|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065434 ID=TCONS_00065434|Name=TCONS_00065434|organism=Clytia hemisphaerica|type=transcript|length=3666bp
ggTACAAACATTAGCTTATAAAGAAGAGGTTATCATAGAATTGGTTAAAA
GACATGGACAACTTCGATCAAAGTTTCAGGCGGAAGAGAAATATCTCCAG
GAAACATTGTCGACAAAAGAAAGACACTTGAATGAAATTATACTGAAAAT
ACGATACGAGTCAGATATGAAACAACGTGAATTGTTCGATGCGTGGGATA
AAAACGGATATTTAGTTCAATCACTCAAGAAACGAGATCAACAATTGCTT
CTTGAGGTCCAAGCTCGGGAAAACTTAGAGCAAAGCTTAGACGCGACACA
AAAAGATTTCAGACGATCTCAAGAAGATCTTGAACGTGCATTGAACTCTT
TGAACGAAACCGAGAACAAGTGTAAGAAGCTGGAAGATGAAAAGAAGTAC
TTGATGGAGGAACGTGATATCAGTATTAACTTTGACGAGTGGGGAGCATC
AAAGACTAACTTTGCCAATTACACAAAATCGCACGAAAATATGTTCCTTG
ATATTAAAAACTCCATTGACACACCTCCCGCCAGCAAATCATTTGCCAAT
ACATACTTAGAACTACGTCAATCCAACAACGTAAAAAATAAGCAGGCTTT
AGTACCAGTCGAACCGACAATTCTGCCACTTAAAGTACCTCTTGTTGAac
gtggcaaaacgatggaagAATTCTTGGCAAAGAATTCTTTTGATAGATTG
GATGACTGTTCAAAGGATGTTCCTATGGATAGTATAGAGAGACTTAATTG
CAAGATTGTTGAAAAACCGACAACCAAAACAATGGTCGAAAACAGTCTTT
CAACAAAGGAAAGAATCTTAGTTAAGGAATCGTCTACAAAGACATTAAAA
GATAATCCTGTAATGGAAAACATGGCTACCACGAGAACCAACTCATATTT
GCAAGAGCCAACAAAAAAAGCAGCTAGAAGTCCGAGTGAGCCGACCATTC
TCCCACTGAACATTTCTAACTCTACAAACAGCAAACCGACTGATCTACTA
TCTTTAGATAACAGTTCTAGCGTCCCAAACCCTAATGATAGTTTGGTGTC
CTCAACCTCAAGCACTAGCAACCCATCAAAGGTAACCAAAAGCAGAATTG
GTATTAGAGAACCAACCGAACCAACCATTTTGCCTTTGAACTTGTCAGTA
TGTCAACATAATTCACAAGAGAGCCTTGTGACTTTACAAAAGAACATAAC
CTGTCAAGACAATGTAAAGAACCTATCACTTAAACCAAGCTTGGATTCGA
ATCTCGATGAGGATTGTTATGTAGCTCCCAAATCAAGTTTCGTTACTACT
CTTTGTAAAGAGTCACGCAAAACGAACATTAAAAGTAAACAAATGGTTTT
GACTCCGAAGGAGCCAGTTATCAAGCCTTTAAATATTACTCCTTCGAAAA
GTTATCAAAATCATCAAGATGTTCTATATGAAGCCGATTGTCACGTAACT
CCAAAAATAAGTTTCAACTCCACTGTTACCGATAAGCAATTCAAGTCACc
gagcaaaaacaaaaatattgttttaGCACCAACCGAGCCAGTTATTATGC
CATTGAATATCAAATGCAATAGACCACAACCAAAAGTTCAGCGCCCAATA
AATTGTCATCAGCCTCCAAAGTCGAGAAGTTTTGACTTCATACTTTCATT
AGAACCACTTAAGGTACAGAGGAAAATTAAGAAGTTAGTTCTTACACCAA
GCGAGCCCATCATTTACCCTCTGAACATATGTCGCTCAGCAACAAGTTCA
AAAGTAAAACCAGGATTGAAGATTCCTTCCAGCGAATCTAGTGATAATGA
CAAGGACAGTAATTCTGATAACTCGCTTGATAAGACAATTGAAACCAATA
