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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065547 ID=TCONS_00065547|Name=TCONS_00065547|organism=Clytia hemisphaerica|type=transcript|length=2201bp
GTATAATATCTTTTTTCCCTAACTAtctaaataaatcaaaactttacgAC
ATCCCTCTCTCTATATATGAAAATAGTAATATAAACTATGAAAAATCAAC
AATTAGCCATTGATAAACGAGACTCAATATTCGAACacttaagaaaagaa
aatctaatttgttcgagttacagagagtCCGAGTTACGGTGAGTTAGAGT
TACAGAGGTTTAAATTAAACATCTTTTTAGCAGTCACATGGTGCAGTCTG
TTAAATTGAGACCTCAGTTACGGCGAGTTAGAGTTACGGAGACGTGTTGA
TAACCGAAGGAGAACCCTACAATCCGCGTTATAGAGGTTCAATGGCACTT
TTCAGGGgattcaaaagatttttccaaaacaaaacTACAGCtacaaaata
ttaacaaaaagaCCAAGATGAACAAGAACAAGAAATCTCCAAAAATCAAC
GAAGATACTAATCGACCTGTGTCAGATAAACAAACCTatgaatgaaacaa
aaacatataatataaaaaacCTACAATAGCCTCGTTTNACAAACCTATGA
ATGAAACAACAACATATAATATAAAAGAACCTACAATAGCCTCGTTTTAG
TAGTTGAAAGTATATTATTGAGTGGAGACTGCGATCATAAGATCATAAGA
ATGATCCAAACATGTTACTGGTCGCCACGAAAAGAGCTCCCACCACTGTG
GGACGATGTGAAAGATGGCGGAGATACCATTTCGTGCTCCACTTCAGTCA
AAGTCTTATAAACAGCCTGCTCGGTAAGATGGGGGTGGCTAGAGTTGTTA
TATTCTTCCTGAGTGCTGCGGCTCCGTTTTAAGGGTGGCTCCACGGAGGC
GTAGTGGGCCACAACACCTGTTAACGCCTTAGCGTAGATCTCAGCTAGCT
GGATTTCGTGAGCTCGATTTTTTACGGTTTCTTGTTCTTTGTGGCGTAAG
AAGAGATCGTAAGTTTTGAAGTCCGCCTCTATGATCATACGTTGGCGTTT
CATCTGAAGTTCGGCCAACTGTTTCAAACCATCAGCTAAACTGACTACAC
TTTTATTCGAATCCACTAGGGCGGGAGCAGGTGACCCGTGGGGCGGGGTG
GGCGCCGAATCATAATAGGACATGCGTTGGCGTTTGTACGGGTATTGAAA
ATCAGTGACATCTGAAGAATTCGGGCGGGTTGTCGAATTGACCGGATAGG
ATCCATTACCGTTGTTGAAAAGAGCAGGCGAGTGTCTATCTAAGCTTCGG
GTAGTCTCGTCACGAGTATGAAAGTCCGGTTCTCTATCTCGACTACTGTA
AGAAGATGATGGGTGCTTGAAAGGATATTCTCTGACATGCTGCGAAGAGC
CATTATGCGACAAACTGTTACTGTTGTTACTATACAATGGAGAATGATTC
TCATGATGGCCGATTGTTGATCGGTTGCTAATGACAACGAAAGTTGGCTC
TTCAAGCTCATCCACGTGGTTTGAGAAGCGGCCTTCGTGTTGTGATCTAG
GCTCGATGTGATCGCTCATCTCATTGGGCGAGCGTGGAGAAGCCCTGTCT
TTAGGCTCACAAATTTGGCTATTAGAAACTGACAAGGTCATCTTGTTGAC
TTTCTCACTTTCGATTTTTATATCCGTCATCAGTTTCTGGACGGACCGAT
ACCATCGTGGTTCCGGAAAATGGTCCATCACTTCGGCCTTGCGGACCCGA
TCGGTGGACATTCGTCGCCACTCCACCTTCAAGTTACTGTACTTCTTACG
TAATTTCTCGATAGATAAATCTAAACTCATGGAATACTCGAACCCTGGCA
