TCONS_00065528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065528
Unique NameTCONS_00065528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065528 ID=TCONS_00065528|Name=TCONS_00065528|organism=Clytia hemisphaerica|type=transcript|length=1770bp
atcaatcaGTACTTCatttgcaaccaatcagctgttgggttcgtggaaga
cattgtaatggtgcatatcatgcaTAGCAATACACTTATCAAACTCGCAA
CGTCACTGAGGGAATTGTGTTCAAGTTTAGAGATGAATGCTATCAAATAT
CTGTATCCGTGACAGCGTCAAAACAACGGGTTTTGGACGTCCTCAAACAA
AGGATAACTCGAACCTTTTTATTTATGAAGTCTtaccagtagcgtggtgg
gtcgaccaaaattcgggcaaactggggcgGAAACTGGCACTAGTGTCTTC
CAATCTTTTCAACCAGCAACAACAAATTTGTAACCATTACCAATTCTGGA
CCAAAAGCCAACGAACTCTTTGTATGAAATTTACAGAGCTTATCCCAAAA
GTCGCGGAAGGCGCTGAAATGGCTTATGATGAATGCAGACACCAATTTCG
CTGGCGTCGTTGGAACTGTGCAGCTAAGAAGCCAGTATTGACGAACAATG
TATGGACATACGAAACGAACGAATACCCTTCCCTGTTCGGAGAGGATTTT
GAACCAGGTGGAATCGAGGCTTCATTTGTCAACGCGATTTTCTCATCTGG
AGTTGCTTACTCAATCACAAAAGCATGTTCCTCAAACAAATTGGAAGGTT
GTTCATGCGAGCGCAATAAGGACGGAACAAttaccaaaacaacaacaaca
aaaacaacaacagcgCATCACCTTAGTAACGGTTTCCAATGGCATCAATG
TAATGATAATGTAATGTTTGGCTTGTCATTTGCAAAGAAGTTTATTGATA
GTGTGGAGTTAAATTGGAACCCAGATCGCATGTTCACGACGCATGCGCAG
GTTATGATGAACCTACATAATAATAAAGTTGGAAGAATGctCTTGAAGGA
GAATTTACAGCAAAATTGTGTCTGTCATGGAGTTTCTGGCACGTGCAGCA
CTCAAGTTTGTTCCAAACGTCTCGGACCTTATAGAGACATCGGTGGTCTA
TTACGAAAGAGGACTGAAAAAGCAATCAAAGTGACtttgaaatatataaa
tacACATCGCATATTGATGCCAGCTGATAATCAACTGGCTCCAGTGACCG
ACACTGATCTTATTTATTTGAAATCATCACCATCATATTGTAATAAGACT
ACTGGAAGGCGGTGTAAATTGAACAGTAAAAAGAAGGCGAAAAAGAAGCC
CCGTGGAGGTTGTGATATGATGTGTTGTGGTGCAGGCTATAGGACTAAAT
TACGAACTGTGACGAAGAACTGTAAATGTCAATTCATTTGGTGTTGTAAA
GTCACATGCGAGAAATGTTATCATCAACAGAAAGTTCATAGTTGTAAATA
AATAACAGACGCAGGAGCTTTAGCGAAGGAAATTGGAGGGAAATGCCAAG
GAGGTTCAGCTCGCTTTTTTTGATTTGTAGCCTTCATTTGATTTCAAAAG
CACGATTGAAAGACGAAGTCAATATTTcagcaaaaaagaaatttgaatat
tgaaaaGATGTTCATGGTTGttaaaattgaaacatgttTTTACTTTTACC
ttTACGAAAAGAGACATGACATTAGTCCCCCTTTAATCCTTTCAAAAACG
CAATGTATAACGGGAGGACATCgtgtaaatatgattttttagagattttg
tagttttataatttatagactttattttttatgtacaaaaattgacGATT
TTAAAAATAAGCAAATTTACGACAAAAATTGGTAGTAACTATTTATCATC
gatagatttttcaaaaaaag
Run BLAST on NCBI

transcript from alignment at scaffold_44:359107..362944-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065528 ID=TCONS_00065528|Name=TCONS_00065528|organism=Clytia hemisphaerica|type=transcript|length=3838bp|location=Sequence derived from alignment at scaffold_44:359107..362944- (Clytia hemisphaerica)
ATCAATCAGTACTTCATTTGCAACCAATCAGCTGTTGGGTTCGTGGAAGA
CATTGTAATGGTGCATATCATGCATAGCAATACACTTATCAAACTCGCAA
CGTCACTGAGGGAATTGTGTTCAAGTTTAGAGATGAATGCTATCAAATAT
CTGTATCCGTGACAGCGTCAAAACAACGGGTTTTGGACGTCCTCAAACAA
AGGATAACTCGAACCTTTTTATTTATGAAGTCTTACCAGTAGCGTGGTGG
GTCGACCAAAATTCGGGCAAACTGGGGCGGTAATTTGAGAAAATTTTGAT
