TCONS_00065430 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065430
Unique NameTCONS_00065430
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length994

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065430 ID=TCONS_00065430|Name=TCONS_00065430|organism=Clytia hemisphaerica|type=transcript|length=994bp
TGGCtatcgaaatcaaaacaaaagcacgtgctttctgttttttctttttt
ggaatcCAATCCAGAAATCCGCGTGACTGAGAATTAAACTTAAACCAGAA
CAAAAGGACTAATGTTATGGCTCCTGCTAGAAAGAAACGAAGGACTACTG
ATAACATTGTCAAGGATGAAAACTTGGATAAAGTTTCAAAAGACTGTAAG
AAGATCATGGTTTATCAATATGAAGTCTATGACATTTGTTTACCAGGAAC
CAGCGGCTGAAAATAATGAACAGAAATTTTGGTTGATGAAGTCAGAGCCA
GAGACAAGAATTGAAAAAGGAGTTGATGTCAAGTTTGGCATTGAAGATCT
TAAAAAGGAGCCAAAACAAACTGCCTGCTGGGATGGTGTCAGAAATTATC
AAGCACGTAACTTTATGAGAGATCAAATGAAAGTTGGTAACAAAGCATTC
TTCTATCACAGTAATTGTAAAGTCCCGGGCATCGCTGGAATTATGACAAT
CGTAAAAGAAAGCTACCCTGATCATACACAGTTTGATTCTAAAGATGTAC
ATTTTGatccaaaatcacaaaaagaaaatccaaaatggtTTATGGTGGAT
GTCAAGTATGAGCGAATGATGAAAAGATATATTGGTCTCCCAGAACTTAA
AAAACTTCATTCAGAACACAAGTCTTCCCATGGTCCTTTGAAATCCGTCG
CTTTGTTTACAAGAGCTCGCCTTTCGGTGCAACCATTAACCAAAGAAGAA
TATGATTACATTTTGACTCTGGAAGAAGTTGAAGAACCGTAATCTTTGAC
ACCATTATAGACGCTAAActtttatacattttctgtttatattgtaaata
ttttgggaaataaaaatcctttttctttttacttttgaagTTGGGTCCAA
ATTGTCTATTGAAATcctaaaatcaatcaattaattaGTAAACGCAAGGT
TGTGCAGACTTAATATCTTTTTTGTTATTCCACCTAAAGGCCAA
Run BLAST on NCBI

protein sequence of thymocyte nuclear protein

>TCONS_00065430-protein ID=TCONS_00065430-protein|Name=thymocyte nuclear protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MLWLLLERNEGLLITLSRMKTWIKFQKTVRRSWFINMKSMTFVYQEPAAE
NNEQKFWLMKSEPETRIEKGVDVKFGIEDLKKEPKQTACWDGVRNYQARN
FMRDQMKVGNKAFFYHSNCKVPGIAGIMTIVKESYPDHTQFDSKDVHFDP
KSQKENPKWFMVDVKYERMMKRYIGLPELKKLHSEHKSSHGPLKSVALFT
RARLSVQPLTKEEYDYILTLEEVEEP
Run BLAST on NCBI

transcript from alignment at scaffold_439:421158..426160-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065430 ID=TCONS_00065430|Name=TCONS_00065430|organism=Clytia hemisphaerica|type=transcript|length=5003bp|location=Sequence derived from alignment at scaffold_439:421158..426160- (Clytia hemisphaerica)
TGGCTATCGAAATCAAAACAAAAGCACGTGCTTTCTGTTTTTTCTTTTTT
GGAATCCAATCCAGAAATCCGCGTGACTGAGAATTAAACTTAAACCAGAA
