TCONS_00065441 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065441
Unique NameTCONS_00065441
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065441 ID=TCONS_00065441|Name=TCONS_00065441|organism=Clytia hemisphaerica|type=transcript|length=3606bp
attcaacatggctgcctctttaaaaaaaggtctattgcagtTTATCATTC
TCTactaatattttaaatttgctgATTTAGAAAAgtatataatgataaaa
aaactttttcacgaAAGAAAGAAATATCAGTAGAAGAGCTTCCTCAAAAG
ATAGAGCTGATGCTGTATGCACCACCAaccaagaaacaaaaaaataaaaa
gcggAACCCAGAACAGGTCTACTGCCCAGAACTAGGGTTTTCCCCCGCAC
TGACACATGAGATTATAACAAAACTTAGAAATAAAAAGCTTGAATCAGGA
AAATAGAGGATGGTTAATGAAATACCACTTCATATTTTGTTCTACTCTAG
CCTTCTTAACCTTTTTAAATATTGTGACAGGACATGTATCTTACATTTGA
tatttcgattgatttttaaccTGTAAATTTGACTTTATGACTTTTTATCA
TTAGATTATCAATAGTAAATTATCAATAGAATTTCACTGTTTATGTTGCA
AATGCGTTTAGGACTAATTTCTCGCTTGTCTCTACACCCCAAAAATTAAG
GACATGTATACATAAGAGTCTTGCAAATTTAAGGGGGAGTAAAACTTAAG
GGACACCTCAAAACCATCTTTAAGCTTTAAGGGGGGATAAATTGATAAGG
GGTGATTTGTGTTTTAAGGGGGGACTCAAAATCATGGATGAAACCATGTT
AATAAACTAGGAAAATCTAGCATTTGCTGCAAAATTGAGAAGAAAACATA
AAATCGAAAActctttttatgaccaaaaaatATAAAGACTAAAATATATG
AGAAACTTTTACAAACGGCATGCTACTCTACGCGTGGCAGTTTTAGTGCT
TTCTCCAACTAGCCAGcgtttcaaaatttcattgaagtCTGCGTCTGTAA
GTTTGCGAAACTTACAGATTCGCATGCAATGGCTTAAGTTTTCTGGGAGT
AGTCTCTTTCTTTGAGGAGTCAGAATCAGGTTCATTAGAGAAAAGGACGT
CTTGACTTCTGCCGTCGAGGGTGGAATGAGAGCAGCGAGTCCCAATACAG
TCGTGATGTCTGGATAAACAATCAAGAACTGTTCATTTGCTGGCCAATCC
TTGAACAGCATGTCGAAGGTGtagatttgattttttgtcttaGTTTTGTA
GCTTCAGCCTCCATTTGTTTGAGCTTTTGCTTTTTCTTCGAGATGTTGGT
TGGAGAAAATATTGAGCTCATCAAATCCAGCTCCTTTTGCTTTGTGGTGA
TCTCTTCCTCTTTTTGATGGAGTTTGACCTTTTGACTtgattcaaataaa
tttttgttgttcagagcaattttttgaaatactcgTACTGGACAATCAAG
TTTGGCCCATTCAATGCTGGCTGAACAGATTCTTTGCCATCAGCTAACAA
AGACGAGAACCGTAATAGGAGGCCAAATCTTCCACCCATTTCTTTCTGTG
CTCTATCAATAAGTTTACATCATCTGGCAAAgagcagaattttttttctt
gaagattGAGTTTCATAACTCAATTTAAGATTGAGTTACCCCTGGAAATA
TGCctggtgtagtaactgcaatgGGTGGTGTTCTAAAAAAAAGTACTGAA
AAGGCACTTACTAcacatactgtcttgtagtaactgcgtgccccccccct
gcACCATGTCCAATCCAccacataaaaatttcaaagaaaatatagAGGAG
CTTTTATTAATGGGATGCTACGATGCAGAAAACATTTGGTGTGATGGACC
AGACACAGTAcaaattttcgcaattcacCCAAAGCCAAAGTATCAATTTG
TGCACAGAATGAATTTTATGTCTATGTAAAAACGTATGGGAATATTTATT
TGTAGctcaaaatcgcaaaaattgcCTCTCTATAATCCAATGTTTCAAAA
TACCTGATAGTAAAGCTCAGTATGACATAACAAAAATATAATATGAGTCA
AAGAGCAACAACCTCTCAAAGGGAAGCTCTCCTGAAATCCTATACAAGAC
GTTTGAAGGATGATGTTAAATCTATATTGGACAATTACACTGAAGTAATC
AAAACTGCAAAGATTGAAGAAGAAACTCAAGTAGCAAGATTAACACAATC
GGTTGGTGATGCATATGAAGTTGATGTGCGAGGTGCAAACATTgtTCGTG
CTGGTGAGTCACTGATGAAATTAACAGCTGACATTAAAGAATTCCTAATT
