TCONS_00065429 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00065429
Unique Name	TCONS_00065429
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1300

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_439:416362..421104-

transcript sequence

>TCONS_00065429 ID=TCONS_00065429|Name=TCONS_00065429|organism=Clytia hemisphaerica|type=transcript|length=1300bp
tttagaAGCAAAGGTATATttcaaataattcaaaaaaaatgttatacTTG
ATTGGATTGGGACTTGGTGATGCTAAAGATATTACTGTGAAAGGATTGGA
AGCTGTTAAAAAAGCAGATCAAGTCTTTTTGGAAGCTTACACATCAATTT
TAACTGGAGGAAAAGAAGCTTTGGAACAATTTTATGGTCGTGAAGTAATC
CTTGCAGATAGAACACTTGTTGAGCAAGAATCAGATACGATATTGGAAAA
TGCCAAGGAAAAAGATGTCGTGTTTCTAGTTGTTGGTGACCCACTTGGAG
CAACAACACATACAGATTTGGTTATCAGAGCTGTAGAGAAGAATATTAAG
TATAAGATTATCCATAATGCTTCAATAATGAATGCTGCTGGATGTTGTGG
TTTACAGCTGTATAATTTTGGTGAAACAGTATCAATTGTCATGTGGAATG
AAAACTGGAAACCTAAAAgtttctttgaaaagattgcTCAAAACAAAAAG
CGAGGACTACACACTCTTTGTCTCTTAGATATCAAAGTAAAAGAACAGAG
TGTGGAAAATATGATGAGGGGCCGTAAAATATATGAACCACCAAGGTACT
TAACAGCTAATGATGCAATTCAACAAATATTGGAAATTGTTCAATCAGGG
GATGAAGAAATAGAAGGGAAAGATTTGATCACGGAAGACAGTTTTTGTGT
TGCACTTGCTCGTATTGGTTGGGAAGATCAACAAATATTCAGTGGTAAAA
TGTCTACAGTAAGAGATACAGATCTAGGACCACCTATACATTCTTTGGTG
ATCCCAGGTGATATGCATTTCATTGAAACTGACATGTTAAAATTATTTGC
AATACAACCAAGTGAATTTGCAGGACTTCCTTCTGCAtaattgttgttgt
tgattcAATTGGCTGAGTACTTCGAACGAGTTGTTACTGTATTGAGAATG
AAGTAAATGCCCAAAAATGATGCCTTTGGGTGGCAAGGTGCTTAGGTGCT
TGCTACTGTGTTAGCAACCAAGATTAGTGTGGTGTAtggtttaaaattta
aaaaaatggttaTTATTATCCATAAGACATACATTCAAGACACATTATCA
TAGGGATGCGTTAAAGTGAATATTATCCACAACTGAAGGAGACAATTATT
TTGTAGGTGGAGATTTaaatcaaattataaaattattttacttttttaca
aattatCTCTTTTATAAATTGTTTTTGAGCCTATACTATGAGGTAAGACT
TTGAAACAACTCAGAAACAACTTGGCTCTTCACTGTTTCCGTACTTTGAT