CAAAAGGACTAATGTTATGGCTCCTGCTAGAAAGAAACGAAGGACTACTG
ATAACATTGTCAAGGATGAAAACTTGGATAAAGTTTCAAAAGACTGTAAG
AAGGTAATGATATGATATGATATTTCTTCTAATAAGTCTCAATAAAATGT
CTATGAACACAAGTTAACCCTTCCGGGTTTTCGTTATATATGTCTGTATA
TGTATGTGTATAATACGTGAGTATACACATTGCTCGATGCACTATTCATC
CAGTGGTGAGTATTGAGAGGCTTCTGATTGGTTCATGAGTCAGTGGAAAC
CCCTAAAACTGTAAAACAAGTAATCGAATTTTGAGCCATGAAATATAGTT
GGTTTACAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAGGAACTTTGAGACTGAAATTCTCTGTAAAAATAAGGAACTCCAGGCTC
AGAGCAAAGTTAAGGTTCCTTATAAAAAAAAAACGTGTATCTTTTTTACA
AAAACAAATTGTAAGATGTTTTGATAAATTTCCAGAGGCTTTCATGAAAT
TTGGAAAATCTTTAAATGATGGGTGTTCCAAAAAGGTAGGGTACCCCAAT
TGGGGCTCTATTCGTCTATTGATTGTTTATGAGTGTTAAATCTTTTAGAA
TTAAATGGAAAATTCGTGTAAAAATTGTTTATCCATTTTAATCAGGGTTC
AGACAGACCCTGGAAAACCTGGAAATATGATAAATTTTCAGAAAAATCAG
GGAAACTCAGGGAAACCCAGGGAAAAAAAACTTTTTCCCAGTCTGCTCAG
GGAAACTCAGGGAATTTTATTTTTTGAAGAATGAATGGAAAAAACANTTT
TCCCAGTCTGCTCAGGGAAACTCAGGGAATTTTATTTTTTGAAGAATGAA
TGGAAAAAAACAGATTTAAAAGTTTTTTTAGTTTTAAGGCAATTACTTTT
TTATTTTCTGGTTTACGGAATCGCCAACGTTTTTTTTGCAGAAATAAAAT
AAAAATAAAATTGAAATTCATAGAAATTTTATTTATTTTTGCACTTCCGA
TTCTGTTTAATCTGCCATGAAATGGATTTTATTTAGAAAACTTCATTTTA
TAAGAGCAGGAAAGGAAGATAAAAGGGAAAAAAAAAGAAATACAGTATTT
CTAGGCTAGAAATTTTTTTTAATGTACGTTGTCTGACAGGGGTAATGAAA
ATTTTCTGGAATGGCCCATTCAATTCCATTTGGGGATATCATTTTTTTTT
CTTCTTAATATTTAATTTTGACCTTTGTAAATTTAAATGATTGCAGTTTT
ATGCCTGGGAATTGTCAAGTTTTCAATGACTTCAGACAAAATCTACATAC
ATCACAAAATAGTTGTTTTGGAAAACGCAATGGTCTATTGAATAACAAAT
TACTCCACATACATTACTTTCCCTCAGCCAATAAAAATGTGATAAATTAT
CTTGTCTCTAGGTAACTGTTGTGGAGTAATTAGTTATTCAATAGGCCGTC
GCGTTCTCCAAAACAACTATATCATATTGTCAACTGCTCTAACTTGGGAC
AATTGGTCAAAACATGGGACTGTTGGATATCTGGTCTGTATTTTCACTTA
CAAATAGCGATTAAAGATCCAATTAAAAATCAGCATGTCTCAAACATTTT
GTGTGTGTTGTCCACTGTTTCCTATTGTTTTGACCAAATTAAACTCTTTT
GCTGAAGCCACCTTTAAACAATATTATAAAAAGCTGTCAAGTTTCATGCT
TTTTGTATGACTGAAAAAAGTTTGTCATAATGTCCAAATTATAAAAAAAA
AACATATTAAGACAGATTAAGAGGCCAAAATTTACTCAAAGTCATTCTTA
TTCCCTTTCTGTCCACTGCTCATTGCCCTACAACCAGTTTTATGACCATG
ATGGACAATTCAATCTGCCTAATAAGGGTGCAGTATACAATGATGATGAG
CAGGATGAAATTCACACATCTGCTCTCCCAGCCAGATTTCTTGATGAAAC
AAATGGACAGGAATCTTTTGAATTTCTTCACTATATAAATACATATTGTC
CAATATAGTGAATTCTTTAGTCCTTTTATGTCTCACCAGATCATGGTTTA
TCAATATGAAGTCTATGACATTTGTTTACCAGGAACCAGCGGCTGAAAAT
AATGAACAGAAANAATATTATAAATACAGATTGTCCAATATAGTGAATTC
