|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065528 ID=TCONS_00065528|Name=TCONS_00065528|organism=Clytia hemisphaerica|type=transcript|length=1770bp
atcaatcaGTACTTCatttgcaaccaatcagctgttgggttcgtggaaga
cattgtaatggtgcatatcatgcaTAGCAATACACTTATCAAACTCGCAA
CGTCACTGAGGGAATTGTGTTCAAGTTTAGAGATGAATGCTATCAAATAT
CTGTATCCGTGACAGCGTCAAAACAACGGGTTTTGGACGTCCTCAAACAA
AGGATAACTCGAACCTTTTTATTTATGAAGTCTtaccagtagcgtggtgg
gtcgaccaaaattcgggcaaactggggcgGAAACTGGCACTAGTGTCTTC
CAATCTTTTCAACCAGCAACAACAAATTTGTAACCATTACCAATTCTGGA
CCAAAAGCCAACGAACTCTTTGTATGAAATTTACAGAGCTTATCCCAAAA
GTCGCGGAAGGCGCTGAAATGGCTTATGATGAATGCAGACACCAATTTCG
CTGGCGTCGTTGGAACTGTGCAGCTAAGAAGCCAGTATTGACGAACAATG
TATGGACATACGAAACGAACGAATACCCTTCCCTGTTCGGAGAGGATTTT
GAACCAGGTGGAATCGAGGCTTCATTTGTCAACGCGATTTTCTCATCTGG
AGTTGCTTACTCAATCACAAAAGCATGTTCCTCAAACAAATTGGAAGGTT
GTTCATGCGAGCGCAATAAGGACGGAACAAttaccaaaacaacaacaaca
aaaacaacaacagcgCATCACCTTAGTAACGGTTTCCAATGGCATCAATG
TAATGATAATGTAATGTTTGGCTTGTCATTTGCAAAGAAGTTTATTGATA
GTGTGGAGTTAAATTGGAACCCAGATCGCATGTTCACGACGCATGCGCAG
GTTATGATGAACCTACATAATAATAAAGTTGGAAGAATGctCTTGAAGGA
GAATTTACAGCAAAATTGTGTCTGTCATGGAGTTTCTGGCACGTGCAGCA
CTCAAGTTTGTTCCAAACGTCTCGGACCTTATAGAGACATCGGTGGTCTA
TTACGAAAGAGGACTGAAAAAGCAATCAAAGTGACtttgaaatatataaa
tacACATCGCATATTGATGCCAGCTGATAATCAACTGGCTCCAGTGACCG
ACACTGATCTTATTTATTTGAAATCATCACCATCATATTGTAATAAGACT
ACTGGAAGGCGGTGTAAATTGAACAGTAAAAAGAAGGCGAAAAAGAAGCC
CCGTGGAGGTTGTGATATGATGTGTTGTGGTGCAGGCTATAGGACTAAAT
TACGAACTGTGACGAAGAACTGTAAATGTCAATTCATTTGGTGTTGTAAA
GTCACATGCGAGAAATGTTATCATCAACAGAAAGTTCATAGTTGTAAATA
AATAACAGACGCAGGAGCTTTAGCGAAGGAAATTGGAGGGAAATGCCAAG
GAGGTTCAGCTCGCTTTTTTTGATTTGTAGCCTTCATTTGATTTCAAAAG
CACGATTGAAAGACGAAGTCAATATTTcagcaaaaaagaaatttgaatat
tgaaaaGATGTTCATGGTTGttaaaattgaaacatgttTTTACTTTTACC
ttTACGAAAAGAGACATGACATTAGTCCCCCTTTAATCCTTTCAAAAACG
CAATGTATAACGGGAGGACATCgtgtaaatatgattttttagagattttg
tagttttataatttatagactttattttttatgtacaaaaattgacGATT
TTAAAAATAAGCAAATTTACGACAAAAATTGGTAGTAACTATTTATCATC
gatagatttttcaaaaaaag Run BLAST on NCBI transcript from alignment at scaffold_44:359107..362944- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065528 ID=TCONS_00065528|Name=TCONS_00065528|organism=Clytia hemisphaerica|type=transcript|length=3838bp|location=Sequence derived from alignment at scaffold_44:359107..362944- (Clytia hemisphaerica)
ATCAATCAGTACTTCATTTGCAACCAATCAGCTGTTGGGTTCGTGGAAGA
CATTGTAATGGTGCATATCATGCATAGCAATACACTTATCAAACTCGCAA
CGTCACTGAGGGAATTGTGTTCAAGTTTAGAGATGAATGCTATCAAATAT
CTGTATCCGTGACAGCGTCAAAACAACGGGTTTTGGACGTCCTCAAACAA
AGGATAACTCGAACCTTTTTATTTATGAAGTCTTACCAGTAGCGTGGTGG