Run BLAST on NCBI

transcript from alignment at scaffold_439:416362..421104-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00065429 ID=TCONS_00065429|Name=TCONS_00065429|organism=Clytia hemisphaerica|type=transcript|length=4743bp|location=Sequence derived from alignment at scaffold_439:416362..421104- (Clytia hemisphaerica)
TTTAGAAGCAAAGGTATATTTCAAATAATTCAAAAAAAATGTTATACTTG
ATTGGATTGGGACTTGGTGATGCTAAAGATATTACTGTGAAAGGATTGGA
AGCTGTTAAAAAAGCAGATCAAGTCTTTTTGGAAGCTTACACATCAATTT
TAACTGGAGGAAAAGAAGCTTTGGTATGATCTGTCTTTTAAATGACACCC
TCTTCTCACAGACCTGGTGGGATTTTTTCAGCCAGTGGGGGTAGATATAA
CGGACCAGAACTCGATTGGGATTGATATTCCTATGTTTTTTCATAGCTTG
GGATTTGAATTCAATTGTTTTGGAGTGGGGATGAAAAAAAATATCATACT
ATTTTGCAATGAGGAATTGCTTATTGGATTTTTTTCATTTGGGACAAAAA
TTAAAGTATAATTCTGCATAATGTTTTTGTATAATGTAGGACTTTGTATA
GTAGGAATTGTTATGATCTTTTTATTTGCAGGAACAATTTTATGGTCGTG
AAGTAATCCTTGCAGATAGAACACTTGTTGAGCAAGAATCAGGTTTGGAT
GATTTCAAGTTTCTTTCCTAGAAAAACTTTGGCATAGTATCCGACTCCAA
AAGTGATCAAATTCGGTTCATATGGGTTAGTTTATGGCTCAAACCTGGTG
GGGGAACTCAAAAGACTGTTAGATTTGACTAAGATTTGTTATCCCTTTCT
TTGGTTTAATACCTAATGACCGAGTTTCAAATCCACGCTAGTTTTTTCCT
AAATTCTAATGTATTTCATTTAGATACGATATTGGAAAATGCCAAGGAAA
AAGATGTCGTGTTTCTAGTTGTTGGTGACCCACTTGGGTACGTGAAATTT
TCATTCTGCCATTTGCCATTTTCATTTGAAAATATGCAGGAGATGCGGGA
TAAATTCAAATAGCCCTCTAGACAGGGGCCATCTGTCTGTCTTTTGTCAT
TAGAGTTATAGTTGCCCCTTGCCCTGTACTCCTTTTATTCCTATCTCTCA
TTTTGATACTGATTAAGCTAAAACATGACAAAGTCATTAATGATGTATAC
CCAAAAGGGAGTTTCGCTTTGTGTCAATTTTCTTTCTGATTCTACTGTTT
CAACTCTTTCAACTGTTATAAATCTTAGAGCAACAACACATACAGATTTG
GTTATCAGAGCTGTAGAGAAGAATATTAAGTATAAGATTATCCATAATGC
TTCAATAATGAATGCTGCTGGATGTTGTGGTTTACAGGTTAAGAAATTTT
CAAATACATGTTGTTTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTATA
AATTCACCTCTGTCCGTTCATCCGTCTGTCCGTTCGTTACCAGCTTTTCT
CGAGATTGAATCATAGGAATCATTTGATTTTTGGTACAAAGGTGCAAAAC
GGTGATGGCCAAAATGTGACGGAGTCCGATTTTCGAAAAAAAAAAATTTT
CGGCTAATTTGGGCCAAAAAACGGCTAAAAAACGGTTTTTTTGGACTTTG
TGAAAAATCGGAACATTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGT
ACCATCATAGGTAAAAGATGGCTCAAGCAGATTTTTGCAAAAAAATTTAT
TTGGCTTAAAAAACGCNNNNNNNNNNNNNNNNCCACTATTAATAAGCATA
CATTAATGTTCTTAGTCAAATTACTCAATTTCTTTATGAGATAGATGTTT
TTTTTTGCTCACGAGGGCTTACTTTTGAAGCATATGTGTGTTTAGACATG
AAATTTTGGTTGCTTGGCGTGTTTTTATAGAAAAACTGGCCAAAGTCGAT
ATTTTTCTATCAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAG
ATTGGCTCTTTCATTCTTTATGATTTTTGCACAAAGATGCGTAACTATAA
ACCCTCGAATGTGACTGAGCCCGATTTTCGAAAAAAAATGTTTTTGGGCA
AATTTGGGCCAAAAAACGGCTAAAAAAAGGGTTTTTTGGACATTGTGAAA
TATTGGATCGTTGTTTTTTTTCTGATTTTTTTGCATGAAAGTAGGTAAAA
GATGGGTCAAGCAGATTTTTGTAAAAAACTTTTCAGCTCAAAAAATGCAT
CTTTATCTATAAGAATCACTATTGATAAGCAAATTACTCAATTTTTTGAT
GAGATAGATGTCTTTTTATGCTCACGAAGTCTTGAATATGAAAGAATATT
TCAAGAGCATGGAATTTTGGTTTCTAAACGTTTTTTTTATAAGAAACAAA
CGACTAATTTTAATAAATCGTCACTATTTGTGTTCTGAATGATTGTTTAA
CGTTCATGCTCACGTAGATATCAATTATATATGTGTTAAATGCATAACCA
GGTAGGTCGAAAAAGTATCACTTGTTTTATAAACAAGTGTCTGCCCCTAT