TGCTCAACATCAGATTTGATGGCGCGTTCAATGGAAAGTCTTCCATCGTT
GAAACAACTAACAATAACTCTTACGACAACATGGATGTAGATATGATAAT
TTCGACTGAATGCTCAAACAAGAACAGAGAACCCAATATGGAGCTTgtca
aatttgaaaagaaatctttGCTGACCAGAATCACCAACAAAGTTATTCAA
ACATTTATATGTCTTTTGTTCTGTCCCTTTCAAATTATATACGACATTAT
GAGAATTACGGAACAAGTATTTTTTAAAGGGTTCAATGACTCTGAAACAC
AAAAAAAGGCAGCTAAAAGTCCGAGTGAGCCGACCATTCTCCCACTGAAC
ATTTCTAACTCTGCAAACAGCAAACCGACTGATCTACTAGCGTTAGATGA
CAGTTCTAGCGCCCCAAGCCCTAGTGATGGTTTGGTGTCTGCAACCCCAA
GCACTAGCATTTCAACAAAGTTAACCAAAAGCAGAGTTGGTATTAGAGAA
CCAAGCGAACCAACCATTTTACCTTTGAACTTCCCTGTATGTCAATATAA
TTCACAAGATAGCCTTGTGACTTTACAAAAGAACATAACCTGTCAAGATA
ATGTAAAGAACCTATCACCTAAACCAAGCTTGGATTCGAATCTCGATGAG
GATTGTTATGTAGCTCCCAAATCAAGTTTCGTTACTACTCTTTGTAAAGA
GTCACGCAAAACGAACATTAAAAGTAAACAAATGGTTTTGACTCTGAAGG
AGCCAGTTATCAAGCCTTTAAATATTACTCCTTCGAAAAGTTATCGGAAA
CATCAAGATGTTCTATATGAAGCCGATTGTCACATAACTCCAAAAACAAG
TTTCAACTCCACTGTTACCGATAAGCAATTCAAGTCACcgagcaaaaaca
aaaatattgttttaGCACCAACCGAGCCAGTTATTATGCCATTGAATATC
AAATGCAATAGACCACAACCAAAAGTTCAGCGCCCAATAAATTGTCATCA
ACCTCCAAAGTCGAGAAGCTTTGACTCCATACTTTCATTAGAACCACTTA
AGGTACAGAGGAAAAATAAGAAGTTAGTTCTTACACCAAGCGAGCCCATC
ATTTACCCTCTGAACATATGTCGCTCAGCAACAAGTTCAAAAGTAAAACC
AGGATTGAAGATTCCTTCCAGCGAATCTAGTGATAATGACAAGGACAGTA
ATTCTGATAACTCGCTTGATAAGACAATTGAAACCAATATGCTCAACATC
AGATTTGATGGCGCGTTCAATGGAAAGTCTTCCATCGTTGAAACAACTAA
CAACAACTCTTACGACAACATGGATGTAGATATGATAATTTCGACTGAAT
GCTCAAACAAGAACAGAGAACCCAATATGGAGCTTGTCAAATTCGAAAAG
AAATCTTTGCTGACCAGAATCACCAACAAAGTTATTCAAACATTTATATG
TCTTTTGTTCTGTCCCTTTCAAATTATATACGACATTATGAGAATTACGG
AACAAGTATTTTTTAAAGGGTTCAATGACTCTGAAACACAAATCAAAGTT
GGTGACAGTGATGGGAAACGCAATGGTATGATGGAGATAATATGGAGTGA
TATACCCACCAACCAGTCGAAAGTTTCTACTACTTCTTCAACAAACCTCA
CGAACCGTGATTCAAATCACAAAGATGCAGACAAATCCAACACAACAACA
CAGTATTAAGAAATACAGATGAATCGATTGCTACATGACACTAAAAAAAG
ATgactaatttattttttaattgattaactaatttatatacttttataat
aaaaaataatttaaaa Run BLAST on NCBI transcript from alignment at scaffold_439:431656..437595- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065434 ID=TCONS_00065434|Name=TCONS_00065434|organism=Clytia hemisphaerica|type=transcript|length=5940bp|location=Sequence derived from alignment at scaffold_439:431656..437595- (Clytia hemisphaerica)