TTAAATGACTATCCTGCTGTCaatgtttgtttacaaaaaaggaCACAACA
ATTGCGATCTATAGAAgaacaaacaaagaaaaaattatggGAACTTAGAG
AGCAAGTGGATGGTGATTTAAGACTTTTAGAAGATGAATATTTCTCGTCA
AAGTACAAATAGATTGCTTTCAATAGGCACACATCTAGAAGATTAGAATT
TTATTTCTTGCAGCGTGTGTCTCTTAGTAGAGATGTCTCTTTGAGATTGG
CATTAAAACAACTCGCACTAAAATCTTGTTTGCTTAAAAAGACCTCATTT
TTTAATGcttgtaatttttatttttttaattctagactttaaaacataat
tttattattttgcttcatttcttCATTAATTTCAAAGTGTTTGAAACCCT
CCAAAGAATATAATATATGATTAAAGTATTattactttaaaaaatactta
TTGCAAATTTGTGGTATTTATATCAGTCTCTCTTATTCCTAATTTTTTAT
GCATAGTAGCTAAGAAATGTATaaaatttcaaaggaaaatttatgaaaac
aaaattccAATCAACATGGATCAAGAGTTGAAAAACTTAGAAAGTTCAAC
TGTGGACCTATCAAAGGTTTCAGAAGAGTTGAAAATTGATCTGGTTCATT
tgggaaaaactggaaaaacaaaaattgtgaAATCTGATGATCCCAAAAAG
CTAACTCCAGGAACAACACTACCATTGGGAATTCCACCAGTCTATCCAGA
GTTAAAGGATGTAATTGAACAATTACTCTTGTCACCTGGTGATATTCCTA
TTCATGCATTTCAACATTCTCAAAAAGTTTGGGAGCGTGAGAAAGATGTA
GAgagtttgtttgatttgaatttaacaCCAATAGCTACTGAGATTGTTAT
GGAAAGAGATCCAAAAACCGGAAAATTGCAAGCTATAAAAGAAggggtat
gaAACTACCATCACTAGACAAAATGTTGACATTGGAGGATCATGATACTG
AAGTTATTGATTTATCACCAAaaAGTCTACTTACACAACCTCCAGGGCTT
AGCCTTTCCGTCAATTTTGAGCTGCCAACGTCAAACTCCAGTGAAGCTAA
AGAGTCCACCATTCCAGATGATATGTTTGACACCAAACCAGTCAACATTT
CTGACATTTTGACCATGGATGTTGATTTGAGTGAACTCTATGTGGATGTT
GAGGAACCAGAAGGTGAGACCTGCTCCAAAGAAAGTCCTGTCGATATGGC
ATATACTGTCGAAGAAGATATCCCAGAAAACGTGCTCAAGgttgaAGAGA
CGAAGGATTGGAAGAAGCAACATGAAGGTGATAAGAAATGGTCTACTTTG
GATCAATCAGATGTCAGCGATTTTCATAAACAAGTTCCTGATATGGCTTT
CAAGGT
Run BLAST on NCBI

protein sequence of TCONS_00065441-protein

>TCONS_00065441-protein ID=TCONS_00065441-protein|Name=TCONS_00065441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MKLPSLDKMLTLEDHDTEVIDLSPKSLLTQPPGLSLSVNFELPTSNSSEA
KESTIPDDMFDTKPVNISDILTMDVDLSELYVDVEEPEGETCSKESPVDM
AYTVEEDIPENVLKVEETKDWKKQHEGDKKWSTLDQSDVSDFHKQVPDMA
FK
Run BLAST on NCBI

transcript from alignment at scaffold_439:502391..510386-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065441 ID=TCONS_00065441|Name=TCONS_00065441|organism=Clytia hemisphaerica|type=transcript|length=7996bp|location=Sequence derived from alignment at scaffold_439:502391..510386- (Clytia hemisphaerica)
ATTCAACATGGCTGCCTCTTTAAAAAAAGGTCTATTGCAGTTTATCATTC
TCTACTAATATTTTAAATTTGCTGATTTAGAAAAGTATATAATGATAAAA
AAACTTTTTCACGAAAGAAAGAAATATCAGTAGAAGAGCTTCCTCAAAAG
ATAGAGCTGATGCTGTATGCACCACCAACCAAGAAACAAAAAAATAAAAA
GCGGAACCCAGAACAGGTCTACTGCCCAGAACTAGGGTTTTCCCCCGCAC
TGACACATGAGATTATAACAAAACTTAGAAATAAAAAGCTTGAATCAGGA
AAATAGAGGATGGTTAATGAAATACCACTTCATATTTTGTTCTACTCTAG
CCTTCTTAACCTTTTTAAATATTGTGACAGGACATGTATCTTACATTTGA
