|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065483 ID=TCONS_00065483|Name=TCONS_00065483|organism=Clytia hemisphaerica|type=transcript|length=6155bpRun BLAST on NCBI transcript from alignment at scaffold_44:124457..146948+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065483 ID=TCONS_00065483|Name=TCONS_00065483|organism=Clytia hemisphaerica|type=transcript|length=22492bp|location=Sequence derived from alignment at scaffold_44:124457..146948+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065483 vs. Swiss-Prot (Human)
Match: NBEL2 (Neurobeachin-like protein 2 OS=Homo sapiens GN=NBEAL2 PE=1 SV=2) HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0 Identity = 409/1064 (38.44%), Postives = 578/1064 (54.32%), Query Frame = 2
Query: 2627 WTGIIGSDIAAWTKRIEAICSLHEIAARHHFILPMLNIERQLYEMCLEASVQSI-EQSTQPYAVDTQNAVQILRLVEEFLISTEISDDETLKWSVKLIGNIFKLLNTLNAWDDSIEGGAEWVEVLQITERILYRSFMIKLDMDILVETNKRLTQLLHKRLVTDEMEATYQLFKLDSVL-RISQAHELQ------------------------LDKIINILLQRFERFTSIFIAQNLLTNLPSLNPA----TFKTNFLAYMETEEYYTFI-RVIRDKALEFEQKPSAAKPSLDNGRLWMDSLSSMSKSVQQRQMKLEDSLENVSKIVYHEFDERRA---AERKSLAESVKIYRQKMAIIKSLWQYQKRFLTSERGAWSSKKLSEPRHFRLSNTENCYRMRLKLTENLNYNPHSDAARQRDVSNAPDNEPQVRKQSNELNLADVTVERADEQVFSDEETLSPNEDEDEEEKQADSSHLYDLETFDQISGSCIHSSDCQLVTLMDVVAGRVELTKTHVCYYDDS-----QESNNSHDFKFALEELREVYNRRYNLRKSAIEFFLLDRSSYFINFK------------------------QPKDKDLFYRKLTGQRPKNLYYSGIQNPSRLLRVSKLTTKWVDREISNFEYLMQLNTISGRTYNDLAQYPVFPWVITDFESDTIDLENPDIYRDLTKPVGXXXXXXXXXXXXRYDSFIDPSGLTQRSHYFTHYSNPGGILHYLVRVEPFTSLHIRLQGGKFDCADRQFYSIATTWKT-VYTGGDVKELIPEFFCFPEFLSNLNHFNLGSRQRTGERVNDVALPPWAKNAYDFIDIHRRALESEYVSENLHSWIDLIFGYKQRGKNAEQALNVFSHYSYEGAVDLDKIEDDILREATEGMINNFGQTPTQLLKKPHPKRKALSEVD--LGRMKVTT-QLETDPNNINFSLIQILHMTSPVVFIAVCKPRPKSILYHAVPDSLITIHSNGLFGIHQWFPYTDTKSNNFSFTMDVLLASPSSYNQRFLPGVRSPMHEFSSKLFAFTSDGHLMLLCGYWDNSIRVVNTDRGK 5617
W G+ GSD AAW +R + L ++ A + P I+R L EM LE+++ I E A TQ A+ +LRL+++FL + + E WS KL + LL+ L AW G A+ E+ QI R++ +++ D + + RL LL + EA Y L KL++ L R+ L+ L ++ LL R + L LPSL P TF +F A+ T E+ FI + ++ +FE A L +G W + S Q+RQ + S ++V E +RRA R + + + MA++ W R L S GAW+ + PR ++LS+ E RMRLKL N +++PH +A+ RD P + L LA VT E +V + E L ED+ E++ A+ + D+ + S++CQLVT++ VV G +E+T +V +YD S E +DF+ L +LREV+ RR+NLR+SA+E F +D+++YF+NF + ++ Y L RP + Y ++P +LR S LT KWV REISNFEYLMQLNTI+GRTYNDL+QYPVFPWV+ D+ S T+DL NP ++RDL+KP+G +N K A+ ++++Y+SF DP+G + HY THYSN G++HYL+RVEPFTSLH++LQ G+FDC+DRQF+S+A W+ + + DVKELIPEFF FP+FL N N F+LG Q T E+V DV LPPWA + DFI HR+ALESEYVS +LH WIDLIFGYKQRG AE+ALNVF + +YEGAVDLD + D+ R+A EG+I+NFGQTP QLLK+PHP R + E L R+ + + + + +++ P+V V +P S + PD L+T+ ++GL G H W PY SN FSF+ D + S QR L G P S + A DG L+ G+WD S+RV RGK
Sbjct: 1455 WRGVEGSDEAAWRERGQVFSVLTQLGASATLVRPPDCIKRSLLEMMLESALTDIKEAPVGVLASLTQQALWLLRLLQDFLCAEGHGNQEL--WSEKLFEGVCSLLDRLGAWPHLANGTADLREMAQIGLRLVLGYILLE-DPQLHAQAYVRLHMLLQTAVPARREEACYVLSKLEAALGRVLNTSSLESATDEAGSPLAAAAAAAAAERCSWLVPLVRTLLDR------AYEPLGLQWGLPSLPPTNGSPTFFEDFQAFCATPEWRHFIDKQVQPTMSQFEMDTYAKSHDLMSG-FWNACYDMLMSSGQRRQWERAQSRRAFQELVL-EPAQRRARLEGLRYTAVLKQQATQHSMALLH--WGALWRQLASPCGAWALRDTPIPR-WKLSSAETYSRMRLKLVPNHHFDPHLEASALRDNLG---EVPLTPTEEASLPLA-VTKE---AKVSTPPELL--QEDQLGEDELAELETPMEAAELDEQREKLVLSAECQLVTVVAVVPGLLEVTTQNVYFYDGSTERVETEEGIGYDFRRPLAQLREVHLRRFNLRRSALELFFIDQANYFLNFPCKVGTTPVSSPSQTPRPQPGPIPPHTQVRNQVYSWLLRLRPPSQGYLSSRSPQEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWASSPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVTDERERKALEGIISNFGQTPCQLLKEPHPTRLSAEEAAHRLARLDTNSPSIFQHLDELKAFFAEVVSDGVPLVLALVPHRQPHSFITQGSPDLLVTVSASGLLGTHSWLPYDRNISNYFSFSKDPTMG--SHKTQRLLSGPWVPGSGVSGQALAVAPDGKLLFSGGHWDGSLRVTALPRGK 2493 The following BLAST results are available for this feature:
BLAST of TCONS_00065483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.