GGTACAAACATTAGCTTATAAAGAAGAGGTTATCATAGAATTGGTTAAAA
GACATGGACAACTTCGATCAAAGTTTCAGGCGGAAGAGAAATATCTTCAG
GAAACATTGACAACAAAAGAAAGACACTTGAATGAAATTATTATGAAAGT
ACGATACGAGTCAGATATGAAACAACGTGAATTGTTCGATGCGAGGGATA
AAAACGGATATTTAGTTCAATCACTCAAGAAACGAGATCAGCAATTGCTT
CTTGAGGTAAGGGATTTCCAAAGTCACTCCAAATCTCTTTTATTTGGTAG
AAATGTTTTGGTTCCTACAACTCAAGTACTCGTAGGTTCCANCTGTAAGC
CTCGATGATATGTCTTTTTAAGATAACGGAAGTTTGTGTTCAATGAAATA
CCATAGTGACCCTGTTAAAATTATCGAGGGTACCTGTCGTTGCAGACGCC
CAAAGGTGTCTGAAGTGGTGAGAGGGTTTNGCCCTTCTAATTAAATTAGC
GTATTAAATTTTTCTTAAAGATATAAATTTGGAAAACTTTATGCTCATCT
AAAATAATCGGGGTAGTCCTCCGGCTTGAACAAACTGTATTAGGATTCTA
GCCGTGCTGTAAACAAAAACGTTTACACTCAAATACACGTTTCTTCAGGT
TTCTTAATAAGAACAAACTATACAAGAACATAAGGTTTCGATGGCTAAAA
TATTAGGGACATTCGAAGGCTTCAAAAATTTTGGGTGTTCTTATAAAGAA
AAACGTGTACGAAAATGGTCTAGTCTAGGGACGATTAGGCATTAAAATAC
AAATAATTACACGTTTTTTTTTCTCATAGGACCCGATGACTCTATGCGAC
GAGCTCAAAAACATTCAAAGTCAATTCAAAATAAATCAGAGCAAAATTAT
TTCTTTCATCACCGAACCAACCCTCACTAAGAAGCTGTCACATGACAGTG
GTGTCATCTTGAATCACTTTCAAAGTCTGGGATCAAATTTTTCGGCTAGA
TGTGGAAAGTCAAAATCGGAGATTCTATTACGAAAAGTAAGCACCGGTAA
TTCAGTTGAAAATGTACGGAAAACTATGAATAGTCAGAAAGATAACTTTA
TACAAGATGTGAAGCCCGATGGAAGTCATAATAGTGGAGTTATTCCTACA
CCACCATTTTTATCAATCAATTCACCAAAGAAACATATGGAAACTGTAAA
GAAAATTACATTCTTGGAGGAGAACAATGGTCCAGTATTGAAGAAAACTT
CGGTAGAGAACGTCACAGGTTCGATAACAGCAATTGCCAATGTTTCGCCC
AAAAAAAATGTTGATACATCGTTTACTAAGAATGTTGATGTTGTATCGGA
GGACAATCTAGAAAGAAGCGAACCATCCACAGGTGCAGGTGAAATTTCAA
TTCGAGAAGATGCCTCAAAGGAAGATTGTAGACAAAATACAAAATCGCTT
GTTGAAATCAGAACAAATGATTTGAATAGAATTCCTACGCAGCTCTCAAC
TAGAATCACGACTGATGACAGAACCTTGGTCAAAGCAATTGAATCCTTAA
AAATCAAGCTTGCACAAAGCGAAATAAAGTGTCAACAACATGAATTGAAA
ATGGCTTCATTTTCACAAACATTAGCTTATAAAGAAGAGGTTATCATAGA
ATTGGTTAAAAGACATGGACTACTTCGATCAAAGTTCCAGGCGGAAGAGA
AATATCTCCAGGAAACATTGTCGACAAAAGAAAGACACTTGAATGAAATT
ATACTGAAAATACGATACGAGTCAGATATGAAACAACGTGAATTGTTCGA
TGCGTGGGATAAAAACGGATATTTAGTTCAATCACTCAAGAAACGAGATC
AACAATTGCTTCTTGAGGTAAGGGATTTCCCAAGTCTCTCCAAATTTCTT