TATTTCGATTGATTTTTAACCTGTAAATTTGACTTTATGACTTTTTATCA
TTAGATTATCAATAGTAAATTATCAATAGAATTTCACTGTTTATGTTGCA
AATGCGTTTAGGACTAATTTCTCGCTTGTCTCTACACCCCAAAAATTAAG
GACATGTATACATAAGAGTCTTGCAAATTTAAGGGGGAGTAAAACTTAAG
GGACACCTCAAAACCATCTTTAAGCTTTAAGGGGGGATAAATTGATAAGG
GGTGATTTGTGTTTTAAGGGGGGACTCAAAATCATGGATGAAACCATGTT
AATAAACTAGGAAAATCTAGCATTTGCTGCAAAATTGAGAAGAAAACATA
AAATCGAAAACTCTTTTTATGACCAAAAAATATAAAGACTAAAATATATG
AGAAACTTTTACAAACGGCATGCTACTCTACGCGTGGCAGTTTTAGTGCT
TTCTCCAACTAGCCAGCGTTTCAAAATTTCATTGAAGTCTGCGTCTGTAA
GTTTGCGAAACTTACAGATTCGCATGCAATGGCTTAAGTTTTCTGGGAGT
AGTCTCTTTCTTTGAGGAGTCAGAATCAGGTTCATTAGAGAAAAGGACGT
CTTGACTTCTGCCGTCGAGGGTGGAATGAGAGCAGCGAGTCCCAATACAG
TCGTGATGTCTGGATAAACAATCAAGAACTGTTCATTTGCTGGCCAATCC
TTGAACAGCATGTCGAAGGTGTAGATTTGATTTTTTGTCTTAGTTTTGTA
GCTTCAGCCTCCATTTGTTTGAGCTTTTGCTTTTTCTTCGAGATGTTGGT
TGGAGAAAATATTGAGCTCATCAAATCCAGCTCCTTTTGCTTTGTGGTGA
TCTCTTCCTCTTTTTGATGGAGTTTGACCTTTTGACTTGATTCAAATAAA
TTTTTGTTGTTCAGAGCAATTTTTTGAAATACTCGTACTGGACAATCAAG
TTTGGCCCATTCAATGCTGGCTGAACAGATTCTTTGCCATCAGCTAACAA
AGACGAGAACCGTAATAGGAGGCCAAATCTTCCACCCATTTCTTTCTGTG
CTCTATCAATAAGTTTACATCATCTGGCAAAGAGCAGAATTTTTTTTCTT
GAAGATTGAGTTTCATAACTCAATTTAAGATTGAGTTACCCCTGGAAATA
TGCCTGGTGTAGTAACTGCAATGGGTGGTGTTCTAAAAAAAAGTACTGAA
AAGGCACTTACTACACATACTGTCTTGTAGTAACTGCGTGCCCCCCCCCT
GCACCATGTCCAATCCACCACATAAAAATTTCAAAGAAAATATAGAGGAG
CTTTTATTAATGGGATGCTACGATGCAGAAAACATTTGGTGTGATGGACC
AGACACAGTACAAATTTTCGCAATTCACCCAAAGCCAAAGTATCAATTTG
TGCACAGAATGAATTTTATGTCTATGTAAAAACGTATGGGAATATTTATT
TGTAGCTCAAAATCGCAAAAATTGCCTCTCTATAATCCAATGTTTCAAAA
TACCTGATAGTAAAGCTCAGTATGACATAACAAAAATATAATATGAGTCA
AAGAGCAACAACCTCTCAAAGGGAAGCTCTCCTGAAATCCTATACAAGAC
GTTTGAAGGATGATGTTAAATCTATATTGGACAATTACACTGAAGTAATC
AAAACTGCAAAGGTAAGTTAAGTCTACACTTCACCCATATATTCTTTCTT
ATTCACATGGCTAATTGTTTGATTCGCATCATTTCAATCACAAAATTAAG
GAACTTCTAAATGCAAAGATTAGGACTTAAATTTATCAGGAGAATTTCTT
TAAACTAAATCCACTACTTCTTAAATGGTAATGACTTGTTTGTACAGGTC
CCGGCAAGTGAAGGGTATGTTTTCTTCCTTTATAGTCCCGCTAAGGGTCT
GAGGGGCGAAAGTTAGGCAACACACCCCCGTCAGCTTGAAACCCTAATAC
CCCCAGGTACAGGTTAAAAACTTTTTTCAATCCATATGGTAAAAATTTGT
TTTTATCAGCTGGGGTCAGGGTTGAAGCTTGAGAATGACATTTATGGGTC
TGTAAAATACACTAGCTTGTGAAATTGGTTGATTGCCGTGGTATTCTAGT
GGTAAAATAAGGAGCTTCTGAAATGGGGGTACTTTTCATGTGTGGGTTTG
AATACCACTAGGAACCTAACTTTGGCAAATTTCAAAAGTTCAAAGTTGAA
CTCTTAAATCCAACCGAGAAACTCGAGATCGAAGATAGAAAAATCTGCTT
TAACCCGTACAAAGAAGACAGGGTCTTCTTAAATGTTTGTGATACATTCA
GAAAATTGCTGGGTGTTTTTTTAGATTGAAGAAGAAACTCAAGTAGCAAG
ATTAACACAATCGGTTGGTGATGCATATGAAGTTGATGTGCGAGGTGCAA
ACATTGTATGTAACCATCTTTTTTACTGAAACTTAAAAATGTTCATATTT