ATCGATTCCTGTGTCGTTCTTTCAACTCGCGACGATACACGTTACGAATG
TTGGTGAATAACTCATAGTTTGAACGTTTCTTAGGTACCAAGTTTTCCAG
AGATGCAGCAAACATATACCGAGGATCTcctaaaatcttcaaaaataaat
cGACCTCTTCGTCTGACCATTTTCGTGATCGAGTTCGTTTTTCCTTCTCC
TCGACGCCGCCAATGGCACCTCCAGATACGTCACCGTTGTGGATACCGTT
AGAGGCGTGTGGCGAGGGCGTAATATACATATCGTTTGGTAAGTCTCTAT
TATTGCTACTAGGACTCGAAGACATTGTTTCGTAATTTTCGTGTTTCATC
ATGGagaatttttcaatctttttcagtGTTAAATTAGTTTTATTtgctaa
a Run BLAST on NCBI protein sequence of TCONS_00065547-protein >TCONS_00065547-protein ID=TCONS_00065547-protein|Name=TCONS_00065547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=511bp
LANKTNLTLKKIEKFSMMKHENYETMSSSPSSNNRDLPNDMYITPSPHAS
NGIHNGDVSGGAIGGVEEKEKRTRSRKWSDEEVDLFLKILGDPRYMFAAS
LENLVPKKRSNYELFTNIRNVYRRELKERHRNRLPGFEYSMSLDLSIEKL
RKKYSNLKVEWRRMSTDRVRKAEVMDHFPEPRWYRSVQKLMTDIKIESEK
VNKMTLSVSNSQICEPKDRASPRSPNEMSDHIEPRSQHEGRFSNHVDELE
EPTFVVISNRSTIGHHENHSPLYSNNSNSLSHNGSSQHVREYPFKHPSSS
YSSRDREPDFHTRDETTRSLDRHSPALFNNGNGSYPVNSTTRPNSSDVTD
FQYPYKRQRMSYYDSAPTPPHGSPAPALVDSNKSVVSLADGLKQLAELQM
KRQRMIIEADFKTYDLFLRHKEQETVKNRAHEIQLAEIYAKALTGVVAHY
ASVEPPLKRSRSTQEEYNNSSHPHLTEQAVYKTLTEVEHEMVSPPSFTSS
HSGGSSFRGDQ Run BLAST on NCBI transcript from alignment at scaffold_44:323383..325583 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065547 ID=TCONS_00065547|Name=TCONS_00065547|organism=Clytia hemisphaerica|type=transcript|length=2201bp|location=Sequence derived from alignment at scaffold_44:323383..325583 (Clytia hemisphaerica)
tttagcaAATAAAACTAATTTAACactgaaaaagattgaaaaattctCCA
TGATGAAACACGAAAATTACGAAACAATGTCTTCGAGTCCTAGTAGCAAT
AATAGAGACTTACCAAACGATATGTATATTACGCCCTCGCCACACGCCTC
TAACGGTATCCACAACGGTGACGTATCTGGAGGTGCCATTGGCGGCGTCG
AGGAGAAGGAAAAACGAACTCGATCACGAAAATGGTCAGACGAAGAGGTC
gatttatttttgaagattttaggAGATCCTCGGTATATGTTTGCTGCATC
TCTGGAAAACTTGGTACCTAAGAAACGTTCAAACTATGAGTTATTCACCA
ACATTCGTAACGTGTATCGTCGCGAGTTGAAAGAACGACACAGGAATCGA
TTGCCAGGGTTCGAGTATTCCATGAGTTTAGATTTATCTATCGAGAAATT
ACGTAAGAAGTACAGTAACTTGAAGGTGGAGTGGCGACGAATGTCCACCG
ATCGGGTCCGCAAGGCCGAAGTGATGGACCATTTTCCGGAACCACGATGG
TATCGGTCCGTCCAGAAACTGATGACGGATATAAAAATCGAAAGTGAGAA
