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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065442 ID=TCONS_00065442|Name=TCONS_00065442|organism=Clytia hemisphaerica|type=transcript|length=3247bp
attcaacatggctgcctctttaaaaaaaggtctattgcagtTTATCATTC
TCTactaatattttaaatttgctgATTTAGAAAAgtatataatgataaaa
aaactttttcacgaAAGAAAGAAATATCAGTAGAAGAGCTTCCTCAAAAG
ATAGAGCTGATGCTGTATGCACCACCAaccaagaaacaaaaaaataaaaa
gcggAACCCAGAACAGGTCTACTGCCCAGAACTAGGGTTTTCCCCCGCAC
TGACACATGAGATTATAACAAAACTTAGAAATAAAAAGCTTGAATCAGGA
AAATAGAGGATGGTTAATGAAATACCACTTCATATTTTGTTCTACTCTAG
CCTTCTTAACCTTTTTAAATATTGTGACAGGACATGTATCTTACATTTGA
tatttcgattgatttttaaccTGTAAATTTGACTTTATGACTTTTTATCA
TTAGATTATCAATAGTAAATTATCAATAGAATTTCACTGTTTATGTTGCA
AATGCGTTTAGGACTAATTTCTCGCTTGTCTCTACACCCCAAAAATTAAG
GACATGTATACATAAGAGTCTTGCAAATTTAAGGGGGAGTAAAACTTAAG
GGACACCTCAAAACCATCTTTAAGCTTTAAGGGGGGATAAATTGATAAGG
GGTGATTTGTGTTTTAAGGGGGGACTCAAAATCATGGATGAAACCATGTT
AATAAACTAGGAAAATCTAGCATTTGCTGCAAAATTGAGAAGAAAACATA
AAATCGAAAActctttttatgaccaaaaaatATAAAGACTAAAATATATG
AGAAACTTTTACAAACGGCATGCTACTCTACGCGTGGCAGTTTTAGTGCT
TTCTCCAACTAGCCAGcgtttcaaaatttcattgaagtCTGCGTCTGTAA
GTTTGCGAAACTTACAGATTCGCATGCAATGGCTTAAGTTTTCTGGGAGT
AGTCTCTTTCTTTGAGGAGTCAGAATCAGGTTCATTAGAGAAAAGGACGT
CTTGACTTCTGCCGTCGAGGGTGGAATGAGAGCAGCGAGTCCCAATACAG
TCGTGATGTCTGGATAAACAATCAAGAACTGTTCATTTGCTGGCCAATCC
TTGAACAGCATGTCGAAGGTGtagatttgattttttgtcttaGTTTTGTA
GCTTCAGCCTCCATTTGTTTGAGCTTTTGCTTTTTCTTCGAGATGTTGGT
TGGAGAAAATATTGAGCTCATCAAATCCAGCTCCTTTTGCTTTGTGGTGA
TCTCTTCCTCTTTTTGATGGAGTTTGACCTTTTGACTtgattcaaataaa
tttttgttgttcagagcaattttttgaaatactcgTACTGGACAATCAAG
TTTGGCCCATTCAATGCTGGCTGAACAGATTCTTTGCCATCAGCTAACAA
AGACGAGAACCGTAATAGGAGGCCAAATCTTCCACCCATTTCTTTCTGTG
CTCTATCAATAAGTTTACATCATCTGGCAAAgagcagaattttttttctt
gaagattGAGTTTCATAACTCAATTTAAGATTGAGTTACCCCTGGAAATA
TGCctggtgtagtaactgcaatgGGTGGTGTTCTAAAAAAAAGTACTGAA
AAGGCACTTACTAcacatactgtcttgtagtaactgcgtgccccccccct
gcACCATGTCCAATCCAccacataaaaatttcaaagaaaatatagAGGAG
CTTTTATTAATGGGATGCTACGATGCAGAAAACATTTGGTGTGATGGACC
AGACACAGTAcaaattttcgcaattcacCCAAAGCCAAAGTATCAATTTG
TGCACAGAATGAATTTTATGTCTATGTAAAAACGTATGGGAATATTTATT
TGTAGctcaaaatcgcaaaaattgcCTCTCTATAATCCAATGTTTCAAAA
TACCTGATAGTAAAGCTCAGTATGACATAACAAAAATATAATATGAGTCA
