TCONS_00065548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065548
Unique NameTCONS_00065548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065548 ID=TCONS_00065548|Name=TCONS_00065548|organism=Clytia hemisphaerica|type=transcript|length=281bp
CTTAGCGTAGATCTCAGCTAGCTGGATTTCGTGAGCTCGATTTTTTACGG
TTTCTTGTTCTTTGTGGCGTAAGAAGAGATCGTAAGTTTTGAAGTCCGCC
TCTATGATCATACGTTGGCGTTTCATCTGAAGTTCGGCCAACTGTTTCAA
ACCATCAGCTAAACTGACTACACTTTTATTCGAATCCACTAGGGCGGGAG
CAGGTGACCCGTGGGGCGGGGTGGGCGCCGAATCATAATAGGACATGCGT
TGGCGTTTGTACGGGTATTGAAAATCAGTGA
Run BLAST on NCBI

transcript from alignment at scaffold_44:324426..324706

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065548 ID=TCONS_00065548|Name=TCONS_00065548|organism=Clytia hemisphaerica|type=transcript|length=281bp|location=Sequence derived from alignment at scaffold_44:324426..324706 (Clytia hemisphaerica)
TCACTGATTTTCAATACCCGTACAAACGCCAACGCATGTCCTATTATGAT
TCGGCGCCCACCCCGCCCCACGGGTCACCTGCTCCCGCCCTAGTGGATTC
GAATAAAAGTGTAGTCAGTTTAGCTGATGGTTTGAAACAGTTGGCCGAAC
TTCAGATGAAACGCCAACGTATGATCATAGAGGCGGACTTCAAAACTTAC
GATCTCTTCTTACGCCACAAAGAACAAGAAACCGTAAAAAATCGAGCTCA
CGAAATCCAGCTAGCTGAGATCTACGCTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041078XLOC_041078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065548-exon-scaffold_44-1491911889:324426..324706TCONS_00065548-exon-scaffold_44-1491911889:324426..324706Clytia hemisphaericaexon
TCONS_00065548-exon-scaffold_44-1510915933:324426..324706TCONS_00065548-exon-scaffold_44-1510915933:324426..324706Clytia hemisphaericaexon
TCONS_00065548-exon-scaffold_44-1575043694:324426..324706TCONS_00065548-exon-scaffold_44-1575043694:324426..324706Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:324426..324706 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.5038	6.92079	3.2102	1.29799	2.05887	0.429358	0	0.142355	0.526444	0.142747	0	0.140323	0	0	0.0608442	0.648739	3.14837	0	2.02376	0.653805	1.23623	0	9.00205	6.68905	5.78253	7.89884	4.64785	0.697588	0	4.84479
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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