TTATTTGGTAGAAAAGTTTTGGTTCCTGCAACTCAAGTACTCGTAGGTAC
CAAATAAACGCCTCCCCCCCGCTTGTCAATTTTTCGAAAATTTTCCAAAC
CCTCCGGACGTTATTAGGACTCCCCCTCCCGTTTATTATTTTTTTTCAAC
TTTTAAAAAGAAGGTCCCTCATTCTGCTCTAAATTGCCTGATTTTAGCCT
ATATTTACCTTATTTTTGGGTTTTCGTAAATACAATTTCCAACCCCCCCG
GCAATTAGGTCCCCCCGTTTATTAAAATTTTGAAAATTTTCCAACCCCCC
CTGTTTATTCGATCCCCCCTCCCGTTTATTTGGAACCTACGAGTAAAATA
TAACTCAAACACCGATCAAAATCAACATCTTTATGGTTCTTCGTTTGTTT
TAGGTCCAAGCTCGGGAAAACTTAGAGCAAAGCTTAGACGCGACACAAAA
AGATTTCAGACGATCTCAAGAAGATCTTGAACGTGCATTGAACTCTTTGA
ACGAAACCGAGAACAAGTGTAAGAAGCTGGAAGATGAAAAGAAGTACTTG
ATGGAGGAACGTGATATCAGGTAAGCAAAAATCTGCTCCATAATATACGC
TGAATATTTTTCCTATTATTATGGTAATTTAACGTGAACATTTTTTCCGG
ATGATGAAAATTGATTGCGCTCCCATAATAACGGCTTCCCATTTGTGAGA
AACATAAACTCCAAAATTTTAGACCAAAAGAAAGTCTTTTCTTATTCATA
ATTAAAGAGCTGCAACTAAAACATTTCTTCACTATTTCTAATTGCAGTAT
TAACTTTGACGAGTGGGGAGCATCAAAGACTAACTTTGCCAATTACACAA
AATCGCACGAAAATATGTTCCTTGATATTAAAAACTCCATTGACACACCT
CCCGCCAGCAAATCATTTGCCAATACATACTTAGAACTACGTCAATCCAA
CAACGTAAAAAATAAGCAGGCTTTAGTACCAGTCGAACCGACAATTCTGC
CACTTAAAGTACCTCTTGTTGAACGTGGCAAAACGATGGAAGAATTCTTG
GCAAAGAATTCTTTTGATAGATTGGATGACTGTTCAAAGGATGTTCCTAT
GGATAGTATAGAGAGACTTAATTGCAAGATTGTTGAAAAACCGACAACCA
AAACAATGGTCGAAAACAGTCTTTCAACAAAGGAAAGAATCTTAGTTAAG
GAATCGTCTACAAAGACATTAAAAGATAATCCTGTAATGGAAAACATGGC
TACCACGAGAACCAACTCATATTTGCAAGAGCCAACAAAAAAAGCAGCTA
GAAGTCCGAGTGAGCCGACCATTCTCCCACTGAACATTTCTAACTCTACA
AACAGCAAACCGACTGATCTACTATCTTTAGATAACAGTTCTAGCGTCCC
AAACCCTAATGATAGTTTGGTGTCCTCAACCTCAAGCACTAGCAACCCAT
CAAAGGTAACCAAAAGCAGAATTGGTATTAGAGAACCAACCGAACCAACC
ATTTTGCCTTTGAACTTGTCAGTATGTCAACATAATTCACAAGAGAGCCT
TGTGACTTTACAAAAGAACATAACCTGTCAAGACAATGTAAAGAACCTAT
CACTTAAACCAAGCTTGGATTCGAATCTCGATGAGGATTGTTATGTAGCT
CCCAAATCAAGTTTCGTTACTACTCTTTGTAAAGAGTCACGCAAAACGAA
CATTAAAAGTAAACAAATGGTTTTGACTCCGAAGGAGCCAGTTATCAAGC
CTTTAAATATTACTCCTTCGAAAAGTTATCAAAATCATCAAGATGTTCTA
TATGAAGCCGATTGTCACGTAACTCCAAAAATAAGTTTCAACTCCACTGT
TACCGATAAGCAATTCAAGTCACCGAGCAAAAACAAAAATATTGTTTTAG
CACCAACCGAGCCAGTTATTATGCCATTGAATATCAAATGCAATAGACCA
CAACCAAAAGTTCAGCGCCCAATAAATTGTCATCAGCCTCCAAAGTCGAG
