGAAACAAAAATTAGGAAACTAAAAT
GTGGCAAAGACGCCAAGTTTGCTGATTACTTTATCAAAAACATTAGTTTG
GATATCTTGCTCATGCAAAACGAAGATAACTTCTTCTATAACAATGCTAG
TGAAAGCATTAATGACCGCATCAAAGAAATCGTTCACCAAAGCAATGCAA
ATAAGACGGCTTCCGGTCAACCAAAGCAGAATTGTACTTGGGTACAATTT
GTCAGTCTGTATAAAGGTTATGTCGACTGTGTGCAAAGGAATATTCACCG
AAGCATCATTGGAGACAGTGCCACCTACCTTCTCTCAAATGAGGTCTTGC
AGTTCGGTTTGGCCCCACACACTTTTCGTATGTTAAGTAGAGAGCAGCAA
AATCAGAGAATCAACATACTCGACTCAACCCACAAAATCAAAGGACCTGC
AACGCCCGCCTTGAATGAAGCTTCTGGTGCATTCTCATCGAATACTGTAT
CGCCAAGTCCAGAAGTAATTACAATTGATTCCGATGAGGAATCTCTTGAT
TTCCCACCATTCGCTACAACAGACTTGCCGTCCTTTTTGGCACCAACATG
GAAAAAGCCAGCTGATATTTTGAAGGTGAAAGATGGTATTGTGCCATCCC
CTGGacaaaaggaaacaaaaattgTAATCTCCTTTTCGGACAAGTCGGAC
CCACGCTTCGTCTCTCACAAAAATGCAAATTCCCAATGTCAATGTCCTGG
GTTTAAAAAGGAAGGAGTTTGTGCGCATACAATTTCTGTTGGACACCATG
TTGGAAAATTGCCTCTCCTACTGAAGTCCTTTTTTAATCTTACAAAGGCT
GCACAACCACTTCTGCATAAAAAAAGCTGGCAGAAAGCCGAATGAGGACT
AGTGGATGCAGCTAGTGATGAAATGTTCGACCAACTATTGATTCCCCTGG
TTGAGACTTGGAACGAACGAGAAACAAAAATTAGGAAACTAAAATGTGGC
AAAGACGCCAAGTTTGCTGATTACTTTATCAAAAACATTAGTTTGGATAT
CTTGCTCATGCAAAACGAAGATAACTTCTTCTATAACAATGCTAGTGAAA
GCATTAATGACCGCATCAAAGAAATCGTTCACCAAAGCAATGCAAATAAG
ACGGCTTCCGGTCAACCAAAGCAGAATTGTACTTGGGTACAATTTGTCAG
TCTGTATAAAGGTTATGTCGACTGTGTGCAAAGGAATATTCACCGAAGCA
TCATTGGAGACAGTGCCACCTACCTTCTCTCAAATGAGGTCTTGCAGTTC
GGTTTGGCCCCACACACTTTTCGTATGTTAAGTAGAGAGCAGCAAAATCA
GAGAATCAACATACTCGACTCAACCCACAAAATCAAAGGACCTGCAACGC
CCGCCTTGAATGAAGCTTCTGGTGCATTCTCATCGAATACTGTATCGCCA
AGTCCAGAAGTAATTACAATTGATTCCGATGAGGAATCTCTTGATTTCCC
ACCATTCGCTACAACAGACTTGCCGTCCTTTTTGGCACCAACATGGAAAA
AGCCAGCTGATATTTTGAAGGTGAAAGATGGTATTGTGCCATCCCCTGGa
caaaaggaaacaaaaattgTAATCTCCTTTTCGGACAAGTCGGACCCACG
CTTCGTCTCTCACAAAAATGCAAATTCCCAATGTCAATGTCCTGGGTTTA
AAAAGGAAGGAGTTTGTGCGCATACAATTTCTGTTGGACACCATGTTGGA
AAATTGCCTCTCCTACTGAAGTCCTTTTTTAATCTTACAAAGGCTGCACA
ACCACTTCTGCATAAAAAAAGCTGGCAGAAAGCCGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065550-exon-scaffold_440-1491911889:126512..126827 | TCONS_00065550-exon-scaffold_440-1491911889:126512..126827 | Clytia hemisphaerica | exon |
| TCONS_00065550-exon-scaffold_440-1510915933:126512..126827 | TCONS_00065550-exon-scaffold_440-1510915933:126512..126827 | Clytia hemisphaerica | exon |
| TCONS_00065550-exon-scaffold_440-1575043694:126512..126827 | TCONS_00065550-exon-scaffold_440-1575043694:126512..126827 | Clytia hemisphaerica | exon |
| TCONS_00065550-exon-scaffold_440-1491911889:127607..128313 | TCONS_00065550-exon-scaffold_440-1491911889:127607..128313 | Clytia hemisphaerica | exon |
| TCONS_00065550-exon-scaffold_440-1510915933:127607..128313 | TCONS_00065550-exon-scaffold_440-1510915933:127607..128313 | Clytia hemisphaerica | exon |
| TCONS_00065550-exon-scaffold_440-1575043694:127607..128313 | TCONS_00065550-exon-scaffold_440-1575043694:127607..128313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_440 | supercontig | scaffold_440:126512..128313 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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