GTCGACCAAAATTCGGGCAAACTGGGGCGGTAATTTGAGAAAATTTTGAT
TTTAGCGCCTCCTATGAAAACTAAATATCGTTTTGAAATAACGCGAGCGA
AGCGAATACGAAAATTTTAGGGTTTTTTTTATCTCTTTTTGGCCGAAAAC
TGCCATACCAAAAGTGTAAGAGAGCAAAGGGGCACCGAAATTAATAATCA
GAGGCGTCTTTTTGCGTCCTTTGTATTCCGGCGCCCCTTTGAAAAACCTC
CCCTGGGAGAGGGGTGGGCATTTTCCCCCATCACATTTTTATTAAGTACC
AGAGTGTATCTCACGCATAACGTAGCGCAGCGTAATGGATTTTGTAATTT
TCGTAAATGTCGGGTCTGTTTACAGACAACATTCTGTTAAAAAGTTAACG
CACAAAATTGAGTGTTGATTCTTTCTCTTTAGGAAACTGGCACTAGTGTC
TTCCAATCTTTTCAACCAGCAACAACAAATTTGTAACCATTACCAATTCT
GGACCAAAAGCCAACGAACTCTTTGTATGAAATTTACAGAGCTTATCCCA
AAAGTCGCGGAAGGCGCTGAAATGGCTTATGATGAATGCAGGTAAGATGT
TGTTATTTATTGATAATGAAANGCGCTGAAATGGCTTATGATGAATGCAG
GTAAGATGTTGTTATTTATTGATAATGAAATGGTTTATATTTATCATATT
TAACGCAATAAAATCTCTACCCGAGATACTGTGTGCAATATTATTGGTTT
AGCGTCTTCTAACCCCTCAAAGCCAACAAAGGCNATGGTTTATATTTATC
ATATTTAACGCAATAAAATCTCTACCCGAGATACTGTGTGCAATATTATT
GGTTTAGCGTCTTCTAACCCCTCAAAACCAACAAAGGACTAATTTTCAAA
CTTCTGCTACTGTAGCTTTACGAGTACAGACAATCTTTCCGTGAAGTAAG
AAATCTTATAACAATCGTATACTTTTTGAAGAAGTGGTTTTGTTCCAACA
TTAGCGAGGTTGATCTAGCACAAAACTGTTATTTATGGTGTCGGTTCCAT
TGGTTCAGTAATGCAACTCTCCCGCTGATTTTTCTTACGTATACCGGCCG
CCAAAACGGCTGTAAACTCCGCGCGTATAATATTTTCCCGCTTTTACTAT
CACTGTAACGGACGGTAACACTGTCTACGTTTTCTGAGGCCCGATTTACA
GGCTATTTAAAAGACCTGAAATTTAGACCTTTTGGGATTTTTTGAAGGCA
TGTCGACTTGAAACGTGTTTGATAAAGTTAGAGAAAGAAATTAGAAACTA
AGAAAGCGCGTTTGGGAATAAATATAACACGTAAACAAAGATTGAAATGG
GGAAAATCAGACCTCATAAGCTTGATATTAAAGATCAGTTTGTACACCAA
GCATAAACGTTTGATCCTACCTACATTTTCAGACACCAATTTCGCTGGCG
TCGTTGGAACTGTGCAGCTAAGAAGCCAGTATTGACGAACAATGTATGGA
CATACGAAACGAACGAATACCCTTCCCTGTTCGGAGAGGATTTTGAACCA
GGTAAGGTTTATCCTCTAACCAAATTTGAGGCAAAATCGACCTTATGGTA
TATTTTTTTGGAAATTCTTTGTCCTTCATAGAGCAGAAAGTGGCAGGATA
TTTGCCCCAAAGGTTTTGCAATACATTATTTTTTGGTCTTTACACACCTT
AAAGTACACTGTCCTTAACACAGTCCACTATTGGAAACCCTGAAAATGTG
TACTATTGACGACCAAGGGGCAGGCGGGTTTAAAAGGATATTGCAAAAAT
ATTTTAAAAACTGTCATACCTTGACCCGTTTTCTATCCTTCATTCTTGAA
CAGGTGGAATCGAGGCTTCATTTGTCAACGCGATTTTCTCATCTGGAGTT
GCTTACTCAATCACAAAAGCATGTTCCTCAAACAAATTGGAAGGTTGTTC
ATGCGAGCGCAATAAGGACGGAACAATTACCAAAACAACAACAACAAAAA
CAACAACAGCGCATCACCTTAGTAACGGTTTCCAATGGCATCAATGTAAT
GATAATGTAATGTTTGGCTTGTCATTTGCAAAGAAGTTTATTGATAGTGT
GGAGTTAAATTGGAACCCAGATCGCATGTTCACGACGCATGCGCAGGTTA
TGATGAACCTACATAATAATAAAGTTGGAAGAATGGTTAGTATAACACAC
GCGTTTTTTATGAGAACTAGTAAATTTAGGCTTGGCTGTTCTTATTTTTT
CGATTTTCAGACTGTTCTTAAAATGTTCTTAATATCCTTACTTTATTCAC
TTACTGACTTAAAAAGCGGCATTTTCATTTTTGAAATTCTGAAGCTTTAA
TCTGGTCTTCTTATGAAAAAGCGGATGTGGGTGTTATGGAATTTCATTTT
ATTTTAAAGATCCTGCTCCCCCCCTGGGGACGGAAATCTTATATAGGGTT
TTAAGATTTATTTCTAGGAAAGCTTCATTGTTCTTTAACTCAGGGAAAGA
