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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065458 ID=TCONS_00065458|Name=TCONS_00065458|organism=Clytia hemisphaerica|type=transcript|length=3384bp
GTAAACTAGGAACGTGATTACATAATCTCTCTTACGATTGCACGATAATT
GGTCATTAGGGAATAATTAATACTAAGGTCTTTAAGCTGCACGTGCGCTC
ATGGCACGAAAATTGGTCTCTtgggaattaaaaaaaactaacaaaaaaat
tacaaaaacatcTAAGACACCCGATCCACTTTTCACGACTGTCTTTCCGA
TACTACCGAGTAAATGTTCGCCGGTTTTTTACCTGTCTCAACAAAGTTAT
GAATGTTATAATGATCCGAGCGAGAGAGCAGAATGCTCAAACAgagaatt
tttcgaaatttatttttcccgtTGGgcagttttctgaaaattaatttttt
cacgaTTGTAGTTTTTCAGTTGTATCCTTTCCATAGTCTTTGGTTGCTTT
AGTTCACGCAATTTTCACACAATTAGGCGAGGAAGACCGTAGGGAGATGT
CNATCTTTGGTTGCTTTAGTTCACGCAATTTTCACCACACAATTAGGCGA
GGAAGACCGTAGGGAGATGACGTATGAATTATCCGAGAGGAACTGAATTA
TTTAAACTCGAGCGTGTGTAAAAACGACTTTTGAGTTATCTCCCTACAAT
CAAACCTTTTCATTTCAATTATAGAAGAAGTTTGGCTAAATTTTCCGTAA
TAccactttttcattcaaatcctTAGATACAAAGCCCTAGAAGCTATCAT
GCATAAATTCGTCCCCTAATCCCTTTTCTTACCACTTGACACGTGTCAGT
CCGAAATTTCCCATTCctataatatttctggaaaagcacAGTTATCGTTG
GGTTTTTAAGGGAATTTTGAAGGAAACGTTGCACGGTGGGCCCAGACTCT
TTGAGaatgaaagtttgagaaaatgATGCCAACAAAgtaaaaattgataa
ttttctcTTCGCAAAAACTATCAAGccgaaaaaaaaaggaaagacgCTAT
TCCCATCTCGCTTTTAGAAGATCTATCCGTAATATTTCTGTTTACGAATT
TGATTACGCAGTCAGTCCTCAATTTTAAAGGAAATACAATTTGCATAAAA
AGACAGATTGAGGTATTTTTGTTGTTTAGTTCATTTTGTTTTCAACAGCA
AAAACCGACTATAATTTTATTACttacaaatatttcaaattctacGATAT
AAATCTTACATCATTCGATAAGCAATCGAGGTTAATTTTTCTTCCGTCAA
ACGAAGACTTTCTAGGCAAACAAACCGATAAATTAATTCGATTTTGGCAA
AACCAAGGAACCTAAAAGCGAAAGGAACAACAAAACTCTTCTAAGAGTTT
AGAGAACAAAATCCGACGAtgataatataatttttgacaCAATCAGAGAT
TTGTCAAATTATTCATtgccaaaaatctttttctaggcaacaattttttt
ctttccaagaGTTTTCTAATGACTTCAAAAGGCTCTTGTGGCCTCAGTTT
TGCTTCGAACGCCAATCGACGTAGAATTTTCCGCCAATTCcaaaattgca
atgaaaaagCAAGTAAGAGTTTCTGTTTCAAAGTTATGGGCTTTTGAAGT
ACTACCGGTTGACCCCTCTACTACGAGTAAACGTTCTAAACATGAATATT
TCTGTCGCAAAAGTAAAAACGTTAGAGGGTATAAAGAGTATTGAGTAAGT
TTAGAAACTCAGAAAGGAATAAAAACACGACAGAGTTGTTTAAAAGGCAA
GTTGATAAACCCAACAAGCGATAATTCGTTTGTTTTATTAGATTATATAC