AAGTTTTGACTTCATACTTTCATTAGAACCACTTAAGGTACAGAGGAAAA
TTAAGAAGTTAGTTCTTACACCAAGCGAGCCCATCATTTACCCTCTGAAC
ATATGTCGCTCAGCAACAAGTTCAAAAGTAAAACCAGGATTGAAGATTCC
TTCCAGCGAATCTAGTGATAATGACAAGGACAGTAATTCTGATAACTCGC
TTGATAAGACAATTGAAACCAATATGCTCAACATCAGATTTGATGGCGCG
TTCAATGGAAAGTCTTCCATCGTTGAAACAACTAACAATAACTCTTACGA
CAACATGGATGTAGATATGATAATTTCGACTGAATGCTCAAACAAGAACA
GAGAACCCAATATGGAGCTTGTCAAATTTGAAAAGAAATCTTTGCTGACC
AGAATCACCAACAAAGTTATTCAAACATTTATATGTCTTTTGTTCTGTCC
CTTTCAAATTATATACGACATTATGAGAATTACGGAACAAGTATTTTTTA
AAGGGTTCAATGACTCTGAAACACAAAAAAAGGCAGCTAAAAGTCCGAGT
GAGCCGACCATTCTCCCACTGAACATTTCTAACTCTGCAAACAGCAAACC
GACTGATCTACTAGCGTTAGATGACAGTTCTAGCGCCCCAAGCCCTAGTG
ATGGTTTGGTGTCTGCAACCCCAAGCACTAGCATTTCAACAAAGTTAACC
AAAAGCAGAGTTGGTATTAGAGAACCAAGCGAACCAACCATTTTACCTTT
GAACTTCCCTGTATGTCAATATAATTCACAAGATAGCCTTGTGACTTTAC
AAAAGAACATAACCTGTCAAGATAATGTAAAGAACCTATCACCTAAACCA
AGCTTGGATTCGAATCTCGATGAGGATTGTTATGTAGCTCCCAAATCAAG
TTTCGTTACTACTCTTTGTAAAGAGTCACGCAAAACGAACATTAAAAGTA
AACAAATGGTTTTGACTCTGAAGGAGCCAGTTATCAAGCCTTTAAATATT
ACTCCTTCGAAAAGTTATCGGAAACATCAAGATGTTCTATATGAAGCCGA
TTGTCACATAACTCCAAAAACAAGTTTCAACTCCACTGTTACCGATAAGC
AATTCAAGTCACCGAGCAAAAACAAAAATATTGTTTTAGCACCAACCGAG
CCAGTTATTATGCCATTGAATATCAAATGCAATAGACCACAACCAAAAGT
TCAGCGCCCAATAAATTGTCATCAACCTCCAAAGTCGAGAAGCTTTGACT
CCATACTTTCATTAGAACCACTTAAGGTACAGAGGAAAAATAAGAAGTTA
GTTCTTACACCAAGCGAGCCCATCATTTACCCTCTGAACATATGTCGCTC
AGCAACAAGTTCAAAAGTAAAACCAGGATTGAAGATTCCTTCCAGCGAAT
CTAGTGATAATGACAAGGACAGTAATTCTGATAACTCGCTTGATAAGACA
ATTGAAACCAATATGCTCAACATCAGATTTGATGGCGCGTTCAATGGAAA
GTCTTCCATCGTTGAAACAACTAACAACAACTCTTACGACAACATGGATG
TAGATATGATAATTTCGACTGAATGCTCAAACAAGAACAGAGAACCCAAT
ATGGAGCTTGTCAAATTCGAAAAGAAATCTTTGCTGACCAGAATCACCAA
CAAAGTTATTCAAACATTTATATGTCTTTTGTTCTGTCCCTTTCAAATTA
TATACGACATTATGAGAATTACGGAACAAGTATTTTTTAAAGGGTTCAAT
GACTCTGAAACACAAATCAAAGTTGGTGACAGTGATGGGAAACGCAATGG
TATGATGGAGATAATATGGAGTGATATACCCACCAACCAGTCGAAAGTTT
CTACTACTTCTTCAACAAACCTCACGAACCGTGATTCAAATCACAAAGAT
GCAGACAAATCCAACACAACAACACAGTATTAAGAAATACAGATGAATCG
ATTGCTACATGACACTAAAAAAAGATGACTAATTTATTTTTTAATTGATT