TTAAAAAGGATAGTCAATTTTCAAAGAGGAAAATCTTCTATTTCATTTTA
TTTTATTTTATTAGACTTTATTGAGTATTAATTTTAATATTTTTCAGGTT
CGTGCTGGTGAGTCACTGATGAAATTAACAGCTGACATTAAAGAATTCCT
AATTTTAAATGACTATCCTGCTGTCAATGTTTGTTTACAAAAAAGGACAC
AACAATTGCGATCTATAGAAGAACAAACAAAGAAAAAATTATGGGAACTT
AGAGAGCAAGTGGATGGTGATTTAAGACTTTTAGAAGATGAATATTTCTC
GTCAAAGTACAAATAGATTGCTTTCAATAGGCACACATCTAGAAGATTAG
AATTTTATTTCTTGCAGCGTGTGTCTCTTAGTAGAGATGTCTCTTTGAGA
TTGGCATTAAAACAACTCGCACTAAAATCTTGTTTGCTTAAAAAGACCTC
ATTTTTTAATGCTTGTAATTTTTATTTTTTTAATTCTAGACTTTAAAACA
TAATTTTATTATTTTGCTTCATTTCTTCATTAATTTCAAAGTGTTTGAAA
CCCTCCAAAGAATATAATATATGATTAAAGTATTATTACTTTAAAAAATA
CTTATTGCAAATTTGTGGTATTTATATCAGTCTCTCTTATTCCTAATTTT
TTATGCATAGTAGCTAAGAAATGTATAAAATTTCAAAGGAAAATTTATGA
AAACAAAATTCCAATCAACATGGATCAAGAGTTGAAAAACTTAGAAAGTT
CAACTGTGGACCTATCAAAGGTTTCAGAAGAGTTGAAAATTGATCTGGTT
CATTTGGGAAAAACTGGAAAAACAAAAATTGTGAAATCTGATGATCCCAA
AAAGCTAACTCCAGGAACAACAGTAAGTATTGAAAATCAGTCTCACTGAT
TTCTTAAAAAACATTAGATTATTTCTGTAACTGAACTCGAGAATTATTCT
GCCATAAAACTTGAATTTATATTGAAATTCATAACAAACTTTTGAAAAAT
ATCTGAGTAAAATATGGTGAAATAAAGAACTAGCTTAGATACAATCTTAA
ACAAGCTGCATTGCCTGAAGAGAGCATCATTGTGAAACAAGCAATTATAT
AAGTTAGTTCTTTATTGTCGATAGTGCTACAATATATATTATAGAAAATC
TAAAAAGTTTTAAATATATTTTCATTTAGCTACCATTGGGAATTCCACCA
GTCTATCCAGAGTTAAAGGATGANAGACTTTTAGAAGATGAATATTTCTC
GTCAAAGTACAAATAGATTGCTTTCAATAGGCACACATCTAGAAGATTAG
AATTTTATTTCTTGCAACGTGTGTCTCTTAGTAGAGATGTCTCTTTGAGA
TTGGCATTAAAACAACTCGCACTAAAATCTTGTTTGCTTAAAAAGACCTC
AATTTTTAATGCTTGTAATTTTTATTTTTTTTAATTTTAGACTTTAAAAC
ATAATTTTATTATTTTGCTTCATTTCTTCATTAATTTCAAAGTGTTTGAA
ACCCTCCAAAGAATATAATATATGATTAAAGTATTATTACTTTAAAAAAT
ACTTATTGCAAATTTGTGGTATTTATATCAGTCTCTCTTATTCCTAATTT
TTTATGCATAGTAGCTAAGAAATGTATAAAATTTCAAAGGAAAATTTATG
AAAACAAAATTCCAATCAACATGGATCAAGAGTTGAAAAACTTAGAAAGT
TCAACTGTGGACCTATCAAAGGTTTCAGAAGAGTTGAAAATTGATCTGGT
TCATTTGGGAAAAACTGGAAAAACAAAAATTGTGAAATCTGATGATCCCA
AAAAGCTAACTCCAGGAACAACAGTAAGTATTGAAAATCAGTCTCACTGA
TTTCTTAAAAAACATTAGATTATTTCTGTAACTGAACTCGAGAATTATTC
TGCCATAAAACTTGAATTTATATTGAAATTCATAACAAACTTTTGAAAAA
TATCTGAGTAAAATATGGTGAAATAAAGAACTAGCTTAGATACAATCTTA
AACAAGCTGCATTGCCTGAAGAGAGCATCATTGTGAAACAAGCAATTATA
TAAGTTAGTTCTTTATTGTCGATAGTGCTACAATATATATTATAGAAAAT
CTAAAAAATTTTAAATATATTTTCATTTAGCTACCATTGGGAATTCCACC
AGTCTATCCAGAGTTAAAGGATGTAATTGAACAATTACTCTTGTCACCTG
GTGATATTCCTATTCATGCATTTCAACATTCTCAAAAGTAAATGACTTCA
TACTGTTATTAATTATAGGTACATGTTCTGGGACATGTGACTTGTGCCTT
GTCTATTCCAAAGGTTGTGTTATGCATTTAACTTGAACTGAGTAAAGTCT
CTCACACATACTTTAAATGTTCGAGATCGAATATTAATTAATCTAAGGTG
CTGTGGCTCATAATACTGCTTACAATGGATTTACGATTCATTGCCTAGGA