AAGAGCAACAACCTCTCAAAGGGAAGCTCTCCTGAAATCCTATACAAGAC
GTTTGAAGGATGATGTTAAATCTATATTGGACAATTACACTGAAGTAATC
AAAACTGCAAAGATTGAAGAAGAAACTCAAGTAGCAAGATTAACACAATC
GGTTGGTGATGCATATGAAGTTGATGTGCGAGGTGCAAACATTgtTCGTG
CTGGTGAGTCACTGATGAAATTAACAGCTGACATTAAAGAATTCCTAATT
TTAAATGACTATCCTGCTGTCaatgtttgtttacaaaaaaggaCACAACA
ATTGCGATCTATAGAAgaacaaacaaagaaaaaattatggGAACTTAGAG
AGCAAGTGGATGGTGATTTAAGACTTTTAGAAGATGAATATTTCTCGTCA
AAGTACAAATAGATTGCTTTCAATAGGCACACATCTAGAAGATTAGAATT
TTATTTCTTGCAGCGTGTGTCTCTTAGTAGAGATGTCTCTTTGAGATTGG
CATTAAAACAACTCGCACTAAAATCTTGTTTGCTTAAAAAGACCTCATTT
TTTAATGcttgtaatttttatttttttaattctagactttaaaacataat
tttattattttgcttcatttcttCATTAATTTCAAAGTGTTTGAAACCCT
CCAAAGAATATAATATATGATTAAAGTATTattactttaaaaaatactta
TTGCAAATTTGTGGTATTTATATCAGTCTCTCTTATTCCTAATTTTTTAT
GCATAGTAGCTAAGAAATGTATaaaatttcaaaggaaaatttatgaaaac
aaaattccAATCAACATGGATCAAGAGTTGAAAAACTTAGAAAGTTCAAC
TGTGGACCTATCAAAGGTTTCAGAAGAGTTGAAAATTGATCTGGTTCATT
tgggaaaaactggaaaaacaaaaattgtgaAATCTGATGATCCCAAAAAG
CTAACTCCAGGAACAACACTACCATTGGGAATTCCACCAGTCTATCCAGA
GTTAAAGGATGANAGACTTTTAGAAGATGAATATTTCTCGTCAAAGTACA
AATAGATTGCTTTCAATAGGCACACATCTAGAAGATTAGAATTTTATTTC
TTGCAACGTGTGTCTCTTAGTAGAGATGTCTCTTTGAGATTGGCATTAAA
ACAACTCGCACTAAAATCTTGTTTGCTTAAAAAGACCTCAATTTTTAATG
cttgtaatttttattttttttaattttagactttaaaacataattttatt
attttgcttcatttcttCATTAATTTCAAAGTGTTTGAAACCCTCCA Run BLAST on NCBI transcript from alignment at scaffold_439:506029..510386- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065442 ID=TCONS_00065442|Name=TCONS_00065442|organism=Clytia hemisphaerica|type=transcript|length=4358bp|location=Sequence derived from alignment at scaffold_439:506029..510386- (Clytia hemisphaerica)
ATTCAACATGGCTGCCTCTTTAAAAAAAGGTCTATTGCAGTTTATCATTC
TCTACTAATATTTTAAATTTGCTGATTTAGAAAAGTATATAATGATAAAA
AAACTTTTTCACGAAAGAAAGAAATATCAGTAGAAGAGCTTCCTCAAAAG
ATAGAGCTGATGCTGTATGCACCACCAACCAAGAAACAAAAAAATAAAAA
GCGGAACCCAGAACAGGTCTACTGCCCAGAACTAGGGTTTTCCCCCGCAC
TGACACATGAGATTATAACAAAACTTAGAAATAAAAAGCTTGAATCAGGA
AAATAGAGGATGGTTAATGAAATACCACTTCATATTTTGTTCTACTCTAG
CCTTCTTAACCTTTTTAAATATTGTGACAGGACATGTATCTTACATTTGA
TATTTCGATTGATTTTTAACCTGTAAATTTGACTTTATGACTTTTTATCA
TTAGATTATCAATAGTAAATTATCAATAGAATTTCACTGTTTATGTTGCA