TTTAGTCCTTTTATGTCTCACCAGATCATGGTTTATCAATATGAAGTCTA
TGACATTTGTTTACCAGGAACCAGCGGCTGAAAATAATGAACAGAAATTT
TGGTTGATGAAGTCAGAGCCAGAGACAAGAATTGAAAAAGGAGTTGATGT
CAAGTTTGGCATTGAAGATCTTAAAAAGGAGCCAAAACAAACTGCCTGCT
GGGATGGTGTCAGAAATTATCAAGCACGTAACTTTATGAGAGATCAAATG
AAAGTTGGTAACAAAGCATTCTTCTATCACAGGTATTGGTTACTTTTTTG
AAAATCCTAAGATTTTTTATTTTACAGGCACATAAGTTAAAACCATTTGG
ATCAAGGTTTTCTAAAGTTTTCATCTGTAAATCCTCCAGAATCGTCTGTA
AATACACAAATTTGGCAAGCGATAATGTAATATGACTCATGATGCTTCTT
ATTTTGTCGAGGGAGGTTTACATACAATGTTTTAGCTCAAATTATTTAAC
TTTCTTAAAGAGTGGGTATTTAAAAGGGGGATCTTATTTTGAACAATTTT
AAGAATTGACGCCAACTGTCAAAAGTTCATGACAAAATAGTCACAGAAGA
TTTTCAAGACTGACAACATCATATGTTATTTAAAGATCCAAAAAAGGGCA
TCCAGGTACATTAACCAATAGTGTTATGATCATGTTAATATGTGTTTTTT
TGATAATGTTAAAATTTCAGTAATTGTAAAGTCCCGGGCATCGCTGGAAT
TATGACAATCGTAAAAGAAAGCTACCCTGATCATACACAGTTTGATTCTA
AAGATGTACATTTTGATCCAAAATCACAAAAAGAAAATCCAAAATGGTTT
ATGGTGGATGTCAAGTATGAGCGAATGATGAAAAGATATATTGGTCTCCC
AGAACTTAAAAAACTTCATTCAGAACACAAGTCTTCCCATGGTCCTTTGA
AATCCGTCGCTTTGTTTACAAGAGCTCGCCTTTCGGTGCAACCATTAACC
AAAGAAGAATATGATTACATTTTGACTCTGGAAGAAGTTGAAGAACCGTA
ATCTTTGACACCATTATAGACGCTAAACTTTTATACATTTTCTGTTTATA
TTGTAAATATTTTGGGAAATAAAAATCCTTTTTCTTTTTACTTTTGAAGT
TGGGTCCAAATTGTCTATTGAAATCCTAAAATCAATCAATTAATTAGTAA
ACGCAAGGTTGTGCAGACTTAATATCTTTTTTGTTATTCCACCTAAAGGC
CAA

Coding sequence (CDS) from alignment at scaffold_439:421158..426160-

>TCONS_00065430 ID=TCONS_00065430|Name=TCONS_00065430|organism=Clytia hemisphaerica|type=CDS|length=2043bp|location=Sequence derived from alignment at scaffold_439:421158..426160- (Clytia hemisphaerica)
TAATTGTAAAGTCCCGGGCATCGCTGGAATTATGACAATCGTAAAAGAAA
GCTACCCTGATCATACACAGTTTGATTCTAAAGATGTACATTTTGATCCA
AAATCACAAAAAGAAAATCCAAAATGGTTTATGGTGGATGTCAAGTATGA
GCGAATGATGAAAAGATATATTGGTCTCCCAGAACTTAAAAAACTTCATT
CAGAACACAAGTCTTCCCATGGTCCTTTGAAATCCGTCGCTTTGTTTACA
AGAGCTCGCCTTTCGGTGCAACCATTAACCAAAGAAGAATATGATTACAT
TTTGACTCTGGAAGAAGTTGAAGAACCGTAAATCATGGTTTATCAATATG
AAGTCTATGACATTTGTTTACCAGGAACCAGCGGCTGAAAATAATGAACA
GAAATTTTGGTTGATGAAGTCAGAGCCAGAGACAAGAATTGAAAAAGGAG
TTGATGTCAAGTTTGGCATTGAAGATCTTAAAAAGGAGCCAAAACAAACT
GCCTGCTGGGATGGTGTCAGAAATTATCAAGCACGTAACTTTATGAGAGA
TCAAATGAAAGTTGGTAACAAAGCATTCTTCTATCACAGATGTTATGGCT
CCTGCTAGAAAGAAACGAAGGACTACTGATAACATTGTCAAGGATGAAAA