AGTCAACAAGATGACCTTGTCAGTTTCTAATAGCCAAATTTGTGAGCCTA
AAGACAGGGCTTCTCCACGCTCGCCCAATGAGATGAGCGATCACATCGAG
CCTAGATCACAACACGAAGGCCGCTTCTCAAACCACGTGGATGAGCTTGA
AGAGCCAACTTTCGTTGTCATTAGCAACCGATCAACAATCGGCCATCATG
AGAATCATTCTCCATTGTATAGTAACAACAGTAACAGTTTGTCGCATAAT
GGCTCTTCGCAGCATGTCAGAGAATATCCTTTCAAGCACCCATCATCTTC
TTACAGTAGTCGAGATAGAGAACCGGACTTTCATACTCGTGACGAGACTA
CCCGAAGCTTAGATAGACACTCGCCTGCTCTTTTCAACAACGGTAATGGA
TCCTATCCGGTCAATTCGACAACCCGCCCGAATTCTTCAGATGTCACTGA
TTTTCAATACCCGTACAAACGCCAACGCATGTCCTATTATGATTCGGCGC
CCACCCCGCCCCACGGGTCACCTGCTCCCGCCCTAGTGGATTCGAATAAA
AGTGTAGTCAGTTTAGCTGATGGTTTGAAACAGTTGGCCGAACTTCAGAT
GAAACGCCAACGTATGATCATAGAGGCGGACTTCAAAACTTACGATCTCT
TCTTACGCCACAAAGAACAAGAAACCGTAAAAAATCGAGCTCACGAAATC
CAGCTAGCTGAGATCTACGCTAAGGCGTTAACAGGTGTTGTGGCCCACTA
CGCCTCCGTGGAGCCACCCTTAAAACGGAGCCGCAGCACTCAGGAAGAAT
ATAACAACTCTAGCCACCCCCATCTTACCGAGCAGGCTGTTTATAAGACT
TTGACTGAAGTGGAGCACGAAATGGTATCTCCGCCATCTTTCACATCGTC
CCACAGTGGTGGGAGCTCTTTTCGTGGCGACCAGTAACATGTTTGGATCA
TTCTTATGATCTTATGATCGCAGTCTCCACTCAATAATATACTTTCAACT
ACTAAAACGAGGCTATTGTAGGTTCTTTTATATTATATGTTGTTGTTTCA
TTCATAGGTTTGTNAAACGAGGCTATTGTAGgttttttatattatatgtt
tttgtttcattcatAGGTTTGTTTATCTGACACAGGTCGATTAGTATCTT
CGTTGATTTTTGGAGATTTCTTGTTCTTGTTCATCTTGGtctttttgtta
atattttgtaGCTGTAgttttgttttggaaaaatcttttgaatcCCCTGA
AAAGTGCCATTGAACCTCTATAACGCGGATTGTAGGGTTCTCCTTCGGTT
ATCAACACGTCTCCGTAACTCTAACTCGCCGTAACTGAGGTCTCAATTTA
ACAGACTGCACCATGTGACTGCTAAAAAGATGTTTAATTTAAACCTCTGT
AACTCTAACTCACCGTAACTCGGactctctgtaactcgaacaaattagat
tttcttttcttaagtGTTCGAATATTGAGTCTCGTTTATCAATGGCTAAT
TGTTGATTTTTCATAGTTTATATTACTATTTTCATATATAGAGAGAGGGA
TGTcgtaaagttttgatttatttagaTAGTTAGGGAAAAAAGATATTATA
C Coding sequence (CDS) from alignment at scaffold_44:323383..325583 >TCONS_00065547 ID=TCONS_00065547|Name=TCONS_00065547|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_44:323383..325583 (Clytia hemisphaerica)
ttagcaAATAAAACTAATTTAACactgaaaaagattgaaaaattctCCAT
GATGAAACACGAAAATTACGAAACAATGTCTTCGAGTCCTAGTAGCAATA
ATAGAGACTTACCAAACGATATGTATATTACGCCCTCGCCACACGCCTCT