AATGCGTTTAGGACTAATTTCTCGCTTGTCTCTACACCCCAAAAATTAAG
GACATGTATACATAAGAGTCTTGCAAATTTAAGGGGGAGTAAAACTTAAG
GGACACCTCAAAACCATCTTTAAGCTTTAAGGGGGGATAAATTGATAAGG
GGTGATTTGTGTTTTAAGGGGGGACTCAAAATCATGGATGAAACCATGTT
AATAAACTAGGAAAATCTAGCATTTGCTGCAAAATTGAGAAGAAAACATA
AAATCGAAAACTCTTTTTATGACCAAAAAATATAAAGACTAAAATATATG
AGAAACTTTTACAAACGGCATGCTACTCTACGCGTGGCAGTTTTAGTGCT
TTCTCCAACTAGCCAGCGTTTCAAAATTTCATTGAAGTCTGCGTCTGTAA
GTTTGCGAAACTTACAGATTCGCATGCAATGGCTTAAGTTTTCTGGGAGT
AGTCTCTTTCTTTGAGGAGTCAGAATCAGGTTCATTAGAGAAAAGGACGT
CTTGACTTCTGCCGTCGAGGGTGGAATGAGAGCAGCGAGTCCCAATACAG
TCGTGATGTCTGGATAAACAATCAAGAACTGTTCATTTGCTGGCCAATCC
TTGAACAGCATGTCGAAGGTGTAGATTTGATTTTTTGTCTTAGTTTTGTA
GCTTCAGCCTCCATTTGTTTGAGCTTTTGCTTTTTCTTCGAGATGTTGGT
TGGAGAAAATATTGAGCTCATCAAATCCAGCTCCTTTTGCTTTGTGGTGA
TCTCTTCCTCTTTTTGATGGAGTTTGACCTTTTGACTTGATTCAAATAAA
TTTTTGTTGTTCAGAGCAATTTTTTGAAATACTCGTACTGGACAATCAAG
TTTGGCCCATTCAATGCTGGCTGAACAGATTCTTTGCCATCAGCTAACAA
AGACGAGAACCGTAATAGGAGGCCAAATCTTCCACCCATTTCTTTCTGTG
CTCTATCAATAAGTTTACATCATCTGGCAAAGAGCAGAATTTTTTTTCTT
GAAGATTGAGTTTCATAACTCAATTTAAGATTGAGTTACCCCTGGAAATA
TGCCTGGTGTAGTAACTGCAATGGGTGGTGTTCTAAAAAAAAGTACTGAA
AAGGCACTTACTACACATACTGTCTTGTAGTAACTGCGTGCCCCCCCCCT
GCACCATGTCCAATCCACCACATAAAAATTTCAAAGAAAATATAGAGGAG
CTTTTATTAATGGGATGCTACGATGCAGAAAACATTTGGTGTGATGGACC
AGACACAGTACAAATTTTCGCAATTCACCCAAAGCCAAAGTATCAATTTG
TGCACAGAATGAATTTTATGTCTATGTAAAAACGTATGGGAATATTTATT
TGTAGCTCAAAATCGCAAAAATTGCCTCTCTATAATCCAATGTTTCAAAA
TACCTGATAGTAAAGCTCAGTATGACATAACAAAAATATAATATGAGTCA
AAGAGCAACAACCTCTCAAAGGGAAGCTCTCCTGAAATCCTATACAAGAC
GTTTGAAGGATGATGTTAAATCTATATTGGACAATTACACTGAAGTAATC
AAAACTGCAAAGGTAAGTTAAGTCTACACTTCACCCATATATTCTTTCTT
ATTCACATGGCTAATTGTTTGATTCGCATCATTTCAATCACAAAATTAAG
GAACTTCTAAATGCAAAGATTAGGACTTAAATTTATCAGGAGAATTTCTT
TAAACTAAATCCACTACTTCTTAAATGGTAATGACTTGTTTGTACAGGTC
CCGGCAAGTGAAGGGTATGTTTTCTTCCTTTATAGTCCCGCTAAGGGTCT
GAGGGGCGAAAGTTAGGCAACACACCCCCGTCAGCTTGAAACCCTAATAC
CCCCAGGTACAGGTTAAAAACTTTTTTCAATCCATATGGTAAAAATTTGT
TTTTATCAGCTGGGGTCAGGGTTGAAGCTTGAGAATGACATTTATGGGTC
TGTAAAATACACTAGCTTGTGAAATTGGTTGATTGCCGTGGTATTCTAGT
GGTAAAATAAGGAGCTTCTGAAATGGGGGTACTTTTCATGTGTGGGTTTG
AATACCACTAGGAACCTAACTTTGGCAAATTTCAAAAGTTCAAAGTTGAA
CTCTTAAATCCAACCGAGAAACTCGAGATCGAAGATAGAAAAATCTGCTT