CTTGGATAAAGTTTCAAAAGACTGTAAGAAGTAATTGTAAAGTCCCGGGC
ATCGCTGGAATTATGACAATCGTAAAAGAAAGCTACCCTGATCATACACA
GTTTGATTCTAAAGATGTACATTTTGATCCAAAATCACAAAAAGAAAATC
CAAAATGGTTTATGGTGGATGTCAAGTATGAGCGAATGATGAAAAGATAT
ATTGGTCTCCCAGAACTTAAAAAACTTCATTCAGAACACAAGTCTTCCCA
TGGTCCTTTGAAATCCGTCGCTTTGTTTACAAGAGCTCGCCTTTCGGTGC
AACCATTAACCAAAGAAGAATATGATTACATTTTGACTCTGGAAGAAGTT
GAAGAACCGTAAATCATGGTTTATCAATATGAAGTCTATGACATTTGTTT
ACCAGGAACCAGCGGCTGAAAATAATGAACAGAAATTTTGGTTGATGAAG
TCAGAGCCAGAGACAAGAATTGAAAAAGGAGTTGATGTCAAGTTTGGCAT
TGAAGATCTTAAAAAGGAGCCAAAACAAACTGCCTGCTGGGATGGTGTCA
GAAATTATCAAGCACGTAACTTTATGAGAGATCAAATGAAAGTTGGTAAC
AAAGCATTCTTCTATCACAGATGTTATGGCTCCTGCTAGAAAGAAACGAA
GGACTACTGATAACATTGTCAAGGATGAAAACTTGGATAAAGTTTCAAAA
GACTGTAAGAAGTAATTGTAAAGTCCCGGGCATCGCTGGAATTATGACAA
TCGTAAAAGAAAGCTACCCTGATCATACACAGTTTGATTCTAAAGATGTA
CATTTTGATCCAAAATCACAAAAAGAAAATCCAAAATGGTTTATGGTGGA
TGTCAAGTATGAGCGAATGATGAAAAGATATATTGGTCTCCCAGAACTTA
AAAAACTTCATTCAGAACACAAGTCTTCCCATGGTCCTTTGAAATCCGTC
GCTTTGTTTACAAGAGCTCGCCTTTCGGTGCAACCATTAACCAAAGAAGA
ATATGATTACATTTTGACTCTGGAAGAAGTTGAAGAACCGTAAATCATGG
TTTATCAATATGAAGTCTATGACATTTGTTTACCAGGAACCAGCGGCTGA
AAATAATGAACAGAAATTTTGGTTGATGAAGTCAGAGCCAGAGACAAGAA
TTGAAAAAGGAGTTGATGTCAAGTTTGGCATTGAAGATCTTAAAAAGGAG
CCAAAACAAACTGCCTGCTGGGATGGTGTCAGAAATTATCAAGCACGTAA
CTTTATGAGAGATCAAATGAAAGTTGGTAACAAAGCATTCTTCTATCACA
GATGTTATGGCTCCTGCTAGAAAGAAACGAAGGACTACTGATAACATTGT
CAAGGATGAAAACTTGGATAAAGTTTCAAAAGACTGTAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041005XLOC_041005Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
thymocyte nuclear proteinTCONS_00065430-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065430-exon-scaffold_439-1575043694:425958..426160TCONS_00065430-exon-scaffold_439-1575043694:425958..426160Clytia hemisphaericaexon
TCONS_00065430-exon-scaffold_439-1575043694:422129..422386TCONS_00065430-exon-scaffold_439-1575043694:422129..422386Clytia hemisphaericaexon
TCONS_00065430-exon-scaffold_439-1575043694:421158..421690TCONS_00065430-exon-scaffold_439-1575043694:421158..421690Clytia hemisphaericaexon
TCONS_00065430-exon-scaffold_439-1510915933:425958..426160TCONS_00065430-exon-scaffold_439-1510915933:425958..426160Clytia hemisphaericaexon
