TCONS_00065475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065475
Unique NameTCONS_00065475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065475 ID=TCONS_00065475|Name=TCONS_00065475|organism=Clytia hemisphaerica|type=transcript|length=255bp
NNCTAAAGTCCCCATGCTCTTATTGGGAATCTGGGATTTAGGGTCAAACT
CAGGCCCAGTCCCTCAAAGCATGGGTAAGTAAGGCAAAAGAGACAAATGA
TAAACAGGCAAAACACAGAAGGGAATGATGACTCTTGACTCCTTGACCAA
AACTCTGTTCTGCAAAATATTCTTGGAGTCATCATTATggggaaagtgaa
agtgaaagtaaataaTAACAAGATGGTAGCCTAGCTATGTATAAAAGAGA
AATAT
Run BLAST on NCBI

transcript from alignment at scaffold_439:543054..543308

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065475 ID=TCONS_00065475|Name=TCONS_00065475|organism=Clytia hemisphaerica|type=transcript|length=255bp|location=Sequence derived from alignment at scaffold_439:543054..543308 (Clytia hemisphaerica)
ATATTTCTCTTTTATACATAGCTAGGCTACCATCTTGTTAttatttactt
tcactttcactttccccATAATGATGACTCCAAGAATATTTTGCAGAACA
GAGTTTTGGTCAAGGAGTCAAGAGTCATCATTCCCTTCTGTGTTTTGCCT
GTTTATCATTTGTCTCTTTTGCCTTACTTACCCATGCTTTGAGGGACTGG
GCCTGAGTTTGACCCTAAATCCCAGATTCCCAATAAGAGCATGGGGACTT
TAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041037XLOC_041037Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065475-exon-scaffold_439-1491911889:543054..543308TCONS_00065475-exon-scaffold_439-1491911889:543054..543308Clytia hemisphaericaexon
TCONS_00065475-exon-scaffold_439-1510915933:543054..543308TCONS_00065475-exon-scaffold_439-1510915933:543054..543308Clytia hemisphaericaexon
TCONS_00065475-exon-scaffold_439-1575043694:543054..543308TCONS_00065475-exon-scaffold_439-1575043694:543054..543308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:543054..543308 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	4.63893	2.16389	12.6335	6.06793	4.5566	4.19249	2.03387	1.52614	1.43629	2.18018	4.63948	5.73738	2.8175	1.71539	0.53212	1.09081	0	0.788491	0	0.897285	0.812736	0.0631804	0	2.51266	0	1.03729	1.5735	1.60315
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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