ATATATGTCTAACATCAAGATTGACAGTAAATGTTATTTCCACATCAACA
AGCAGTCAGGAGCATCAAGAAAGAAGAATACCAACTAAGAATAGTTCAAG
GCTTGGAAACTGCTCCAAGTGAAGACACTTTTTATGGTTTAACAACAAAG
AGTTCCAATAGGGAATTTATACTAAACTTAAGATATGTTAACATCATCTG
GAACCTTCCAGCGTTTTATAGCCATTGTTACTATTACCAAAAACCAAAAA
GGCCAATGAATAATTCTGATTCCTTAAGGGCAAAATCCATGCCAATTTCC
ATTGCTCTTAGCCTGGCGCTTTGGTTTTGACGGGTTTAACAAGCAAGCCA
AACTTGGAACACAAGACACAAGAAAAGTAAGCAACACTTATGAGAATCAA
CAGCATTAACCACCTAAATAAATCACGTCGACATCCGACAAGACAAAAGG
AAAACGAAAGaagtagaaaaagtaaaaagaatggAGGACATCGAATAACC
CGAACGCACACGTCGTATACCTAAAAGCAAAGAAAAGAAATCTGAGGTTC
TAATTCCAAGGTGCGAGAAAGTCTTACCACGAcctcaaacaattttttga
aagacaaATTCATTGACTTTGACAACTTTGAtaaaataccgtattacttc
gaataaacgacGGGTCCGAATAAAACTGAATGAGATACAGGAAGAGTCAC
TCCAAATAGACCTTGGAAATGAATGATTTCAGCTGAAGTACGCGAAGTAA
ATCAGGTAAGAGGGAGAACAAAATCAGCAACTTCTCAACTTAAGGACGAA
CCACCGAAGCGACTGGcaacaaaaattgattgaagacgaaaaaaacattt
caaaagatCGATTTGCAATCGATTCATCGGGACGATGAAATACGACAGGA
AACGAAAATTGTCCCTGAACCCCCTCTAGTATCGGCTTTGCAACACAAGT
TTGTCCCTTCTAAGGTCTTCCACAACTTCAAATAGATTAAAAGACCAAAT
CGACGCATACATAAGAGAAGAAAAACAACGAAAGGGATTTTTTTTCACCC
CTTGCTGAAACAGATGTTTTACAGCAGTCTGCAAAATTTCCAAGGATGAA
AAATCATGTCATAAGAAAGGAAAACACAATGACGAAATAAATCCACAACG
GCGCGTTGATAAAAACCTTCCTGGGTCACTAAATAAGGCTTATCGAATGC
TATAAAatttaaatataaaatataaaatattttgagaagCTATAATAGAT
GAACAAAACCAAAGTAATCGCTCATAGTCCTGGCATGCCGAGTTCGCAAG
ACCTAGCAACCtaaaaaaaagctttcaaatttttgcgaaaaactgAATTA
CCAAAGCACCAATGTTGACTCCATTTCGATGCCCAAAATTTTAAACTCTG
AGTCTGGAACTAAAGTGCAAAATCCGCCCTCCATTACCTGGAAACACAAC
GATGACACCGCCCCCTGGAATTTATACCTTTCGGATAAAAAGAAAAGTGG
TTATTACGGGATACATAGCCAAACAGCCGTTttacaatagacgatatcgg
ctttcgataaatgcaatgcattctggtttctagggactctcaaaggaatt
ataatctattataattgatctattataattcctt Run BLAST on NCBI transcript from alignment at scaffold_439:72985..76368 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065458 ID=TCONS_00065458|Name=TCONS_00065458|organism=Clytia hemisphaerica|type=transcript|length=3384bp|location=Sequence derived from alignment at scaffold_439:72985..76368 (Clytia hemisphaerica)
aaggaattataatagatcaattataatagattataattcctttgagagtc
