TCONS_00065518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065518
Unique NameTCONS_00065518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065518 ID=TCONS_00065518|Name=TCONS_00065518|organism=Clytia hemisphaerica|type=transcript|length=718bp
GCCAAAGAAAGAGAACCCAACAAGTAATGCAGAAAGAATAAGAAAGTGGA
GATCAAAAGAAGGTAATCGGGAAGCAGAAAATTTGAAACAGCGCGAGGCA
AGAAAGGCAATTGCAGGAAAGAGAAGTGACGAAGAACGGATAAGGAAAAG
GGAACAAAGATAGAGTACGGAAAGCTAAATGGAGACTAGATATTTCTAGA
CAGAAGAGATATGGGCTGAAGGTTAAAGACAGGCATAGAAAAGCAAACAG
CAAAGAAGGAGCCAGCATTGAAACTTCGACAGAGCGTGTCAGAGAGCATA
GAGCtctgaaagtgaaaatgaaCTTCGGAAAGAACAGAATTGTGAAGGCT
AAAAGGTCAATAATGAGTTCGTTATCTACTCTCTCTCCTCAAAGTAAAGT
TAGTGCAATAGTCGATTGCTCAAATACACTAACTCCAGGCTCAAAGATGG
CAGTTGCCAATCAAGTGGACACTGAAAAAACTCTTTTTAATTCCCTTTCA
AAAAACCGTGACCATGTTTCCAACGCAGCTCGACGAATGTTAATGAGTGA
TAATGAACAAAAATCTGGCTCAGTAAGATCAGCGAAAAAGTCGAATCGTA
GATTGAGTTGGAGATCACTCAAAAGTGCATCCTCAATGGACATTAATGAC
ATCACAAAAcattacaaaacaaaaaaagtttacaaaaaagaCTCCAAAAA
ACACAAGCTTGttgttga
Run BLAST on NCBI

protein sequence of TCONS_00065518-protein

>TCONS_00065518-protein ID=TCONS_00065518-protein|Name=TCONS_00065518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MNFGKNRIVKAKRSIMSSLSTLSPQSKVSAIVDCSNTLTPGSKMAVANQV
DTEKTLFNSLSKNRDHVSNAARRMLMSDNEQKSGSVRSAKKSNRRLSWRS
LKSASSMDINDITKHYKTKKVYKKDSKKHKLVV
Run BLAST on NCBI

transcript from alignment at scaffold_44:291119..292034-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065518 ID=TCONS_00065518|Name=TCONS_00065518|organism=Clytia hemisphaerica|type=transcript|length=916bp|location=Sequence derived from alignment at scaffold_44:291119..292034- (Clytia hemisphaerica)
GCCAAAGAAAGAGAACCCAACAAGTAATGCAGAAAGAATAAGAAAGTGGA
GATCAAAAGAAGGTAATATGAAAGGAATTTTTGTAATAATAGAAAAATTG
ACTAACTGGCCTGCAATAATTTCAACTCTTTAAGCAAATTTCCATTTTAT
TCAGTTAACAATTTTTTAAAGTCTAAACTAAACACATTTCTATTTAGAAA
ACTCTTTTTTTTATATTAGATTAAATATAACTGATTTCCTAATTTTCTCT
AATTTTGAAGGTAATCGGGAAGCAGAAAATTTGAAACAGCGCGAGGCAAG
AAAGGCAATTGCAGGAAAGAGAAGTGACGAAGAACGGATAAGGAAAAGGG
AACAAAGATAGAGTACGGAAAGCTAAATGGAGACTAGATATTTCTAGACA
GAAGAGATATGGGCTGAAGGTTAAAGACAGGCATAGAAAAGCAAACAGCA
AAGAAGGAGCCAGCATTGAAACTTCGACAGAGCGTGTCAGAGAGCATAGA
GCTCTGAAAGTGAAAATGAACTTCGGAAAGAACAGAATTGTGAAGGCTAA
AAGGTCAATAATGAGTTCGTTATCTACTCTCTCTCCTCAAAGTAAAGTTA
GTGCAATAGTCGATTGCTCAAATACACTAACTCCAGGCTCAAAGATGGCA
GTTGCCAATCAAGTGGACACTGAAAAAACTCTTTTTAATTCCCTTTCAAA
AAACCGTGACCATGTTTCCAACGCAGCTCGACGAATGTTAATGAGTGATA
ATGAACAAAAATCTGGCTCAGTAAGATCAGCGAAAAAGTCGAATCGTAGA
TTGAGTTGGAGATCACTCAAAAGTGCATCCTCAATGGACATTAATGACAT
CACAAAACATTACAAAACAAAAAAAGTTTACAAAAAAGACTCCAAAAAAC
ACAAGCTTGTTGTTGA

Coding sequence (CDS) from alignment at scaffold_44:291119..292034-

>TCONS_00065518 ID=TCONS_00065518|Name=TCONS_00065518|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_44:291119..292034- (Clytia hemisphaerica)
ATGAACTTCGGAAAGAACAGAATTGTGAAGGCTAAAAGGTCAATAATGAG
TTCGTTATCTACTCTCTCTCCTCAAAGTAAAGTTAGTGCAATAGTCGATT
GCTCAAATACACTAACTCCAGGCTCAAAGATGGCAGTTGCCAATCAAGTG
GACACTGAAAAAACTCTTTTTAATTCCCTTTCAAAAAACCGTGACCATGT
TTCCAACGCAGCTCGACGAATGTTAATGAGTGATAATGAACAAAAATCTG
GCTCAGTAAGATCAGCGAAAAAGTCGAATCGTAGATTGAGTTGGAGATCA
CTCAAAAGTGCATCCTCAATGGACATTAATGACATCACAAAACATTACAA
AACAAAAAAAGTTTACAAAAAAGACTCCAAAAAACACAAGCTTGTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041058XLOC_041058Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065518-proteinTCONS_00065518-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065518-exon-scaffold_44-1575043694:291973..292034TCONS_00065518-exon-scaffold_44-1575043694:291973..292034Clytia hemisphaericaexon
TCONS_00065518-exon-scaffold_44-1575043694:291119..291774TCONS_00065518-exon-scaffold_44-1575043694:291119..291774Clytia hemisphaericaexon
TCONS_00065518-exon-scaffold_44-1510915933:291973..292034TCONS_00065518-exon-scaffold_44-1510915933:291973..292034Clytia hemisphaericaexon
TCONS_00065518-exon-scaffold_44-1510915933:291119..291774TCONS_00065518-exon-scaffold_44-1510915933:291119..291774Clytia hemisphaericaexon
TCONS_00065518-exon-scaffold_44-1491911889:291973..292034TCONS_00065518-exon-scaffold_44-1491911889:291973..292034Clytia hemisphaericaexon
TCONS_00065518-exon-scaffold_44-1491911889:291119..291774TCONS_00065518-exon-scaffold_44-1491911889:291119..291774Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:291119..292034 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.278803	0.543755	0.157838	0.15442	0.657969	0.297106	0.0896115	0.503359	0.234942	0.145507	0.494314	0	0.231779	0	0.237471	0.424737	0.261621	0.429045	0.222281	0.155067	0.0673908	0.0986125	0.0799176	0.0726567	0.0748347	0	0.191147	0.101999	0.0773625	0.15764
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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