TAACCCGTACAAAGAAGACAGGGTCTTCTTAAATGTTTGTGATACATTCA
GAAAATTGCTGGGTGTTTTTTTAGATTGAAGAAGAAACTCAAGTAGCAAG
ATTAACACAATCGGTTGGTGATGCATATGAAGTTGATGTGCGAGGTGCAA
ACATTGTATGTAACCATCTTTTTTACTGAAACTTAAAAATGTTCATATTT
TTAAAAAGGATAGTCAATTTTCAAAGAGGAAAATCTTCTATTTCATTTTA
TTTTATTTTATTAGACTTTATTGAGTATTAATTTTAATATTTTTCAGGTT
CGTGCTGGTGAGTCACTGATGAAATTAACAGCTGACATTAAAGAATTCCT
AATTTTAAATGACTATCCTGCTGTCAATGTTTGTTTACAAAAAAGGACAC
AACAATTGCGATCTATAGAAGAACAAACAAAGAAAAAATTATGGGAACTT
AGAGAGCAAGTGGATGGTGATTTAAGACTTTTAGAAGATGAATATTTCTC
GTCAAAGTACAAATAGATTGCTTTCAATAGGCACACATCTAGAAGATTAG
AATTTTATTTCTTGCAGCGTGTGTCTCTTAGTAGAGATGTCTCTTTGAGA
TTGGCATTAAAACAACTCGCACTAAAATCTTGTTTGCTTAAAAAGACCTC
ATTTTTTAATGCTTGTAATTTTTATTTTTTTAATTCTAGACTTTAAAACA
TAATTTTATTATTTTGCTTCATTTCTTCATTAATTTCAAAGTGTTTGAAA
CCCTCCAAAGAATATAATATATGATTAAAGTATTATTACTTTAAAAAATA
CTTATTGCAAATTTGTGGTATTTATATCAGTCTCTCTTATTCCTAATTTT
TTATGCATAGTAGCTAAGAAATGTATAAAATTTCAAAGGAAAATTTATGA
AAACAAAATTCCAATCAACATGGATCAAGAGTTGAAAAACTTAGAAAGTT
CAACTGTGGACCTATCAAAGGTTTCAGAAGAGTTGAAAATTGATCTGGTT
CATTTGGGAAAAACTGGAAAAACAAAAATTGTGAAATCTGATGATCCCAA
AAAGCTAACTCCAGGAACAACAGTAAGTATTGAAAATCAGTCTCACTGAT
TTCTTAAAAAACATTAGATTATTTCTGTAACTGAACTCGAGAATTATTCT
GCCATAAAACTTGAATTTATATTGAAATTCATAACAAACTTTTGAAAAAT
ATCTGAGTAAAATATGGTGAAATAAAGAACTAGCTTAGATACAATCTTAA
ACAAGCTGCATTGCCTGAAGAGAGCATCATTGTGAAACAAGCAATTATAT
AAGTTAGTTCTTTATTGTCGATAGTGCTACAATATATATTATAGAAAATC
TAAAAAGTTTTAAATATATTTTCATTTAGCTACCATTGGGAATTCCACCA
GTCTATCCAGAGTTAAAGGATGANAGACTTTTAGAAGATGAATATTTCTC
GTCAAAGTACAAATAGATTGCTTTCAATAGGCACACATCTAGAAGATTAG
AATTTTATTTCTTGCAACGTGTGTCTCTTAGTAGAGATGTCTCTTTGAGA
TTGGCATTAAAACAACTCGCACTAAAATCTTGTTTGCTTAAAAAGACCTC
AATTTTTAATGCTTGTAATTTTTATTTTTTTTAATTTTAGACTTTAAAAC
ATAATTTTATTATTTTGCTTCATTTCTTCATTAATTTCAAAGTGTTTGAA
ACCCTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065442-exon-scaffold_439-1575043694:508325..510386 | TCONS_00065442-exon-scaffold_439-1575043694:508325..510386 | Clytia hemisphaerica | exon |
| TCONS_00065442-exon-scaffold_439-1575043694:507582..507662 | TCONS_00065442-exon-scaffold_439-1575043694:507582..507662 | Clytia hemisphaerica | exon |
| TCONS_00065442-exon-scaffold_439-1575043694:506665..507439 | TCONS_00065442-exon-scaffold_439-1575043694:506665..507439 | Clytia hemisphaerica | exon |