cctagaaaccagaatgcattgcatttatcgaaagccgatatcgtctattg
taaAACGGCTGTTTGGCTATGTATCCCGTAATAACCACTTTTCTTTTTAT
CCGAAAGGTATAAATTCCAGGGGGCGGTGTCATCGTTGTGTTTCCAGGTA
ATGGAGGGCGGATTTTGCACTTTAGTTCCAGACTCAGAGTTTAAAATTTT
GGGCATCGAAATGGAGTCAACATTGGTGCTTTGGTAATTcagtttttcgc
aaaaatttgaaagcttttttttaGGTTGCTAGGTCTTGCGAACTCGGCAT
GCCAGGACTATGAGCGATTACTTTGGTTTTGTTCATCTATTATAGcttct
caaaatattttatattttatatttaaatTTTATAGCATTCGATAAGCCTT
ATTTAGTGACCCAGGAAGGTTTTTATCAACGCGCCGTTGTGGATTTATTT
CGTCATTGTGTTTTCCTTTCTTATGACATGATTTTTCATCCTTGGAAATT
TTGCAGACTGCTGTAAAACATCTGTTTCAGCAAGGGGTGAAAAAAAATCC
CTTTCGTTGTTTTTCTTCTCTTATGTATGCGTCGATTTGGTCTTTTAATC
TATTTGAAGTTGTGGAAGACCTTAGAAGGGACAAACTTGTGTTGCAAAGC
CGATACTAGAGGGGGTTCAGGGACAATTTTCGTTTCCTGTCGTATTTCAT
CGTCCCGATGAATCGATTGCAAATCGatcttttgaaatgtttttttcgtc
ttcaatcaatttttgttgCCAGTCGCTTCGGTGGTTCGTCCTTAAGTTGA
GAAGTTGCTGATTTTGTTCTCCCTCTTACCTGATTTACTTCGCGTACTTC
AGCTGAAATCATTCATTTCCAAGGTCTATTTGGAGTGACTCTTCCTGTAT
CTCATTCAGTTTTATTCGGACCCgtcgtttattcgaagtaatacggtatt
ttaTCAAAGTTGTCAAAGTCAATGAATttgtctttcaaaaaattgtttga
ggTCGTGGTAAGACTTTCTCGCACCTTGGAATTAGAACCTCAGATTTCTT
TTCTTTGCTTTTAGGTATACGACGTGTGCGTTCGGGTTATTCGATGTCCT
ccattctttttactttttctacttCTTTCGTTTTCCTTTTGTCTTGTCGG
ATGTCGACGTGATTTATTTAGGTGGTTAATGCTGTTGATTCTCATAAGTG
TTGCTTACTTTTCTTGTGTCTTGTGTTCCAAGTTTGGCTTGCTTGTTAAA
CCCGTCAAAACCAAAGCGCCAGGCTAAGAGCAATGGAAATTGGCATGGAT
TTTGCCCTTAAGGAATCAGAATTATTCATTGGCCTTTTTGGTTTTTGGTA
ATAGTAACAATGGCTATAAAACGCTGGAAGGTTCCAGATGATGTTAACAT
ATCTTAAGTTTAGTATAAATTCCCTATTGGAACTCTTTGTTGTTAAACCA
TAAAAAGTGTCTTCACTTGGAGCAGTTTCCAAGCCTTGAACTATTCTTAG
TTGGTATTCTTCTTTCTTGATGCTCCTGACTGCTTGTTGATGTGGAAATA
ACATTTACTGTCAATCTTGATGTTAGACATATATGTATATAATCTAATAA
AACAAACGAATTATCGCTTGTTGGGTTTATCAACTTGCCTTTTAAACAAC
TCTGTCGTGTTTTTATTCCTTTCTGAGTTTCTAAACTTACTCAATACTCT
TTATACCCTCTAACGTTTTTACTTTTGCGACAGAAATATTCATGTTTAGA
ACGTTTACTCGTAGTAGAGGGGTCAACCGGTAGTACTTCAAAAGCCCATA
ACTTTGAAACAGAAACTCTTACTTGctttttcattgcaattttgGAATTG
GCGGAAAATTCTACGTCGATTGGCGTTCGAAGCAAAACTGAGGCCACAAG
AGCCTTTTGAAGTCATTAGAAAACtcttggaaagaaaaaaattgttgcct
agaaaaagatttttggcaATGAATAATTTGACAAATCTCTGATTGtgtca
