TCONS_00065544 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065544
Unique NameTCONS_00065544
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065544 ID=TCONS_00065544|Name=TCONS_00065544|organism=Clytia hemisphaerica|type=transcript|length=694bp
TCGTCCTTTACAGACGCTCGTCAGAAATCATTTGTGttaaaatgttctga
aaacATAGCTTGTTTAATACTATTGAAAGAGTGGCATTTCTGAATTAATG
GGTATAGATTAGGTTTCAGTGTTTTCACTGATGTTCTGCCCTACCAAGCA
AAATAACAATTTTGCGTTTATCATAAACTTTGATACGATCCATAAATCCG
AAGGATGTTCAATCGATAAGACTTTTAAGTTGTCCATCCATTACGCCATT
TGAAATATGTTAACgttattttttataatatagGTACTCTGGAAGAAGGT
GGAAGATGAAATATGAAATACGGAActcaatttttgatttgaaacaAATG
AACTACTACTGGGATAATACTTTGAGCCCTTTTAGTATTTGATAGTTTTA
CGATCCATTGAAGATTTATAAGccaaataaatacaaaaaaattcagCTAG
AAAAATCACTGGGGTTTGAGGAAAGATTAATTGTATCTtatatttcgata
ttttcgTGATCTTTTGTTAGTAGGAAGAAAGGTGCAAAATCTAATATCTA
GAATGGTTATATAAACAGCTGTATTCAGGTTCAAGATTATATTCAACTAT
ACAAGGCTCCCTAATATGGTTTTATGGTCCAAGTGCCATTGTGAAATtcg
aaatatcaaattttaagtttctcACACCGATTACACAAGtgaac
Run BLAST on NCBI

transcript from alignment at scaffold_44:236649..237342

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065544 ID=TCONS_00065544|Name=TCONS_00065544|organism=Clytia hemisphaerica|type=transcript|length=694bp|location=Sequence derived from alignment at scaffold_44:236649..237342 (Clytia hemisphaerica)
gttcaCTTGTGTAATCGGTGTgagaaacttaaaatttgatatttcgaATT
TCACAATGGCACTTGGACCATAAAACCATATTAGGGAGCCTTGTATAGTT
GAATATAATCTTGAACCTGAATACAGCTGTTTATATAACCATTCTAGATA
TTAGATTTTGCACCTTTCTTCCTACTAACAAAAGATCAcgaaaatatcga
aatataAGATACAATTAATCTTTCCTCAAACCCCAGTGATTTTTCTAGct
gaatttttttgtatttatttggCTTATAAATCTTCAATGGATCGTAAAAC
TATCAAATACTAAAAGGGCTCAAAGTATTATCCCAGTAGTAGTTCATTtg
tttcaaatcaaaaattgagTTCCGTATTTCATATTTCATCTTCCACCTTC
TTCCAGAGTACctatattataaaaaataacGTTAACATATTTCAAATGGC
GTAATGGATGGACAACTTAAAAGTCTTATCGATTGAACATCCTTCGGATT
TATGGATCGTATCAAAGTTTATGATAAACGCAAAATTGTTATTTTGCTTG
GTAGGGCAGAACATCAGTGAAAACACTGAAACCTAATCTATACCCATTAA
TTCAGAAATGCCACTCTTTCAATAGTATTAAACAAGCTATgttttcagaa
cattttaaCACAAATGATTTCTGACGAGCGTCTGTAAAGGACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041075XLOC_041075Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065544-exon-scaffold_44-1491911889:236649..237342TCONS_00065544-exon-scaffold_44-1491911889:236649..237342Clytia hemisphaericaexon
TCONS_00065544-exon-scaffold_44-1510915933:236649..237342TCONS_00065544-exon-scaffold_44-1510915933:236649..237342Clytia hemisphaericaexon
TCONS_00065544-exon-scaffold_44-1575043694:236649..237342TCONS_00065544-exon-scaffold_44-1575043694:236649..237342Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:236649..237342 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.07315	0.142666	0	0.0810305	0.0986468	0	0.282138	0.528268	0.0616421	0.152707	0	0.19487	0.0972995	0.0505233	0.083074	0	1.04335	0.900552	0	0	1.98032	2.79429	0.754851	1.29629	0.157076	0.140186	0	0	0.0811908	0.0827206
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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