ACCCCACACAACTATTAATAAGTATATGTTTTTCAATTTCAGCTCTTGAA
GGAGAATTTACAGCAAAATTGTGTCTGTCATGGAGTTTCTGGCACGTGCA
GCACTCAAGTTTGTTCCAAACGTCTCGGACCTTATAGAGACATCGGTGGT
CTATTACGAAAGAGGACTGAAAAAGCAATCAAAGTGACTTTGAAATATAT
AAATACACATCGCATATTGATGCCAGCTGATAATCAACTGGCTCCAGTGA
CCGACACTGATCTTATTTATTTGAAATCATCACCATCATATTGTAATAAG
ACTACTGGAAGGCGGTGTAAATTGAACAGTAAAAAGAAGGCGAAAAAGAA
GCCCCGTGGAGGTTGTGATATGATGTGTTGTGGTGCAGGCTATAGGACTA
AATTACGAACTGTGACGAAGAACTGTAAATGTCAATTCATTTGGTGTTGT
AAAGTCACATGCGAGAAATGTTATCATCAACAGAAAGTTCATAGTTGTAA
ATAAATAACAGACGCAGGAGCTTTAGCGAAGGAAATTGGAGGGAAATGCC
AAGGAGGTTCAGCTCGCTTTTTTTGATTTGTAGCCTTCATTTGATTTCAA
AAGCACGATTGAAAGACGAAGTCAATATTTCAGCAAAAAAGAAATTTGAA
TATTGAAAAGATGTTCATGGTTGTTAAAATTGAAACATGTTTTTACTTTT
ACCATTTAGACCCTAATGCTGATGGCGTAGACAATCGGAGAAAGTGAGTA
GGAAATTTCGGATATGACAAATCAAAGATCATGTGTATTCTGTACGGTTG
AATAGATAATCTTTTAAATTTATCTGGAAAGCCAATAAATATTTGTAATA
GACAAAATATTTGGAAACTTTACGAAAAGAGACATGACATTAGTCCCCCT
TTAATCCTTTCAAAAACGCAATGTATAACGGGAGGACATCGTGTAAATAT
GATTTTTTAGAGATTTTGTAGTTTTATAATTTATAGACTTTATTTTTTAT
GTACAAAAATTGACGATTTTAAAAATAAGCAAATTTACGACAAAAATTGG
TAGTAACTATTTATCATCGATAGATTTTTCAAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065528-exon-scaffold_44-1575043694:362666..362944 | TCONS_00065528-exon-scaffold_44-1575043694:362666..362944 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1575043694:362104..362262 | TCONS_00065528-exon-scaffold_44-1575043694:362104..362262 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1575043694:361144..361262 | TCONS_00065528-exon-scaffold_44-1575043694:361144..361262 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1575043694:360510..360841 | TCONS_00065528-exon-scaffold_44-1575043694:360510..360841 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1575043694:359492..360152 | TCONS_00065528-exon-scaffold_44-1575043694:359492..360152 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1575043694:359107..359326 | TCONS_00065528-exon-scaffold_44-1575043694:359107..359326 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1510915933:362666..362944 | TCONS_00065528-exon-scaffold_44-1510915933:362666..362944 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1510915933:362104..362262 | TCONS_00065528-exon-scaffold_44-1510915933:362104..362262 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1510915933:361144..361262 | TCONS_00065528-exon-scaffold_44-1510915933:361144..361262 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1510915933:360510..360841 | TCONS_00065528-exon-scaffold_44-1510915933:360510..360841 