TTTAGCGCCTCCTATGAAAACTAAATATCGTTTTGAAATAACGCGAGCGA
AGCGAATACGAAAATTTTAGGGTTTTTTTTATCTCTTTTTGGCCGAAAAC
TGCCATACCAAAAGTGTAAGAGAGCAAAGGGGCACCGAAATTAATAATCA
GAGGCGTCTTTTTGCGTCCTTTGTATTCCGGCGCCCCTTTGAAAAACCTC
CCCTGGGAGAGGGGTGGGCATTTTCCCCCATCACATTTTTATTAAGTACC
AGAGTGTATCTCACGCATAACGTAGCGCAGCGTAATGGATTTTGTAATTT
TCGTAAATGTCGGGTCTGTTTACAGACAACATTCTGTTAAAAAGTTAACG
CACAAAATTGAGTGTTGATTCTTTCTCTTTAGGAAACTGGCACTAGTGTC
TTCCAATCTTTTCAACCAGCAACAACAAATTTGTAACCATTACCAATTCT
GGACCAAAAGCCAACGAACTCTTTGTATGAAATTTACAGAGCTTATCCCA
AAAGTCGCGGAAGGCGCTGAAATGGCTTATGATGAATGCAGGTAAGATGT
TGTTATTTATTGATAATGAAANGCGCTGAAATGGCTTATGATGAATGCAG
GTAAGATGTTGTTATTTATTGATAATGAAATGGTTTATATTTATCATATT
TAACGCAATAAAATCTCTACCCGAGATACTGTGTGCAATATTATTGGTTT
AGCGTCTTCTAACCCCTCAAAGCCAACAAAGGCNATGGTTTATATTTATC
ATATTTAACGCAATAAAATCTCTACCCGAGATACTGTGTGCAATATTATT
GGTTTAGCGTCTTCTAACCCCTCAAAACCAACAAAGGACTAATTTTCAAA
CTTCTGCTACTGTAGCTTTACGAGTACAGACAATCTTTCCGTGAAGTAAG
AAATCTTATAACAATCGTATACTTTTTGAAGAAGTGGTTTTGTTCCAACA
TTAGCGAGGTTGATCTAGCACAAAACTGTTATTTATGGTGTCGGTTCCAT
TGGTTCAGTAATGCAACTCTCCCGCTGATTTTTCTTACGTATACCGGCCG
CCAAAACGGCTGTAAACTCCGCGCGTATAATATTTTCCCGCTTTTACTAT
CACTGTAACGGACGGTAACACTGTCTACGTTTTCTGAGGCCCGATTTACA
GGCTATTTAAAAGACCTGAAATTTAGACCTTTTGGGATTTTTTGAAGGCA
TGTCGACTTGAAACGTGTTTGATAAAGTTAGAGAAAGAAATTAGAAACTA
AGAAAGCGCGTTTGGGAATAAATATAACACGTAAACAAAGATTGAAATGG
GGAAAATCAGACCTCATAAGCTTGATATTAAAGATCAGTTTGTACACCAA
GCATAAACGTTTGATCCTACCTACATTTTCAGACACCAATTTCGCTGGCG
TCGTTGGAACTGTGCAGCTAAGAAGCCAGTATTGACGAACAATGTATGGA
CATACGAAACGAACGAATACCCTTCCCTGTTCGGAGAGGATTTTGAACCA
GGTAAGGTTTATCCTCTAACCAAATTTGAGGCAAAATCGACCTTATGGTA
TATTTTTTTGGAAATTCTTTGTCCTTCATAGAGCAGAAAGTGGCAGGATA
TTTGCCCCAAAGGTTTTGCAATACATTATTTTTTGGTCTTTACACACCTT
AAAGTACACTGTCCTTAACACAGTCCACTATTGGAAACCCTGAAAATGTG
TACTATTGACGACCAAGGGGCAGGCGGGTTTAAAAGGATATTGCAAAAAT
ATTTTAAAAACTGTCATACCTTGACCCGTTTTCTATCCTTCATTCTTGAA
CAGGTGGAATCGAGGCTTCATTTGTCAACGCGATTTTCTCATCTGGAGTT
GCTTACTCAATCACAAAAGCATGTTCCTCAAACAAATTGGAAGGTTGTTC
ATGCGAGCGCAATAAGGACGGAACAATTACCAAAACAACAACAACAAAAA
CAACAACAGCGCATCACCTTAGTAACGGTTTCCAATGGCATCAATGTAAT
GATAATGTAATGTTTGGCTTGTCATTTGCAAAGAAGTTTATTGATAGTGT
GGAGTTAAATTGGAACCCAGATCGCATGTTCACGACGCATGCGCAGGTTA
TGATGAACCTACATAATAATAAAGTTGGAAGAATGGTTAGTATAACACAC
GCGTTTTTTATGAGAACTAGTAAATTTAGGCTTGGCTGTTCTTATTTTTT
CGATTTTCAGACTGTTCTTAAAATGTTCTTAATATCCTTACTTTATTCAC
TTACTGACTTAAAAAGCGGCATTTTCATTTTTGAAATTCTGAAGCTTTAA
TCTGGTCTTCTTATGAAAAAGCGGATGTGGGTGTTATGGAATTTCATTTT
ATTTTAAAGATCCTGCTCCCCCCCTGGGGACGGAAATCTTATATAGGGTT
TTAAGATTTATTTCTAGGAAAGCTTCATTGTTCTTTAACTCAGGGAAAGA
ACCCCACACAACTATTAATAAGTATATGTTTTTCAATTTCAGCTCTTGAA
GGAGAATTTACAGCAAAATTGTGTCTGTCATGGAGTTTCTGGCACGTGCA
GCACTCAAGTTTGTTCCAAACGTCTCGGACCTTATAGAGACATCGGTGGT
CTATTACGAAAGAGGACTGAAAAAGCAATCAAAGTGACTTTGAAATATAT
AAATACACATCGCATATTGATGCCAGCTGATAATCAACTGGCTCCAGTGA