GAAAGACCAAAACAACGTCTAGTCTGTCCATATCTTCTGACGACTGGACG
ACAGATGAAGATTAGACAATATTTTATAAATTTAAAATTATTTCGTAGAG
GTCGATAGACATGTGAAATATAATTCTACGAATAAATAAATTACTTTGCT
TTTTTAGAGTTTGGGAGCGTGAGAAAGATGTAGAGAGTTTGTTTGATTTG
AATTTAACACCAATAGCTACTGAGATTGTTATGGAAAGAGATCCAAAAAC
CGGAAAATTGCAAGCTATAAAAGAAGTAAGCCAATATCTACATTTCCTTA
TTTAACAGGTCCTGTTGAGTTTATTGTTCTCAAATATACTTTGAATAATT
TAAGCTTTAGAATATCATCCTTACCATTACTTCAAGCTGTTAATGATCAA
TGTCATAAAAGAGGGTGGGCTTGGCAACAAACCGGCAATATTGCTCAAAT
TATTTACCTTTCCTCACTTGCAACCAATTGTTTTAAAAGCTACACTCTTA
AAATCAATTAGCTTGCTGTGCTATTTTTTTATGTTANAAATCATCAAAAA
CAGCGTAGTAGAATCTTTTTACTCTATTTTGTATTCAGTTTAGGTAGATT
TATTCCAGTAATTTAGCTTCTCCATCCAAAGTAAGGCTCAACAAAATAAT
TAAAAAACCAAGAGAACTTTTTATCTTGATTTTGATAACTTTGATAACGT
CAATTTCTTTCTTTTTTTTCCAGGGGGTATGAAACTACCATCACTAGACA
AAATGTTGACATTGGAGGATCATGATACTGAAGTTATTGATTTATCACCA
AGTATGTTGTTATTTCTATTGAAGTATTTTCTTGACTTATTCCTAAGTTA
AGATTTAGTTGGCTTTCCTATCAGAGACCTGAAAATCTAAAACTGACCTT
CTATTTTCAATTTAATGTAGCTGAATATTTTCAGTGGAATATTTTCAACC
AAATATGTTTTCTATGATGATTCCAAACCACTTCTTCAATTTTCATTTCA
GAAAGTCTACTTACACAACCTCCAGGGCTTAGCCTTTCCGTCAATTTTGA
GCTGCCAACGTCAAACTCCAGTGAAGCTAAAGGTATTTTTGAAAAGGTTT
TTCATTGGAACAATTAATTTACTTTAAATAATCCAGGGTAGCTAAAAAAT
TCAGTTTTTATCATAATGAAGAGCTGTTACGAATTATGCTTCAATTTACT
TTCAAGACGTGNTTTTAAAAAACTGACTTTTTTTCCATGTCAAAATTTCA
AAAAATCATCAAAAACAGCGTAGTAGAATCTTTTTACTCTATTTTGTATT
CAGTTTAGGTAGATTTATTCCAGTAATTTAGCTTCTCCATCCAAAGTAAG
GCTCAACAAAATAATTAAAAAACCAAGAGAACTTTTTATCTTGATTTTGA
TAACTTTGATAACGTCAATTTCTTTCTTTTTTTTCCAGGGGGTATGAAAC
TACCATCACTAGACAAAATGTTGACATTGGAGGATCATGATACTGAAGTT
ATTGATTTATCACCAAGTATGTTGTTATTTCTATTGAAGTATTTTCTTGA
CTTATTCCTAAGTTAAGATTTAGTTGGCTTTCCTATCAGAGACCTGAAAA
TCTAAAACTGACCTTCTATTTTCAATTTAATGTAGCTGAATATTTTCAGT
GGAATATTTTCAACCAAATATGTTTTCTATGATGATTCCAAACCACTTCT
TCAATTTTCATTTCAGAAATTCTACTTACACAACCTCCAGGGCTTAGCCT
TTCCATCAATTTTGAGCTGCCAACGTCAAACTCCAGTGAAGCCAAAGGTA
TTTTCATTGGAACAATTAATTTACTTTAAATAATCCAGGGTAGCTAAAAA
ATTCAGTTTTTATCATAATGAAGAGCTGTTACGAATTATGCTTCAATTTA
CTTTCAAGACGTGTCTGTTTTACCATTAAAAGATGCACTTTTACCAATCT
AAATTATAAATCAAACTTTTTCCAAACGAGCGAAAGCACCTAAATTTCAT
TACAATTACTTCATTTGCGCCAGTTAGGAGTACAATGTCATTATCACTTA
TCTCATAAAAAGTATACCTTCCGTTTCAATTTAGAGTCCACCATTCCAGA
TGATATGTTTGACACCAAACCAGTCAACATTTCTGACATTTTGACCATGG
ATGTTGATTTGAGTGAACTCTATGTGGATGTTGAGGAACCAGAAGGTGAG
ACCTGCTCCAAAGAAAGTCCTGTCGATATGGCATATACTGTCGAAGAAGA
TATCCCAGAAAACGTGCTCAAGGTAAGGAAAGTGTTACTGTTATGGTTGT
CCCCAACAATTTTGAATACAGTGATTTAAGAAGTGATTGATATCATTGTT
CTTCATAGTACTGTTAACCTGATAGGAAAGTTTCTGTCAATTTTTTATAA
AGGAACCGGTAATTTTTGGCTCAGCCTGAGATTGTTCTTAACTTTCTATT