ACCAGGCTTGCATTATGCTTAGCATTCTATTGTTCTTAAACGATAGAGCC
ATTGTTTAGGTATCAAAAACTGAGCCTACATATGCTCATAAATGTTATGC
TTATAGAAAAAAAACATGTATTTTCTTTTCAGCCCTTTTGGCTGATAATG
CTGAAACTAAGTTTTGCTTTTAATATTTTAGTTTAATTCTAAACACAATA
AACTGTTCCTGGACACTGTCACTAATGCTATCTTTTGATAGAAATAAAAA
ATGACCAAATAATTTGAAAATAAACGTTTCGATATCCATATCCATTTAAG
AAACTGCCAATTATTTCTTGCACTTAAATTTAAAAGACATTATTTTCAGC
TGTATAATTTTGGTGAAACAGTATCAATTGTCATGTGGAATGAAAACTGG
AAACCTAAAAGTTTCTTTGAAAAGATTGCTCAAAACAAAAAGCGAGGACT
ACACACTCTTTGTCTCTTAGGTGAGTGCGCTTTCAAGATTTAGACCATGT
TCAGACGTTACGGTTCCGTCCTGAAACGAAACGAAACGGTTCCGAAACAA
GTGTGAACGTCAAAATTCAAAACTTCAGAAAAGAAGACGTTACAAAGCAA
AACAGATCGAAACGGTTTCGCTCCACTTTTTTCATCGGAACGGAACTGCT
CCGTTTTCTTGCTCCGAAACGTTCTGAAACCAATATGAACACACTCGATC
AGTAACGAATATCATACCGGAGCGAAACGGGACAGTAACGTGTGAACATG
ATTTTAGCCAGTAACTTTGAAGGAAGCGTTTTAGTCTAAAGCTAGGAGAA
TCTTCCAAAACACTCCATCTGCAATTTGCACAAGATAATCCTCGTATCAT
GGACATATTTATTATTGACTCGGATAGATTATAATATGAAATTTCAGGTT
CTTAAAACTAAAATAGTTTTTGTCTGTTTTCTAGCTGAAATCGTATTATG
TTCTAGGCTGCGGCCTAATTTATGCTTCTGCATTTAGTATAGCAGTTTCG
AAGTGACATTTAATGTTACTCATATATTGATAATATAAACTTTTCTGTGT
TGCAGATATCAAAGTAAAAGAACAGAGTGTGGAAAATATGATGAGGTATG
ATATTTCAAAACTTGGTTTTTAGACCGGAGGAGACTCGGAGGTCCTGTAA
ATCGTCCGTTCGTCCGTTCATTTGTCCGCCCGTTCATCTGTTACCAGTTT
TTCATTTTCTTACTATTGTTGCCAATTTTTCTATGTTGCTATTACATTAG
CTTTGTAAGTCTATTCAGCATGTAGCTTGTTAATCTATACAGTCTGTCAT
GGAGTATAATCTTGAGACTTTTGGAACATGCAAACTGCCCAGTGAGAAAC
ATTTCAAACATTGTTTTTTTATTTGTTCTCTCATTCCACAGGGGCCGTAA
AATATATGAACCACCAAGGTACTTAACAGCTAATGATGCAATTCAACAAA
TATTGGAAATTGTTCAATCAGGGGATGAAGAAATAGAAGGGAAAGATTGT
AAGTATACTTTCTTTTCTAACATTTTGCTGTTAAGTATAATTTTACTGGC
ATTCACTTGGTCTGCAAGTTAAACTATTCCAGTAATAAGATTTGATATGT
ATTTGTACAAGGAAAACAGCTCAATGATCACCAGTTTTCATGTTTTATGT
TACAATTATTTCCTGGTGCTAACTCTACTTTTTGGTTTCCAAAATGATAT
CTTCATGGTCTTTTTCAGTGATCACGGAAGACAGTTTTTGTGTTGCACTT
GCTCGTATTGGTTGGGAAGATCAACAAATATTCAGTGGTAAAATGTCTAC
AGTAAGAGATACAGATCTAGGACCACCTATACATTCTTTGGTGATCCCAG
GTGATATGCATTTCATTGAAACTGACATGTTAAAATTATTTGCAATACAA
CCAAGTGAATTTGCAGGACTTCCTTCTGCATAATTGTTGTTGTTGATTCA
ATTGGCTGAGTACTTCGAACGAGTTGTTACTGTATTGAGAATGAAGTAAA
TGCCCAAAAATGATGCCTTTGGGTGGCAAGGTGCTTAGGTGCTTGCTACT
GTGTTAGCAACCAAGATTAGTGTGGTGTATGGTTTAAAATTTAAAAAAAT
GGTTATTATTATCCATAAGACATACATTCAAGACACATTATCATAGGGAT
GCGTTAAAGTGAATATTATCCACAACTGAAGGAGACAATTATTTTGTAGG
TGGAGATTTAAATCAAATTATAAAATTATTTTACTTTTTTACAAATTATC
TCTTTTATAAATTGTTTTTGAGCCTATACTATGAGGTAAGACTTTGAAAC
AACTCAGAAACAACTTGGCTCTTCACTGTTTCCGTACTTTGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041004	XLOC_041004	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_439	supercontig	scaffold_439:416362..421104 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.1318	37.5766	13.766	11.1106	13.4392	12.1134	14.0083	13.4342	17.0757	16.4353	10.5004	9.03807	9.41154	11.0129	16.0711	14.5747	16.3589	18.5565	5.60001	6.13401	18.7568	18.6112	47.5094	38.8522	12.1976	16.17	18.5046	17.403	31.979	32.8319

