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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065502 ID=TCONS_00065502|Name=TCONS_00065502|organism=Clytia hemisphaerica|type=transcript|length=1511bp
CGAAAATAATTGggtaaaagagaaacatttcgAGAAAAAGGAGTGAGAAA
TTAAAGTATCAAGAAAGAAAACTAAAATGATTTgaagcaaaaatgaaaat
tcggtGTAGAAGGGAACAGTTTTTTATACTGATAGCCATTCTTCCTTTGG
AAGTGCTTAGTCAGCATTTATTTAATGATCGTTATATCAATgggaaacaa
aacaaaaggctTGTAAGCGACCAATACTTGAAAAATGCCGATGTCAGCGA
ACAGTATTGTATGGCTACATGTTCTTTgatgaaagaaaaatGAAGCAGGA
GACACCCAGGAAAGAACAGTCAAATCAAACAGCTTCGATTTGGAAAATGA
AATTAAACCAGAAAAGAACCAGATTCTACATTTCATCCCGGTCATCAAGA
CAGAATGGAAATTGGAAGTCTACTTTCAAATCAAAGACACAGGTTCACAA
ACTATGGAGATGTTCAGTTTCAGAAATAAAGAAACAACTGGGGCATCTAT
CAGAGCTGTCATCAAAACACAACCTAATCTGAAGCTCACTATTGAAGTTT
ATGGGAAGGTGATTGAGCTACCGATAACGCTAGGCACAGACCGGTGGTAC
AAACTTGATGTCATCCAACACAGATTGATGAGTCATCATTACTCAGGATA
CAAAGTCATGTTTATGATCGATGGATATTTGGAGGTTGATGAAAGATTAC
CAACAGAAAATGTGACCGAATTGAGGGACACTGAAGTATATTCATGCCAC
CATCTCCAGAAATCTTGCTTGAGAGGGCGAATCAAGAAATTCAGATTCAG
ACAAACAGCTAGCAGTGCTCCAATCACAACTAGGACGACATTAGAGACTC
TATCCGAATGGAATTGGCCATGGTGGGTGACATTTCAGGCGAAAATTGAT
AGTTTCCTACCAAGTGGATATTGTGGGTTGATGGGTTTTAAGGGAAATGA
TCATCCTCGCTCACCTTGGTTCGGAATCCATGGTTCAAACAGAAAGCTTG
AACTTACACTTTGGTATATGGATAATGGAGTAGAAGTGAAAGTCCCTCGA
TATTATGGTAGTATCACTCAAGGAGTATGGTATTTCATGAAAGCAAGAAT
CGAAGTTCGGCCTGGTGTTGGTTATTACTTTGTTTTATACATCGATGGGA
ATTTAAAGTACCAGGTACCATTGACGGTGACTCAATTGATAGAGTTAACA
AATGTCAATGTTGTTCCCCTCGGCCCATGGTCTCCATGTTACGGAGCAAG
TGTGATCAATGTAAACTACGGATATCTGAAGACACCGTGATTTGGTTATC
ATTATGAAGAAAATTTATACGATGGCAGATGATCGCAACTAAACGTTACA
AAAACACTcccaaaatggtgaaaataagaacatgttaagaacagttttag
gcttaaaactcaaaaagttaagaacatccaaaggcttaaattttttttaa
tgttctataaaaaaacgtgtggaCCTAAAACGGCCAAAATGACCCACTtg
aaacccggggg Run BLAST on NCBI transcript from alignment at scaffold_44:160552..164517- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065502 ID=TCONS_00065502|Name=TCONS_00065502|organism=Clytia hemisphaerica|type=transcript|length=3966bp|location=Sequence derived from alignment at scaffold_44:160552..164517- (Clytia hemisphaerica)
CGAAAATAATTGGGTAAAAGAGAAACATTTCGAGAAAAAGGAGTGAGAAA
TTAAAGTATCAAGAAAGAAAACTAAAATGATTTGAAGCAAAAATGAAAAT
TCGGTGTAGAAGGGAACAGTTTTTTATACTGATAGCCATTCTTCCTTTGG
AAGTGCTTAGTCAGCATTTATTTAATGATCGTTATATCAATGGGAAACAA
AACAAAAGGCTTGTAAGCGACCAATACTTGAAAAATGCCGATGTCAGCGA
ACAGTATTGTATGGCTACATGTTCTTTGATGAAAGAAAAATGTAAGTCCA
TCAATTACCATGCTGAACGCAAGGAGTGTGTTATGAACAAAGAAGCGGTG
GGTACATCAGAAGACAATCTGATTGATGATAAAGGATGGCGATTCTACCC
TAAAACAGTCAGTATTTCATTTTTGCCTTTTACGAACAGAAATAAACAGA
CTCGTTTTTTCATATGAACATTCAATTTTATAAGAACAATGAGGCTCAAA
ATCGTCGGAAAAATAAACAATTAAAGAACGATGCTGAGCCTGGAGATTTT
AAGCAATTCACAGCAATTCACAGCAACAGAAATCTAGAAAATTATTATCT