TCONS_00065430-exon-scaffold_439-1510915933:422129..422386TCONS_00065430-exon-scaffold_439-1510915933:422129..422386Clytia hemisphaericaexon
TCONS_00065430-exon-scaffold_439-1510915933:421158..421690TCONS_00065430-exon-scaffold_439-1510915933:421158..421690Clytia hemisphaericaexon
TCONS_00065430-exon-scaffold_439-1491911889:425958..426160TCONS_00065430-exon-scaffold_439-1491911889:425958..426160Clytia hemisphaericaexon
TCONS_00065430-exon-scaffold_439-1491911889:422129..422386TCONS_00065430-exon-scaffold_439-1491911889:422129..422386Clytia hemisphaericaexon
TCONS_00065430-exon-scaffold_439-1491911889:421158..421690TCONS_00065430-exon-scaffold_439-1491911889:421158..421690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:421158..426160 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
146.975	145.115	224.372	233.539	26.8013	14.4875	17.0831	14.2757	16.7356	12.2692	10.5844	8.95573	6.84226	6.42422	10.9143	12.2686	15.7188	12.9119	4.11732	6.51444	17.095	16.3468	77.0757	59.4506	11.8512	18.1719	16.3567	15.2374	33.934	42.785
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002740EVE_domain
IPR015947PUA-like_domain
Blast
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BLAST of TCONS_00065430 vs. Swiss-Prot (Human)
Match: THYN1 (Thymocyte nuclear protein 1 OS=Homo sapiens GN=THYN1 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.887e-86
Identity = 118/173 (68.21%), Postives = 145/173 (83.82%), Query Frame = 1 
Query:  265 NEQKFWLMKSEPETRIEKGVDVKFGIEDLKKEPKQTACWDGVRNYQARNFMRDQMKVGNKAFFYHSNCKVPGIAGIMTIVKESYPDHTQFDSKDVHFDPKSQKENPKWFMVDVKYERMMKRYIGLPELKKLHSEHKSSHGPLKSVALFTRARLSVQPLTKEEYDYILTLEEVE 783
            N    WLMKSEPE+R+EKGVDVKF IEDLK +PKQT CWDGVRNYQARNF+R  MK+G +AFFYHSNCK PGIAG+M IVKE+YPDHTQF+  + H+DP S+++NPKW MVDV++ RMMKR+I L ELK  H  HK++ GPLK++ LFTR RLS+QPLT+EE+D++L+LEE E
Sbjct:   52 NLSSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLR-AMKLGEEAFFYHSNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEEKE 223
The following BLAST results are available for this feature:
BLAST of TCONS_00065430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
THYN11.887e-8668.21Thymocyte nuclear protein 1 OS=Homo sapiens GN=THY... [more]
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