AACGGTATCCACAACGGTGACGTATCTGGAGGTGCCATTGGCGGCGTCGA
GGAGAAGGAAAAACGAACTCGATCACGAAAATGGTCAGACGAAGAGGTCg
atttatttttgaagattttaggAGATCCTCGGTATATGTTTGCTGCATCT
CTGGAAAACTTGGTACCTAAGAAACGTTCAAACTATGAGTTATTCACCAA
CATTCGTAACGTGTATCGTCGCGAGTTGAAAGAACGACACAGGAATCGAT
TGCCAGGGTTCGAGTATTCCATGAGTTTAGATTTATCTATCGAGAAATTA
CGTAAGAAGTACAGTAACTTGAAGGTGGAGTGGCGACGAATGTCCACCGA
TCGGGTCCGCAAGGCCGAAGTGATGGACCATTTTCCGGAACCACGATGGT
ATCGGTCCGTCCAGAAACTGATGACGGATATAAAAATCGAAAGTGAGAAA
GTCAACAAGATGACCTTGTCAGTTTCTAATAGCCAAATTTGTGAGCCTAA
AGACAGGGCTTCTCCACGCTCGCCCAATGAGATGAGCGATCACATCGAGC
CTAGATCACAACACGAAGGCCGCTTCTCAAACCACGTGGATGAGCTTGAA
GAGCCAACTTTCGTTGTCATTAGCAACCGATCAACAATCGGCCATCATGA
GAATCATTCTCCATTGTATAGTAACAACAGTAACAGTTTGTCGCATAATG
GCTCTTCGCAGCATGTCAGAGAATATCCTTTCAAGCACCCATCATCTTCT
TACAGTAGTCGAGATAGAGAACCGGACTTTCATACTCGTGACGAGACTAC
CCGAAGCTTAGATAGACACTCGCCTGCTCTTTTCAACAACGGTAATGGAT
CCTATCCGGTCAATTCGACAACCCGCCCGAATTCTTCAGATGTCACTGAT
TTTCAATACCCGTACAAACGCCAACGCATGTCCTATTATGATTCGGCGCC
CACCCCGCCCCACGGGTCACCTGCTCCCGCCCTAGTGGATTCGAATAAAA
GTGTAGTCAGTTTAGCTGATGGTTTGAAACAGTTGGCCGAACTTCAGATG
AAACGCCAACGTATGATCATAGAGGCGGACTTCAAAACTTACGATCTCTT
CTTACGCCACAAAGAACAAGAAACCGTAAAAAATCGAGCTCACGAAATCC
AGCTAGCTGAGATCTACGCTAAGGCGTTAACAGGTGTTGTGGCCCACTAC
GCCTCCGTGGAGCCACCCTTAAAACGGAGCCGCAGCACTCAGGAAGAATA
TAACAACTCTAGCCACCCCCATCTTACCGAGCAGGCTGTTTATAAGACTT
TGACTGAAGTGGAGCACGAAATGGTATCTCCGCCATCTTTCACATCGTCC
CACAGTGGTGGGAGCTCTTTTCGTGGCGACCAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065547-exon-scaffold_44-1491911889:323383..325583 | TCONS_00065547-exon-scaffold_44-1491911889:323383..325583 | Clytia hemisphaerica | exon |
| TCONS_00065547-exon-scaffold_44-1510915933:323383..325583 | TCONS_00065547-exon-scaffold_44-1510915933:323383..325583 | Clytia hemisphaerica | exon |
| TCONS_00065547-exon-scaffold_44-1575043694:323383..325583 | TCONS_00065547-exon-scaffold_44-1575043694:323383..325583 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:323383..325583 . |
Blast
The following BLAST results are available for this feature:
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