TCONS_00065549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065549
Unique NameTCONS_00065549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065549 ID=TCONS_00065549|Name=TCONS_00065549|organism=Clytia hemisphaerica|type=transcript|length=282bp
GTTCAGCTCGCTTTTTTTGATTTGTAGCCTTCATTTGATTTCAAAAGCAC
GATTGAAAGACGAAGTCAATATTTcagcaaaaaagaaatttgaatattga
aaaGATGTTCATGGttgttaaaattgaaatatgttTTTACTTTTACCATT
TAGACCCTAATGCTGATGGCGTAGACAATCGGAGAAAGTGAGTAGGAAAT
TTCGGATATGACAAATCAAAGATAATGTGTATTCTGTACGGTTGAATAGA
TAATCTTTTAAATTCATCTGGAAAGCCAATAA
Run BLAST on NCBI

transcript from alignment at scaffold_44:358531..358812

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065549 ID=TCONS_00065549|Name=TCONS_00065549|organism=Clytia hemisphaerica|type=transcript|length=282bp|location=Sequence derived from alignment at scaffold_44:358531..358812 (Clytia hemisphaerica)
TTATTGGCTTTCCAGATGAATTTAAAAGATTATCTATTCAACCGTACAGA
ATACACATTATCTTTGATTTGTCATATCCGAAATTTCCTACTCACTTTCT
CCGATTGTCTACGCCATCAGCATTAGGGTCTAAATGGTAAAAGTAAAaac
atatttcaattttaacaaCCATGAACATCttttcaatattcaaatttctt
ttttgctgAAATATTGACTTCGTCTTTCAATCGTGCTTTTGAAATCAAAT
GAAGGCTACAAATCAAAAAAAGCGAGCTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041079XLOC_041079Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065549-exon-scaffold_44-1491911889:358531..358812TCONS_00065549-exon-scaffold_44-1491911889:358531..358812Clytia hemisphaericaexon
TCONS_00065549-exon-scaffold_44-1510915933:358531..358812TCONS_00065549-exon-scaffold_44-1510915933:358531..358812Clytia hemisphaericaexon
TCONS_00065549-exon-scaffold_44-1575043694:358531..358812TCONS_00065549-exon-scaffold_44-1575043694:358531..358812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:358531..358812 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	1.02665	6.19308	4.05852	2.49712	0.555322	0.687478	1.33684	1.37149	2.66163	2.08879	1.86568	1.90699	2.36954	4.0965	0.535837	1.50394	0.681515	0.842906	0.886395	2.06874	2.76945	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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