TCONS_00065438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065438
Unique NameTCONS_00065438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065438 ID=TCONS_00065438|Name=TCONS_00065438|organism=Clytia hemisphaerica|type=transcript|length=590bp
CNGGTGGCTGCGCACACATCCGCCGGCAAAACAGTCGTGGCTGAATATGC
AATTGCTTTAGCTCAAAAGCATATGAGAAGaGCTATTTATACCTCGCCAA
TCAAAGCATTATCCAATCAGAAGTTTCGTGATTTCAAAGGGACATTCCCT
GAAGTTGGTTTACTGACTGGTGACGTGCAAATCAAACCAGAATCTGCTTG
CTTGATCATGACTACCGAAATTCTAAGatcGATGTTGTATAACGGTTCGG
ATGTGATTCGAGATGTGGAATGGGTCATATTTGATGAGATCCATTACATT
AATGACGCCGACAGAGGGGTAGTATGGGAAGAAGTGTTGATCATGTTACC
TTCGCATGTTGGTATCATTCTACTATCTGCTACCGTCCCAAATACTCTCG
AATTCGCTGCTTGGATCGGaaaaacaaaacagaaggAGGTGTACGTTGTT
CAAACCAAGAAGCGACCAGTTCCTTTGGAACATTTTCTATTCACCGGGAA
TAGCAATAAAACATCCAATGAACTTTTCTGCATCTTGGACCGGAAAGGTA
AATTCGCTGTTGAAGGGTACAGAGCAGCGCTTCAAGCCAA
Run BLAST on NCBI

transcript from alignment at scaffold_439:499978..501889-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065438 ID=TCONS_00065438|Name=TCONS_00065438|organism=Clytia hemisphaerica|type=transcript|length=1912bp|location=Sequence derived from alignment at scaffold_439:499978..501889- (Clytia hemisphaerica)
CNGGTGGCTGCGCACACATCCGCCGGCAAAACAGTCGTGGCTGAATATGC
AATTGCTTTAGCTCAAAAGCATATGAGAAGGTACCTTCAACATTTTATTG
TTAGACTTGTCGATCGGGAAAATCTAATTATTTTGATGNGCAAATTTTAT
TTTTCCAGAGCTATTTATACCTCGCCAATCAAAGCATTATCCAATCAGAA
GTTTCGTGATTTCAAAGGGACATTCCCTGAAGTTGGTTTACTGACTGGTG
ACGTGCAAATCAAACCAGAATCTGCTTGCTTGATCATGACTACCGAAATT
CTAAGGTATTTGTTTTAAAAGATGGTTGGACACTAGACTGGACACTCAAA
TTTGAAATGATCGATAATTCTTTAGCTTAGGAAATCCAAAAAGAAGCATT
TATGTTTCAAGAAGGCGTCGTATTTCAGTTAGAATTAAAAGGAAGTGTTG
GTTTAATATTTCGAATATACACAAAAAGAACAACTACTCGGAACCAGTTT
TTACAAGTTTTAATGATTCGAATTTGTTACTTTCAACCAATCAGTTGTTG
TAATAGTGACGTAATGTCAGATTGGCTGGTTTGATTATAAACGCCTTTAT
TCGCTTGTTGTTGTATTTCTTTGTTTTTAGATCGATGTTGTATAACGGTT
CGGATGTGATTCGAGATGTGGAATGGGTCATATTTGATGAGATCCATTAC
ATTAATGACGCCGACGTAAGATAAAACACTCAGAAACCGAGAACCTTCGC
CTAGTTAAATCAACCAAAAACTTTGTCAACCAAACAACAACATTATAATA
CCTTTTTTTCAATTGTGAAGTACACGTTTTGTTTATAAGCAAGTGTCTGC
CCCTATATCAGGCTCACATTAGCATTCTATTGTTCTTAAACAATAGAGTC
ATTGCTTAGGTACCAAAAACTGAGCCTGCATATGCTTCTAAACGTTATGC
TTATAAAAGAAAAAACATGTAGCGTTGACTTTCATTAGCCTTGTTGCAAG
CTTTCCGTCAACATGAAATAAAATATCACATCCATACATACATTTACAAA
TCGTATAATTTTGATATTTCTATTTGTTTATAGAGAGGGGTAGTATGGGA
AGAAGTGTTGATCATGTTACCTTCGCATGTTGGTATCATTCTACTATCTG
CTACCGTCCCAAATACTCTCGAATTCGCTGCTTGGATCGGGTAAGTTAAA
TACGTTAACATAAAAGGTTTTATTTTTACATAAGTGTTCCCGTTTCATAT
CAGACACATATTTCATACCAGGACAGTGTTTATCTATTGTTTTATTATGG
TGATATAAGCAAAAATTATTGTTCTTTTCCTTTTTCTGACCAATCTTGCT
CCACATCCGTGTCAGTTCAATGTGAAAAAGCTTGTGTAAAATTGATGAGT
AAGCAAACGATATCACTCTTATTTAAAAACAAAACCTTCAGGCCTTGCTC
TTTCGAGGAAAATCTTAAATTTGTGATCAATTTTTAGCGCACTGGACCTA
CGTGATTATGTTAGAATTATTATAACGACAAACTTTTCTCACGCTTGAGA
GCTACTCAATCTTTTCCGGGCGACAAGAGTTGAAACAAAATAATTCCTAT
CATTTACTGCAGTGATGACTTAAAAATCGCCTGTCGAAGTAAAGTTTTGA
TTCAAACGTGGTGTATGATTTTGCTTTTCCAAAGAAGAAAAAAATAAATA
CTTTTCTATTATAAGAAATCTGCGATCGTTCTCTTTCTTAGAAAAACAAA
ACAGAAGGAGGTGTACGTTGTTCAAACCAAGAAGCGACCAGTTCCTTTGG
AACATTTTCTATTCACCGGGAATAGCAATAAAACATCCAATGAACTTTTC
TGCATCTTGGACCGGAAAGGTAAATTCGCTGTTGAAGGGTACAGAGCAGC
GCTTCAAGCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041008XLOC_041008Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065438-exon-scaffold_439-1575043694:501810..501889TCONS_00065438-exon-scaffold_439-1575043694:501810..501889Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1575043694:501585..501731TCONS_00065438-exon-scaffold_439-1575043694:501585..501731Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1575043694:501175..501259TCONS_00065438-exon-scaffold_439-1575043694:501175..501259Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1575043694:500700..500806TCONS_00065438-exon-scaffold_439-1575043694:500700..500806Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1575043694:499978..500148TCONS_00065438-exon-scaffold_439-1575043694:499978..500148Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1510915933:501810..501889TCONS_00065438-exon-scaffold_439-1510915933:501810..501889Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1510915933:501585..501731TCONS_00065438-exon-scaffold_439-1510915933:501585..501731Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1510915933:501175..501259TCONS_00065438-exon-scaffold_439-1510915933:501175..501259Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1510915933:500700..500806TCONS_00065438-exon-scaffold_439-1510915933:500700..500806Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1510915933:499978..500148TCONS_00065438-exon-scaffold_439-1510915933:499978..500148Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1491911889:501810..501889TCONS_00065438-exon-scaffold_439-1491911889:501810..501889Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1491911889:501585..501731TCONS_00065438-exon-scaffold_439-1491911889:501585..501731Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1491911889:501175..501259TCONS_00065438-exon-scaffold_439-1491911889:501175..501259Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1491911889:500700..500806TCONS_00065438-exon-scaffold_439-1491911889:500700..500806Clytia hemisphaericaexon
TCONS_00065438-exon-scaffold_439-1491911889:499978..500148TCONS_00065438-exon-scaffold_439-1491911889:499978..500148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:499978..501889 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.86242	1.81464	0.0730213	1.18723	1.51889	1.51878	2.69624	1.62956	3.47323	3.42473	0	2.15507	2.73981	1.44376e-06	0.96229	1.06937	2.1083	0.785074	0.343439	3.05681	1.88468	0	1.04123e-07	6.10942	6.768	1.41304	0	0	1.21132
Blast
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BLAST of TCONS_00065438 vs. Swiss-Prot (Human)
Match: SKIV2 (Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3)

HSP 1 Score: 327.405 bits (838), Expect = 6.322e-104
Identity = 151/195 (77.44%), Postives = 173/195 (88.72%), Query Frame = 1 
Query:    4 VAAHTSAGKTVVAEYAIALAQKHMRRAIYTSPIKALSNQKFRDFKGTFPEVGLLTGDVQIKPESACLIMTTEILRSMLYNGSDVIRDVEWVIFDEIHYINDADRGVVWEEVLIMLPSHVGIILLSATVPNTLEFAAWIGKTKQKEVYVVQTKKRPVPLEHFLFTGNSNKTSNELFCILDRKGKFAVEGYRAALQA 588
            VAAHTSAGKTVVAEYAIALAQKHM R IYTSPIKALSNQKFRDF+ TF +VGLLTGDVQ+ PE++CLIMTTEILRSMLY+GSDVIRD+EWVIFDE+HYIND +RGVVWEEVLIMLP HV IILLSATVPN LEFA WIG+ K++++YV+ T  RPVPLEH+LFTGNS+KT  ELF +LD +G F  +GY AA++A
Sbjct:  330 VAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEA 524
The following BLAST results are available for this feature:
BLAST of TCONS_00065438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SKIV26.322e-10477.44Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3[more]
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