aaaattatattatcaTCGTCGGATTTTGTTCTCTAAACTCTTAGAAGAGT
TTTGTTGTTCCTTTCGCTTTTAGGTTCCTTGGTTTTGCCAAAATCGAATT
AATTTATCGGTTTGTTTGCCTAGAAAGTCTTCGTTTGACGGAAGAAAAAT
TAACCTCGATTGCTTATCGAATGATGTAAGATTTATATCgtagaatttga
aatatttgtaaGTAATAAAATTATAGTCGGTTTTTGCTGTTGAAAACAAA
ATGAACTAAACAACAAAAATACCTCAATCTGTCTTTTTATGCAAATTGTA
TTTCCTTTAAAATTGAGGACTGACTGCGTAATCAAATTCGTAAACAGAAA
TATTACGGATAGATCTTCTAAAAGCGAGATGGGAATAGcgtctttccttt
ttttttcggCTTGATAGTTTTTGCGAAgagaaaattatcaatttttacTT
TGTTGGCATcattttctcaaactttcattCTCAAAGAGTCTGGGCCCACC
GTGCAACGTTTCCTTCAAAATTCCCTTAAAAACCCAACGATAACTgtgct
tttccagaaatattatagGAATGGGAAATTTCGGACTGACACGTGTCAAG
TGGTAAGAAAAGGGATTAGGGGACGAATTTATGCATGATAGCTTCTAGGG
CTTTGTATCTAaggatttgaatgaaaaagtggTATTACGGAAAATTTAGC
CAAACTTCTTCTATAATTGAAATGAAAAGGTTTGATTGTAGGGAGATAAC
TCAAAAGTCGTTTTTACACACGCTCGAGTTTAAATAATTCAGTTCCTCTC
GGATAATTCATACGTCATCTCCCTACGGTCTTCCTCGCCTAATTGTGTGG
TGAAAATTGCGTGAACTAAAGCAACCAAAGATNGACATCTCCCTACGGTC
TTCCTCGCCTAATTGTGTGAAAATTGCGTGAACTAAAGCAACCAAAGACT
ATGGAAAGGATACAACTGAAAAACTACAAtcgtgaaaaaattaattttca
gaaaactgcCCAacgggaaaaataaatttcgaaaaattctcTGTTTGAGC
ATTCTGCTCTCTCGCTCGGATCATTATAACATTCATAACTTTGTTGAGAC
AGGTAAAAAACCGGCGAACATTTACTCGGTAGTATCGGAAAGACAGTCGT
GAAAAGTGGATCGGGTGTCTTAgatgtttttgtaatttttttgttagttt
tttttaattcccaAGAGACCAATTTTCGTGCCATGAGCGCACGTGCAGCT
TAAAGACCTTAGTATTAATTATTCCCTAATGACCAATTATCGTGCAATCG
TAAGAGAGATTATGTAATCACGTTCCTAGTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065458-exon-scaffold_439-1491911889:72985..76368 | TCONS_00065458-exon-scaffold_439-1491911889:72985..76368 | Clytia hemisphaerica | exon |
| TCONS_00065458-exon-scaffold_439-1510915933:72985..76368 | TCONS_00065458-exon-scaffold_439-1510915933:72985..76368 | Clytia hemisphaerica | exon |
| TCONS_00065458-exon-scaffold_439-1575043694:72985..76368 | TCONS_00065458-exon-scaffold_439-1575043694:72985..76368 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:72985..76368 . |
Blast
The following BLAST results are available for this feature:
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