ATCCCAAACAATAGAGCTATTGTTCTGAGTGCCTAAATCTTAGGCTGGTG
TTCTTATAAAATTGTTTTTATAAAAAAAAGTGTGTATTATTTATCTTTGA
AGATGTCATTCTATATTTGTATTTTTAAAGGTTGAAGAGACGAAGGATTG
GAAGAAGCAACATGAAGGTGATAAGAAATGGTCTACTTTGGATCAATCAG
ATGTCAGCGATTTTCATAAACAAGTTCCTGATATGGCTTTCAAGGT

Coding sequence (CDS) from alignment at scaffold_439:502391..510386-

>TCONS_00065441 ID=TCONS_00065441|Name=TCONS_00065441|organism=Clytia hemisphaerica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_439:502391..510386- (Clytia hemisphaerica)
GTTGAAGAGACGAAGGATTGGAAGAAGCAACATGAAGGTGATAAGAAATG
GTCTACTTTGGATCAATCAGATGTCAGCGATTTTCATAAACAAGTTCCTG
ATATGGCTTTCAAGAGTCCACCATTCCAGATGATATGTTTGACACCAAAC
CAGTCAACATTTCTGACATTTTGACCATGGATGTTGATTTGAGTGAACTC
TATGTGGATGTTGAGGAACCAGAAGGTGAGACCTGCTCCAAAGAAAGTCC
TGTCGATATGGCATATACTGTCGAAGAAGATATCCCAGAAAACGTGCTCA
AGAAAGTCTACTTACACAACCTCCAGGGCTTAGCCTTTCCGTCAATTTTG
AGCTGCCAACGTCAAACTCCAGTGAAGCTAAAGATGAAACTACCATCACT
AGACAAAATGTTGACATTGGAGGATCATGATACTGAAGTTATTGATTTAT
CACCAAGTTGAAGAGACGAAGGATTGGAAGAAGCAACATGAAGGTGATAA
GAAATGGTCTACTTTGGATCAATCAGATGTCAGCGATTTTCATAAACAAG
TTCCTGATATGGCTTTCAAGAGTCCACCATTCCAGATGATATGTTTGACA
CCAAACCAGTCAACATTTCTGACATTTTGACCATGGATGTTGATTTGAGT
GAACTCTATGTGGATGTTGAGGAACCAGAAGGTGAGACCTGCTCCAAAGA
AAGTCCTGTCGATATGGCATATACTGTCGAAGAAGATATCCCAGAAAACG
TGCTCAAGAAAGTCTACTTACACAACCTCCAGGGCTTAGCCTTTCCGTCA
ATTTTGAGCTGCCAACGTCAAACTCCAGTGAAGCTAAAGATGAAACTACC
ATCACTAGACAAAATGTTGACATTGGAGGATCATGATACTGAAGTTATTG
ATTTATCACCAAGTTGAAGAGACGAAGGATTGGAAGAAGCAACATGAAGG
TGATAAGAAATGGTCTACTTTGGATCAATCAGATGTCAGCGATTTTCATA
AACAAGTTCCTGATATGGCTTTCAAGAGTCCACCATTCCAGATGATATGT
TTGACACCAAACCAGTCAACATTTCTGACATTTTGACCATGGATGTTGAT
TTGAGTGAACTCTATGTGGATGTTGAGGAACCAGAAGGTGAGACCTGCTC
CAAAGAAAGTCCTGTCGATATGGCATATACTGTCGAAGAAGATATCCCAG
AAAACGTGCTCAAGAAAGTCTACTTACACAACCTCCAGGGCTTAGCCTTT
CCGTCAATTTTGAGCTGCCAACGTCAAACTCCAGTGAAGCTAAAGATGAA
ACTACCATCACTAGACAAAATGTTGACATTGGAGGATCATGATACTGAAG
TTATTGATTTATCACCAAGTTGAAGAGACGAAGGATTGGAAGAAGCAACA
TGAAGGTGATAAGAAATGGTCTACTTTGGATCAATCAGATGTCAGCGATT
TTCATAAACAAGTTCCTGATATGGCTTTCAAGAGTCCACCATTCCAGATG
ATATGTTTGACACCAAACCAGTCAACATTTCTGACATTTTGACCATGGAT
GTTGATTTGAGTGAACTCTATGTGGATGTTGAGGAACCAGAAGGTGAGAC
CTGCTCCAAAGAAAGTCCTGTCGATATGGCATATACTGTCGAAGAAGATA
TCCCAGAAAACGTGCTCAAGAAAGTCTACTTACACAACCTCCAGGGCTTA
GCCTTTCCGTCAATTTTGAGCTGCCAACGTCAAACTCCAGTGAAGCTAAA
GATGAAACTACCATCACTAGACAAAATGTTGACATTGGAGGATCATGATA
CTGAAGTTATTGATTTATCACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041009XLOC_041009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065441-exon-scaffold_439-1575043694:508325..510386TCONS_00065441-exon-scaffold_439-1575043694:508325..510386Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1575043694:507582..507662TCONS_00065441-exon-scaffold_439-1575043694:507582..507662Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1575043694:506665..507439TCONS_00065441-exon-scaffold_439-1575043694:506665..507439Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1575043694:505300..505406TCONS_00065441-exon-scaffold_439-1575043694:505300..505406Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1575043694:504812..504929TCONS_00065441-exon-scaffold_439-1575043694:504812..504929Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1575043694:504286..504363TCONS_00065441-exon-scaffold_439-1575043694:504286..504363Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1575043694:504005..504085TCONS_00065441-exon-scaffold_439-1575043694:504005..504085Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1575043694:502815..503002TCONS_00065441-exon-scaffold_439-1575043694:502815..503002Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1575043694:502391..502506TCONS_00065441-exon-scaffold_439-1575043694:502391..502506Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1510915933:508325..510386TCONS_00065441-exon-scaffold_439-1510915933:508325..510386Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1510915933:507582..507662TCONS_00065441-exon-scaffold_439-1510915933:507582..507662Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1510915933:506665..507439TCONS_00065441-exon-scaffold_439-1510915933:506665..507439Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1510915933:505300..505406TCONS_00065441-exon-scaffold_439-1510915933:505300..505406Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1510915933:504812..504929TCONS_00065441-exon-scaffold_439-1510915933:504812..504929Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1510915933:504286..504363TCONS_00065441-exon-scaffold_439-1510915933:504286..504363Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1510915933:504005..504085TCONS_00065441-exon-scaffold_439-1510915933:504005..504085Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1510915933:502815..503002TCONS_00065441-exon-scaffold_439-1510915933:502815..503002Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1510915933:502391..502506TCONS_00065441-exon-scaffold_439-1510915933:502391..502506Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1491911889:508325..510386TCONS_00065441-exon-scaffold_439-1491911889:508325..510386Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1491911889:507582..507662TCONS_00065441-exon-scaffold_439-1491911889:507582..507662Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1491911889:506665..507439TCONS_00065441-exon-scaffold_439-1491911889:506665..507439Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1491911889:505300..505406TCONS_00065441-exon-scaffold_439-1491911889:505300..505406Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1491911889:504812..504929TCONS_00065441-exon-scaffold_439-1491911889:504812..504929Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1491911889:504286..504363TCONS_00065441-exon-scaffold_439-1491911889:504286..504363Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1491911889:504005..504085TCONS_00065441-exon-scaffold_439-1491911889:504005..504085Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1491911889:502815..503002TCONS_00065441-exon-scaffold_439-1491911889:502815..503002Clytia hemisphaericaexon
TCONS_00065441-exon-scaffold_439-1491911889:502391..502506TCONS_00065441-exon-scaffold_439-1491911889:502391..502506Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065441-proteinTCONS_00065441-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:502391..510386 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.08986	4.33623	2.28984	1.88745	4.15253	6.62061	0.765246	2.92009	7.35724	3.80947	1.88155	4.62197	2.76972	4.3464	5.69983	5.49703	6.45076	5.7591	1.2294	2.56877	3.68115	2.42534	4.12972	6.09154	3.78039	1.11609	5.63275	3.4829	3.79631	3.70845
Blast
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BLAST of TCONS_00065441 vs. Swiss-Prot (Human)
Match: MED22 (Mediator of RNA polymerase II transcription subunit 22 OS=Homo sapiens GN=MED22 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.728e-43
Identity = 74/123 (60.16%), Postives = 99/123 (80.49%), Query Frame = 2 
Query: 1949 QRATTSQREALLKSYTRRLKDDVKSILDNYTEVIKTAKIEEETQVARLTQSVGDAYEVDVRGANIVRAGESLMKLTADIKEFLILNDYPAVNVCLQKRTQQLRSIEEQTKKKLWELREQVDGD 2317
            QRA    +E LL+SY +RLKDD+KSI+DN+TE+IKTAKIE+ETQV+R TQ   D YE+ VR ANIVRAGESLMKL +D+K+FLILND+P+VN  + +R QQLR+++E+  +KL  LR+++  D
Sbjct:    4 QRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDEISID 126
The following BLAST results are available for this feature:
BLAST of TCONS_00065441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED223.728e-4360.16Mediator of RNA polymerase II transcription subuni... [more]
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