| TCONS_00065442-exon-scaffold_439-1575043694:506029..506357 | TCONS_00065442-exon-scaffold_439-1575043694:506029..506357 | Clytia hemisphaerica | exon |
| TCONS_00065442-exon-scaffold_439-1510915933:508325..510386 | TCONS_00065442-exon-scaffold_439-1510915933:508325..510386 | Clytia hemisphaerica | exon |
| TCONS_00065442-exon-scaffold_439-1510915933:507582..507662 | TCONS_00065442-exon-scaffold_439-1510915933:507582..507662 | Clytia hemisphaerica | exon |
| TCONS_00065442-exon-scaffold_439-1510915933:506665..507439 | TCONS_00065442-exon-scaffold_439-1510915933:506665..507439 | Clytia hemisphaerica | exon |
| TCONS_00065442-exon-scaffold_439-1510915933:506029..506357 | TCONS_00065442-exon-scaffold_439-1510915933:506029..506357 | Clytia hemisphaerica | exon |
| TCONS_00065442-exon-scaffold_439-1491911889:508325..510386 | TCONS_00065442-exon-scaffold_439-1491911889:508325..510386 | Clytia hemisphaerica | exon |
| TCONS_00065442-exon-scaffold_439-1491911889:507582..507662 | TCONS_00065442-exon-scaffold_439-1491911889:507582..507662 | Clytia hemisphaerica | exon |
| TCONS_00065442-exon-scaffold_439-1491911889:506665..507439 | TCONS_00065442-exon-scaffold_439-1491911889:506665..507439 | Clytia hemisphaerica | exon |
| TCONS_00065442-exon-scaffold_439-1491911889:506029..506357 | TCONS_00065442-exon-scaffold_439-1491911889:506029..506357 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:506029..510386 - |
Blast
BLAST of TCONS_00065442 vs. Swiss-Prot (Human)
Match: MED22 (Mediator of RNA polymerase II transcription subunit 22 OS=Homo sapiens GN=MED22 PE=1 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 2.788e-43 Identity = 74/123 (60.16%), Postives = 99/123 (80.49%), Query Frame = 2
Query: 1949 QRATTSQREALLKSYTRRLKDDVKSILDNYTEVIKTAKIEEETQVARLTQSVGDAYEVDVRGANIVRAGESLMKLTADIKEFLILNDYPAVNVCLQKRTQQLRSIEEQTKKKLWELREQVDGD 2317
QRA +E LL+SY +RLKDD+KSI+DN+TE+IKTAKIE+ETQV+R TQ D YE+ VR ANIVRAGESLMKL +D+K+FLILND+P+VN + +R QQLR+++E+ +KL LR+++ D
Sbjct: 4 QRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDEISID 126
The following BLAST results are available for this feature:
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