TCONS_00065443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065443
Unique NameTCONS_00065443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065443 ID=TCONS_00065443|Name=TCONS_00065443|organism=Clytia hemisphaerica|type=transcript|length=522bp
GAGGATGTGGAACACCACAAGTATGACCTTAACTTTTTTGTGCAAATCTT
TCGATTGTAGATGGGAAACTGATGACGAACTCAATGACGTTCTTATCACC
CCGGAGCAAATCGCGATATTTAACGATGGTCCTATGACAAGGGATGTCGT
AAAGATTCTCGGAAAAGCATCAGATGAGTGTGAAAGTTTTCTCCCATCAA
GAACTGAATTTCATTTGGTTAGAGACTGGTTATTGGCCGCCATCGCTCTT
GCTAATGCTCACAgATCCGGAGTCCCAGCAAACATCACCTTAAAGGAATA
TGAAAAAGCAATATCTGAAGACGACTACAAAATTATCAAAGTTCGTTCTC
ATAAAACCTTCTTCAAACACGGTTATGCTCACGTCACATTATCAAATCTT
GTTTTCCAACGCCTAAAGCTTTACAAGGAGTACATTAGACCTACGTTTGC
TCGTGACAAAGAGTGTACAAATCTTTTCATGAGCCATAGCGGAAGAGCAA
TGGAGTCAGGGGCGGTGAGCAG
Run BLAST on NCBI

protein sequence of TCONS_00065443-protein

>TCONS_00065443-protein ID=TCONS_00065443-protein|Name=TCONS_00065443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
RMWNTTSMTLTFLCKSFDCRWETDDELNDVLITPEQIAIFNDGPMTRDVV
KILGKASDECESFLPSRTEFHLVRDWLLAAIALANAHRSGVPANITLKEY
EKAISEDDYKIIKVRSHKTFFKHGYAHVTLSNLVFQRLKLYKEYIRPTFA
RDKECTNLFMSHSGRAMESGAVS
Run BLAST on NCBI

transcript from alignment at scaffold_439:547421..548133-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065443 ID=TCONS_00065443|Name=TCONS_00065443|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at scaffold_439:547421..548133- (Clytia hemisphaerica)
GAGGATGTGGAACACCACAAGTATGACCTTAACTTTTTTGTGCAAATCTT
TCGATTGTAGATGGGAAACTGATGACGAACTCAATGACGTTCTTATCACC
CCGGAGCAAATCGCGATATTTAACGATGGTCCTATGACAAGGGATGTCGT
AAAGATTCTCGGAAAAGCATCAGATGAGTGTGAAAGTTTTCTCCCATCAA
GAACTGAATTTCATTTGGTTAGAGACTGGTTATTGGCCGCCATCGCTCTT
GCTAATGCTCACAGGTATATTCAAAATATTTCATCCCCAGCTCACCATCC
AATGTTATAAAAAAACCGTCAACTTTTTCGCTAGATATTTAAAAAAAAAA
TACAAAAACATACTGGTACATGTTATTGTTCCTAGACATTACATATCTAA
TTATGTGAAGAATCCTATACTTAACTTAAAATTTCACTTATTGTATTATC
CTTAGATCCGGAGTCCCAGCAAACATCACCTTAAAGGAATATGAAAAAGC
AATATCTGAAGACGACTACAAAATTATCAAAGTTCGTTCTCATAAAACCT
TCTTCAAACACGGTTATGCTCACGTCACATTATCAAATCTTGTTTTCCAA
CGCCTAAAGCTTTACAAGGAGTACATTAGACCTACGTTTGCTCGTGACAA
AGAGTGTACAAATCTTTTCATGAGCCATAGCGGAAGAGCAATGGAGTCAG
GGGCGGTGAGCAG

Coding sequence (CDS) from alignment at scaffold_439:547421..548133-

>TCONS_00065443 ID=TCONS_00065443|Name=TCONS_00065443|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_439:547421..548133- (Clytia hemisphaerica)
ATCCGGAGTCCCAGCAAACATCACCTTAAAGGAATATGAAAAAGCAATAT
CTGAAGACGACTACAAAATTATCAAAGTTCGTTCTCATAAAACCTTCTTC
AAACACGGTTATGCTCACGTCACATTATCAAATCTTGTTTTCCAACGCCT
AAAGCTTTACAAGGAGTACATTAGACCTACGTTTGCTCGTGACAAAGAGT
GTACAAATCTTTTCATGAGCCATAGCGGAAGAGCAATGGAGTCAGGGGCG
GTGAGCAGGATGTGGAACACCACAAGTATGACCTTAACTTTTTTGTGCAA
ATCTTTCGATTGTAGATGGGAAACTGATGACGAACTCAATGACGTTCTTA
TCACCCCGGAGCAAATCGCGATATTTAACGATGGTCCTATGACAAGGGAT
GTCGTAAAGATTCTCGGAAAAGCATCAGATGAGTGTGAAAGTTTTCTCCC
ATCAAGAACTGAATTTCATTTGGTTAGAGACTGGTTATTGGCCGCCATCG
CTCTTGCTAATGCTCACAGATCCGGAGTCCCAGCAAACATCACCTTAAAG
GAATATGAAAAAGCAATATCTGAAGACGACTACAAAATTATCAAAGTTCG
TTCTCATAAAACCTTCTTCAAACACGGTTATGCTCACGTCACATTATCAA
ATCTTGTTTTCCAACGCCTAAAGCTTTACAAGGAGTACATTAGACCTACG
TTTGCTCGTGACAAAGAGTGTACAAATCTTTTCATGAGCCATAGCGGAAG
AGCAATGGAGTCAGGGGCGGTGAGCAGGATGTGGAACACCACAAGTATGA
CCTTAACTTTTTTGTGCAAATCTTTCGATTGTAGATGGGAAACTGATGAC
GAACTCAATGACGTTCTTATCACCCCGGAGCAAATCGCGATATTTAACGA
TGGTCCTATGACAAGGGATGTCGTAAAGATTCTCGGAAAAGCATCAGATG
AGTGTGAAAGTTTTCTCCCATCAAGAACTGAATTTCATTTGGTTAGAGAC
TGGTTATTGGCCGCCATCGCTCTTGCTAATGCTCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041010XLOC_041010Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065443-proteinTCONS_00065443-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065443-exon-scaffold_439-1575043694:547870..548133TCONS_00065443-exon-scaffold_439-1575043694:547870..548133Clytia hemisphaericaexon
TCONS_00065443-exon-scaffold_439-1575043694:547421..547678TCONS_00065443-exon-scaffold_439-1575043694:547421..547678Clytia hemisphaericaexon
TCONS_00065443-exon-scaffold_439-1510915933:547870..548133TCONS_00065443-exon-scaffold_439-1510915933:547870..548133Clytia hemisphaericaexon
TCONS_00065443-exon-scaffold_439-1510915933:547421..547678TCONS_00065443-exon-scaffold_439-1510915933:547421..547678Clytia hemisphaericaexon
TCONS_00065443-exon-scaffold_439-1491911889:547870..548133TCONS_00065443-exon-scaffold_439-1491911889:547870..548133Clytia hemisphaericaexon
TCONS_00065443-exon-scaffold_439-1491911889:547421..547678TCONS_00065443-exon-scaffold_439-1491911889:547421..547678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:547421..548133 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326538	0.442126	0	0	16.3439	11.649	2.76879	5.78799	0.832634	1.05748	0.544117	1.01644	0.392664	0.514069	0.193087	0.138141	0	0.174428	0	0	0	0.160364	0	0.118154	0.121696	0	0	0	0	0.128177
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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