Blast

[Close]

BLAST of TCONS_00065429 vs. Swiss-Prot (Human)
Match: DPH5 (Diphthine methyl ester synthase OS=Homo sapiens GN=DPH5 PE=1 SV=2)

HSP 1 Score: 370.933 bits (951), Expect = 3.369e-126
Identity = 172/274 (62.77%), Postives = 225/274 (82.12%), Query Frame = 3

Query:   39 MLYLIGLGLGDAKDITVKGLEAVKKADQVFLEAYTSILTGGKEALEQFYGREVILADRTLVEQESDTILENAKEKDVVFLVVGDPLGATTHTDLVIRAVEKNIKYKIIHNASIMNAAGCCGLQLYNFGETVSIVMWNENWKPKSFFEKIAQNKKRGLHTLCLLDIKVKEQSVENMMRGRKIYEPPRYLTANDAIQQILEIVQSGDEEIEGKD-LITEDSFCVALARIGWEDQQIFSGKMSTVRDTDLGPPIHSLVIP-GDMHFIETDMLKLFAI 854
            MLYLIGLGLGDAKDITVKGLE V++  +V+LEAYTS+LT GKEALE+FYGR++++ADR  VEQE+D IL++A   DV FLVVGDP GATTH+DLV+RA +  I Y++IHNASIMNA GCCGLQLY FGETVSIV W + W+P+SFF+K+ +N++ G+HTLCLLDIKVKEQS+EN+++GRKIYEPPRY++ N A QQ+LEIVQ  ++ I G++  +TE++ CV LAR+G +DQ+I +G +  +   DLG P+HSL+I  G +H +E +ML LF+I
Sbjct:    1 MLYLIGLGLGDAKDITVKGLEVVRRCSRVYLEAYTSVLTVGKEALEEFYGRKLVVADREEVEQEADNILKDADISDVAFLVVGDPFGATTHSDLVLRATKLGIPYRVIHNASIMNAVGCCGLQLYKFGETVSIVFWTDTWRPESFFDKVKKNRQNGMHTLCLLDIKVKEQSLENLIKGRKIYEPPRYMSVNQAAQQLLEIVQ--NQRIRGEEPAVTEETLCVGLARVGADDQKIAAGTLRQMCTVDLGEPLHSLIITGGSIHPMEMEMLSLFSI 272

The following BLAST results are available for this feature:

BLAST of TCONS_00065429 vs. Swiss-Prot (Human)

BLAST of TCONS_00065429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DPH5	3.369e-126	62.77	Diphthine methyl ester synthase OS=Homo sapiens GN...	[more]

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TCONS_00065429 (transcript) - C. hemisphaerica