CCGACACTGATCTTATTTATTTGAAATCATCACCATCATATTGTAATAAG
ACTACTGGAAGGCGGTGTAAATTGAACAGTAAAAAGAAGGCGAAAAAGAA
GCCCCGTGGAGGTTGTGATATGATGTGTTGTGGTGCAGGCTATAGGACTA
AATTACGAACTGTGACGAAGAACTGTAAATGTCAATTCATTTGGTGTTGT
AAAGTCACATGCGAGAAATGTTATCATCAACAGAAAGTTCATAGTTGTAA
ATAAATAACAGACGCAGGAGCTTTAGCGAAGGAAATTGGAGGGAAATGCC
AAGGAGGTTCAGCTCGCTTTTTTTGATTTGTAGCCTTCATTTGATTTCAA
AAGCACGATTGAAAGACGAAGTCAATATTTCAGCAAAAAAGAAATTTGAA
TATTGAAAAGATGTTCATGGTTGTTAAAATTGAAACATGTTTTTACTTTT
ACCATTTAGACCCTAATGCTGATGGCGTAGACAATCGGAGAAAGTGAGTA
GGAAATTTCGGATATGACAAATCAAAGATCATGTGTATTCTGTACGGTTG
AATAGATAATCTTTTAAATTTATCTGGAAAGCCAATAAATATTTGTAATA
GACAAAATATTTGGAAACTTTACGAAAAGAGACATGACATTAGTCCCCCT
TTAATCCTTTCAAAAACGCAATGTATAACGGGAGGACATCGTGTAAATAT
GATTTTTTAGAGATTTTGTAGTTTTATAATTTATAGACTTTATTTTTTAT
GTACAAAAATTGACGATTTTAAAAATAAGCAAATTTACGACAAAAATTGG
TAGTAACTATTTATCATCGATAGATTTTTCAAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041060XLOC_041060Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065528-exon-scaffold_44-1575043694:362666..362944TCONS_00065528-exon-scaffold_44-1575043694:362666..362944Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1575043694:362104..362262TCONS_00065528-exon-scaffold_44-1575043694:362104..362262Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1575043694:361144..361262TCONS_00065528-exon-scaffold_44-1575043694:361144..361262Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1575043694:360510..360841TCONS_00065528-exon-scaffold_44-1575043694:360510..360841Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1575043694:359492..360152TCONS_00065528-exon-scaffold_44-1575043694:359492..360152Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1575043694:359107..359326TCONS_00065528-exon-scaffold_44-1575043694:359107..359326Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1510915933:362666..362944TCONS_00065528-exon-scaffold_44-1510915933:362666..362944Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1510915933:362104..362262TCONS_00065528-exon-scaffold_44-1510915933:362104..362262Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1510915933:361144..361262TCONS_00065528-exon-scaffold_44-1510915933:361144..361262Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1510915933:360510..360841TCONS_00065528-exon-scaffold_44-1510915933:360510..360841Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1510915933:359492..360152TCONS_00065528-exon-scaffold_44-1510915933:359492..360152Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1510915933:359107..359326TCONS_00065528-exon-scaffold_44-1510915933:359107..359326Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1491911889:362666..362944TCONS_00065528-exon-scaffold_44-1491911889:362666..362944Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1491911889:362104..362262TCONS_00065528-exon-scaffold_44-1491911889:362104..362262Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1491911889:361144..361262TCONS_00065528-exon-scaffold_44-1491911889:361144..361262Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1491911889:360510..360841TCONS_00065528-exon-scaffold_44-1491911889:360510..360841Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1491911889:359492..360152TCONS_00065528-exon-scaffold_44-1491911889:359492..360152Clytia hemisphaericaexon
TCONS_00065528-exon-scaffold_44-1491911889:359107..359326TCONS_00065528-exon-scaffold_44-1491911889:359107..359326Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:359107..362944 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0864219	0.0442571	0.0514201	0.102655	0.349301	0.159951	5.5915	7.41069	2.63516	1.36744	2.58114	1.79921	1.99778	1.84647	0.857389	1.21841	1.12716	1.53505	1.02528	1.1693	2.31731	1.91126	2.06608	1.64372	4.4537	3.30878	0.474168	0.878723	0.833293	1.52542
Blast
[Close]
BLAST of TCONS_00065528 vs. Swiss-Prot (Human)
Match: WNT4 (Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4)

HSP 1 Score: 228.024 bits (580), Expect = 3.127e-68
Identity = 120/363 (33.06%), Postives = 197/363 (54.27%), Query Frame = 2 
Query:  284 LALVSSNLFNQQQQICNHYQFWTKSQRTLCMKFTELIPKVAEGAEMAYDECRHQFRWRRWNCAAKKPVLTNNVWTYETNEYPSLFGEDFEPGGIEASFVNAIFSSGVAYSITKACSSNKLEGCSCERNKDGXXXXXXXXXXXXAHHLSNGFQWHQCNDNVMFGLSFAKKFIDSVELNWNPDRMFTTHAQVMMNLHNNKVGRMLLKENLQQNCVCHGVSGTCSTQVCSKRLGPYRDIGGLLRKRTEKAIKVTLKYINTHRILMPADNQLAPVTDTDLIYLKSSPSYCNK--------TTGRRCKLNSXXXXXXXPRGGCDMMCCGAGYRTKLRTVTKNCKCQFIWCCKVTCEKCYHQQKVHSCK 1348
            LA +SS     +++ C   +   + Q  +C +  E++  V  GA++A +EC++QFR RRWNC+              T +   +FG+    G  EA+FV AI S+GVA+++T+ACSS +LE C C+R   G                  GFQW  C+DN+ +G++F++ F+D  E +        + ++ +MNLHNN+ GR  +  +++  C CHGVSG+C  + C + + P+R +G  L+++ + A +V  + + + R L+P + Q  P TD DL+YL+ SP +C +        T GR C   SK         GC+++CCG G+ T    + + C C+F WCC V C +C    ++H+C+
Sbjct:   28 LAKLSSVGSISEEETCEKLKGLIQRQVQMCKRNLEVMDSVRRGAQLAIEECQYQFRNRRWNCS--------------TLDSLPVFGKVVTQGTREAAFVYAISSAGVAFAVTRACSSGELEKCGCDRTVHGVS--------------PQGFQWSGCSDNIAYGVAFSQSFVDVRERSKG-----ASSSRALMNLHNNEAGRKAILTHMRVECKCHGVSGSCEVKTCWRAVPPFRQVGHALKEKFDGATEVEPRRVGSSRALVPRNAQFKPHTDEDLVYLEPSPDFCEQDMRSGVLGTRGRTCNKTSKAID------GCELLCCGRGFHTAQVELAERCSCKFHWCCFVKCRQCQRLVELHTCR 351
The following BLAST results are available for this feature:
BLAST of TCONS_00065528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WNT43.127e-6833.06Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4[more]
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