CTGACTAATATCCCACGAATTCCCAAAAAAATTTAACTTGCTTAATGGTG
AAATCTAATTTTGCTTCTTTTTCCAATTTTATTAGGCATTTTGCTAATCC
TAACAAGCAAAATAAAAAAATGGACCAAGGCTTTTGAAAAACTTATCTTT
AAAGATTAATTGATAGTCTGGAGACCGTGGTGAAGAATTTTTTCGTGCTA
TCTTCATTCTAGGAAGCAGGAGACACCCAGGAAAGAACAGTCAAATCAAA
CAGCTTCGATTTGGAAAATGGTAAGGAGAAAATATAATACTCCTTTTTTG
AACGAAGAAGGTTCAATACAGAGTTCGATAAATTATTGAAAACCAACGTA
TCAATGAACCAAGTGCAGAGAAAATTTATCTAATTAAATAAAAGCGATTC
TATTATTCAATTTTACGGCTAGAAGGATTGAATTTTCTTAATTTTTCCCA
AAGAAATTCATATCATCTTTTACATCCTAAAGCAAAAGCGCCATCACTTG
GGAAAGGTGAAAAACTCAGCTAAGATAGATTCTGTTTCCTTCCTGATATG
TGTCAAGTGTCTTTTGAACCATCACAGTTCAGTTCCGTTAAGACGTTAAG
ACCTCGCTCCACTGCAAAATTCAACCAAAGTTTCGTTCCCGGTGGGAAAA
ATACCCTACAATTTAAGCCCTACTAGCAAATTGACTTTGCTTTCATCCCC
ATTTTAAATTCAATTGAAGACAAGAAGCCGGAGCGGCGTGAAGGTCCAGC
TGACGTGGCAATAACCGAATGTCGTTCGTACCGGGTTCCTTAAGTGACGC
AATAAAGATTCCTTCCCATCCTCCACTCTGAGCTTCTATTCTTTGACACT
TTCTTTGTATTGCTAAGTTTTGAAAGTTTTTGATGCATTTTCCGAAATTT
CGAAACTTTTGCCGCTGATGGAGTTCGAACCTACTATATACAAAGCACCT
ATGATTAGAACGCCAGCGCTTTAACCACTCGGCCATCGAGTCACAACTGC
ATTATGCATTAAGGAGTTCAAAGTTCCTTATAAACATGGTATTTACTCCA
AACTCTACCCGGGTTAACTCCCATCCCCAACCCTAGCCCTAACCCTACCT
GACCCTACCTGAAACAACCCTTTAATCTAACCGAGAAATTTGACTCTACT
ACCAATTCAATCCAAAACATAGGTCAAACATCGCGTGGGTCGGTGGGGCA
AAAATTCTAGATCGGCGGTTGGTTTAGCCTGGACTTGTTAATTGATTGTG
CGCACAGGCCCCGACAAAGACAAAATCTTTTCGATCAGTTTCTTTTTAAA
GGTCCATTCTGTTGCGCGCTGGACCAAAAATTGCACTCCAAAACCATCCC
AACTGGATTTTTTTACCTGAGAACAATAGAATTTCTATTCCCATTGAGAT
TAAACACCAAAAAAATAGAAATATAAATAGATGGATAGAAATTCGATATT
TCCATCCCCACTTTGGGAAGAAGCTACTTTAGACGTACAAACTTTGGCGA
GCAGAAGCTTTGGCGAGGTCGAAAAATCGCGCAATCTACGACATTTACTT
TCACGAATTCGACAAAAAATAATTTTTTGCGAGCATAAACTTTCGTGAAA
TATTTTAAGTATGAAAATAGTGTTTTGATCGCTCAAATCGAGAATTTTCA
GAGACATTTACTTTCGCGAAAAGGGCTAAAATTTGCGAAAATCGCGAAAG
TTTCTGCTTGCGAAAGTTTGTACGTCCAAAGTACACTGGGCTGTGAGACA
GGGGTGTATGTATCTTTGAACCATCCCTGTGTAACCATCCCACTTGGACG
AATGTTTACTGAGATTTGAAAATGTTCCACCATAGAAATTAAACCAGAAA
AGAACCAGATTCTACATTTCATCCCGGTCATCAAGACAGAATGGAAATTG
GAAGTCTACTTTCAAATCAAAGACACAGGTTCACAAACTATGGAGATGTT
CAGTTTCAGAAATAAAGAAACAACTGGGGCATCTATCAGAGCTGTCATCA
AAACACAACCTAATCTGAAGCTCACTATTGAAGTTTATGGGAAGGTGATT
GAGCTACCGATAACGCTAGGCACAGACCGGTGGTACAAACTTGATGTCAT
CCAACACAGATTGATGAGTCATCATTACTCAGGATACAAAGTCATGTTTA
TGATCGATGGATATTTGGAGGTTGATGAAAGATTACCAACAGAAAATGTG
ACCGAATTGAGGGACACTGAAGTATATTCATGCCACCATCTCCAGAAATC
TTGCTTGAGAGGGCGAATCAAGAAATTCAGATTCAGACAAACAGCTAGCA
GTGGTAAAAGACTTTTTCATTTAAAGCTAATCCCTTTTTCGGGCTAATTC
TGTTAAATTTTCTAAGAAATTTGTCTCTTTTCCCAAAATTTTACAAAAAC
TCACCCTTCAGTATGAGGAAAGCTTTTTTCTATCTTTATGCCTTTTCGAA
CCTTCCTAGGATGTCTGAAATTAAGGTACACATCCCTTTAGAAATTCTAT
GTAATCATTGATTTGGATATACTTCTAGAAATCTAAATGAACAAAATATA
CCCCGTGCACCATATGGTTAGTCGTACGTAATTCTTATTTTTACTCCTCG
ATGTGTAAACCTCTCTTACGGACCAAACCTTTAGAAATAGAAAAATATGT
TTTTATGATCTTTTTTCTGTAGCTCCAATCACAACTAGGACGACATTAGA