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1510915933:359492..360152 | TCONS_00065528-exon-scaffold_44-1510915933:359492..360152 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1510915933:359107..359326 | TCONS_00065528-exon-scaffold_44-1510915933:359107..359326 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1491911889:362666..362944 | TCONS_00065528-exon-scaffold_44-1491911889:362666..362944 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1491911889:362104..362262 | TCONS_00065528-exon-scaffold_44-1491911889:362104..362262 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1491911889:361144..361262 | TCONS_00065528-exon-scaffold_44-1491911889:361144..361262 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1491911889:360510..360841 | TCONS_00065528-exon-scaffold_44-1491911889:360510..360841 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1491911889:359492..360152 | TCONS_00065528-exon-scaffold_44-1491911889:359492..360152 | Clytia hemisphaerica | exon |
| TCONS_00065528-exon-scaffold_44-1491911889:359107..359326 | TCONS_00065528-exon-scaffold_44-1491911889:359107..359326 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:359107..362944 - |
Blast
BLAST of TCONS_00065528 vs. Swiss-Prot (Human)
Match: WNT4 (Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4) HSP 1 Score: 228.024 bits (580), Expect = 3.127e-68 Identity = 120/363 (33.06%), Postives = 197/363 (54.27%), Query Frame = 2
Query: 284 LALVSSNLFNQQQQICNHYQFWTKSQRTLCMKFTELIPKVAEGAEMAYDECRHQFRWRRWNCAAKKPVLTNNVWTYETNEYPSLFGEDFEPGGIEASFVNAIFSSGVAYSITKACSSNKLEGCSCERNKDGXXXXXXXXXXXXAHHLSNGFQWHQCNDNVMFGLSFAKKFIDSVELNWNPDRMFTTHAQVMMNLHNNKVGRMLLKENLQQNCVCHGVSGTCSTQVCSKRLGPYRDIGGLLRKRTEKAIKVTLKYINTHRILMPADNQLAPVTDTDLIYLKSSPSYCNK--------TTGRRCKLNSXXXXXXXPRGGCDMMCCGAGYRTKLRTVTKNCKCQFIWCCKVTCEKCYHQQKVHSCK 1348
LA +SS +++ C + + Q +C + E++ V GA++A +EC++QFR RRWNC+ T + +FG+ G EA+FV AI S+GVA+++T+ACSS +LE C C+R G GFQW C+DN+ +G++F++ F+D E + + ++ +MNLHNN+ GR + +++ C CHGVSG+C + C + + P+R +G L+++ + A +V + + + R L+P + Q P TD DL+YL+ SP +C + T GR C SK GC+++CCG G+ T + + C C+F WCC V C +C ++H+C+
Sbjct: 28 LAKLSSVGSISEEETCEKLKGLIQRQVQMCKRNLEVMDSVRRGAQLAIEECQYQFRNRRWNCS--------------TLDSLPVFGKVVTQGTREAAFVYAISSAGVAFAVTRACSSGELEKCGCDRTVHGVS--------------PQGFQWSGCSDNIAYGVAFSQSFVDVRERSKG-----ASSSRALMNLHNNEAGRKAILTHMRVECKCHGVSGSCEVKTCWRAVPPFRQVGHALKEKFDGATEVEPRRVGSSRALVPRNAQFKPHTDEDLVYLEPSPDFCEQDMRSGVLGTRGRTCNKTSKAID------GCELLCCGRGFHTAQVELAERCSCKFHWCCFVKCRQCQRLVELHTCR 351
The following BLAST results are available for this feature:
|