AACTAATTTATATACTTTTATAATAAAAAATAATTTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065434-exon-scaffold_439-1575043694:437517..437595 | TCONS_00065434-exon-scaffold_439-1575043694:437517..437595 | Clytia hemisphaerica | exon |
| TCONS_00065434-exon-scaffold_439-1575043694:435729..435905 | TCONS_00065434-exon-scaffold_439-1575043694:435729..435905 | Clytia hemisphaerica | exon |
| TCONS_00065434-exon-scaffold_439-1575043694:435126..435292 | TCONS_00065434-exon-scaffold_439-1575043694:435126..435292 | Clytia hemisphaerica | exon |
| TCONS_00065434-exon-scaffold_439-1575043694:431656..434898 | TCONS_00065434-exon-scaffold_439-1575043694:431656..434898 | Clytia hemisphaerica | exon |
| TCONS_00065434-exon-scaffold_439-1510915933:437517..437595 | TCONS_00065434-exon-scaffold_439-1510915933:437517..437595 | Clytia hemisphaerica | exon |
| TCONS_00065434-exon-scaffold_439-1510915933:435729..435905 | TCONS_00065434-exon-scaffold_439-1510915933:435729..435905 | Clytia hemisphaerica | exon |
| TCONS_00065434-exon-scaffold_439-1510915933:435126..435292 | TCONS_00065434-exon-scaffold_439-1510915933:435126..435292 | Clytia hemisphaerica | exon |
| TCONS_00065434-exon-scaffold_439-1510915933:431656..434898 | TCONS_00065434-exon-scaffold_439-1510915933:431656..434898 | Clytia hemisphaerica | exon |
| TCONS_00065434-exon-scaffold_439-1491911889:437517..437595 | TCONS_00065434-exon-scaffold_439-1491911889:437517..437595 | Clytia hemisphaerica | exon |
| TCONS_00065434-exon-scaffold_439-1491911889:435729..435905 | TCONS_00065434-exon-scaffold_439-1491911889:435729..435905 | Clytia hemisphaerica | exon |
| TCONS_00065434-exon-scaffold_439-1491911889:435126..435292 | TCONS_00065434-exon-scaffold_439-1491911889:435126..435292 | Clytia hemisphaerica | exon |
| TCONS_00065434-exon-scaffold_439-1491911889:431656..434898 | TCONS_00065434-exon-scaffold_439-1491911889:431656..434898 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:431656..437595 - |
Blast
The following BLAST results are available for this feature:
|