GACTCTATCCGAATGGAATTGGCCATGGTGGGTGACATTTCAGGCGAAAA
TTGATAGTTTCCTACCAAGTGGATATTGTGGGTTGATGGGTTTTAAGGGA
AATGATCATCCTCGCTCACCTTGGTTCGGAATCCATGGTTCAAACAGAAA
GCTTGAACTTACACTTTGGTATATGGATAATGGAGTAGAAGTGAAAGTCC
CTCGATATTATGGTAGTATCACTCAAGGAGTATGGTATTTCATGAAAGCA
AGAATCGAAGTTCGGCCTGGTGTTGGTTATTACTTTGTTTTATACATCGA
TGGGAATTTAAAGTACCAGGTACCATTGACGGTGACTCAATTGATAGAGT
TAACAAATGTCAATGTTGTTCCCCTCGGCCCATGGTCTCCATGTTACGGA
GCAAGTGTGATCAATGTAAACTACGGATATCTGAAGACACCGTGATTTGG
TTATCATTATGAAGAAAATTTATACGATGGCAGATGATCGCAACTAAACG
TTACAAAAACACTCCCAAAATGGTGAAAATAAGAACATGTTAAGAACAGT
TTTAGGCTTAAAACTCAAAAAGTTAAGAACATCCAAAGGCTTAAATTTTT
TTTAATGTTCTATAAAAAAACGTGTGGACCTAAAACGGCCAAAATGACCC
ACTTGAAACCCGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065502-exon-scaffold_44-1575043694:164227..164517 | TCONS_00065502-exon-scaffold_44-1575043694:164227..164517 | Clytia hemisphaerica | exon |
| TCONS_00065502-exon-scaffold_44-1575043694:163648..163705 | TCONS_00065502-exon-scaffold_44-1575043694:163648..163705 | Clytia hemisphaerica | exon |
| TCONS_00065502-exon-scaffold_44-1575043694:161615..162082 | TCONS_00065502-exon-scaffold_44-1575043694:161615..162082 | Clytia hemisphaerica | exon |
| TCONS_00065502-exon-scaffold_44-1575043694:160552..161245 | TCONS_00065502-exon-scaffold_44-1575043694:160552..161245 | Clytia hemisphaerica | exon |
| TCONS_00065502-exon-scaffold_44-1510915933:164227..164517 | TCONS_00065502-exon-scaffold_44-1510915933:164227..164517 | Clytia hemisphaerica | exon |
| TCONS_00065502-exon-scaffold_44-1510915933:163648..163705 | TCONS_00065502-exon-scaffold_44-1510915933:163648..163705 | Clytia hemisphaerica | exon |
| TCONS_00065502-exon-scaffold_44-1510915933:161615..162082 | TCONS_00065502-exon-scaffold_44-1510915933:161615..162082 | Clytia hemisphaerica | exon |
| TCONS_00065502-exon-scaffold_44-1510915933:160552..161245 | TCONS_00065502-exon-scaffold_44-1510915933:160552..161245 | Clytia hemisphaerica | exon |
| TCONS_00065502-exon-scaffold_44-1491911889:164227..164517 | TCONS_00065502-exon-scaffold_44-1491911889:164227..164517 | Clytia hemisphaerica | exon |
| TCONS_00065502-exon-scaffold_44-1491911889:163648..163705 | TCONS_00065502-exon-scaffold_44-1491911889:163648..163705 | Clytia hemisphaerica | exon |
| TCONS_00065502-exon-scaffold_44-1491911889:161615..162082 | TCONS_00065502-exon-scaffold_44-1491911889:161615..162082 | Clytia hemisphaerica | exon |
| TCONS_00065502-exon-scaffold_44-1491911889:160552..161245 | TCONS_00065502-exon-scaffold_44-1491911889:160552..161245 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:160552..164517 - |
Blast
The following BLAST results are available for this feature:
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