TCONS_00065428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065428
Unique NameTCONS_00065428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065428 ID=TCONS_00065428|Name=TCONS_00065428|organism=Clytia hemisphaerica|type=transcript|length=766bp
tttagaAGCAAAGGTATATttcaaataattcaaaaaaaatgttatacTTG
ATTGGATTGGGACTTGGTGATGCTAAAGATATTACTGTGAAAGGATTGGA
AGCTGTTAAAAAAGCAGATCAAGTCTTTTTGGAAGCTTACACATCAATTT
TAACTGGAGGAAAAGAAGCTTTGGAACAATTTTATGGTCGTGAAGTAATC
CTTGCAGATAGAACACTTGTTGAGCAAGAATCAGATACGATATTGGAAAA
TGCCAAGGAAAAAGATGTCGTGTTTCTAGTTGTTGGTGACCCACTTGGAG
CAACAACACATACAGATTTGGTTATCAGAGCTGTAGAGAAGAATATTAAG
TATAAGATTATCCATAATGCTTCAATAATGAATGCTGCTGGATGTTGTGG
TTTACAGCTGTATAATTTTGGTGAAACAGTATCAATTGTCATGTGGAATG
AAAACTGGAAACCTAAAAgtttctttgaaaagattgcTCAAAACAAAAAG
CGAGGACTACACACTCTTTGTCTCTTAGATATCAAAGTAAAAGAACAGAG
TGTGGAAAATATGATGAGGGGCCGTAAAATATATGAACCACCAAGGTACT
TAACAGCTAATGATGCAATTCAACAAATATTGGAAATTGTTCAATCAGGG
GATGAAGAAATAGAAGGGAAAGATTTGATCACGGAAGACAGTTTTTGTGT
TGCACTTGCTCGTATTGGTTGGGAAGATCAACAAATATTCAGTGGCTGGA
TCACAATGTATGGTGC
Run BLAST on NCBI

protein sequence of TCONS_00065428-protein

>TCONS_00065428-protein ID=TCONS_00065428-protein|Name=TCONS_00065428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MLYLIGLGLGDAKDITVKGLEAVKKADQVFLEAYTSILTGGKEALEQFYG
REVILADRTLVEQESDTILENAKEKDVVFLVVGDPLGATTHTDLVIRAVE
KNIKYKIIHNASIMNAAGCCGLQLYNFGETVSIVMWNENWKPKSFFEKIA
QNKKRGLHTLCLLDIKVKEQSVENMMRGRKIYEPPRYLTANDAIQQILEI
VQSGDEEIEGKDLITEDSFCVALARIGWEDQQIFSGWITMYG
Run BLAST on NCBI

transcript from alignment at scaffold_439:414219..421104-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065428 ID=TCONS_00065428|Name=TCONS_00065428|organism=Clytia hemisphaerica|type=transcript|length=6886bp|location=Sequence derived from alignment at scaffold_439:414219..421104- (Clytia hemisphaerica)
TTTAGAAGCAAAGGTATATTTCAAATAATTCAAAAAAAATGTTATACTTG
ATTGGATTGGGACTTGGTGATGCTAAAGATATTACTGTGAAAGGATTGGA
AGCTGTTAAAAAAGCAGATCAAGTCTTTTTGGAAGCTTACACATCAATTT
TAACTGGAGGAAAAGAAGCTTTGGTATGATCTGTCTTTTAAATGACACCC
TCTTCTCACAGACCTGGTGGGATTTTTTCAGCCAGTGGGGGTAGATATAA
CGGACCAGAACTCGATTGGGATTGATATTCCTATGTTTTTTCATAGCTTG
GGATTTGAATTCAATTGTTTTGGAGTGGGGATGAAAAAAAATATCATACT
ATTTTGCAATGAGGAATTGCTTATTGGATTTTTTTCATTTGGGACAAAAA
TTAAAGTATAATTCTGCATAATGTTTTTGTATAATGTAGGACTTTGTATA
GTAGGAATTGTTATGATCTTTTTATTTGCAGGAACAATTTTATGGTCGTG
AAGTAATCCTTGCAGATAGAACACTTGTTGAGCAAGAATCAGGTTTGGAT
GATTTCAAGTTTCTTTCCTAGAAAAACTTTGGCATAGTATCCGACTCCAA
AAGTGATCAAATTCGGTTCATATGGGTTAGTTTATGGCTCAAACCTGGTG
GGGGAACTCAAAAGACTGTTAGATTTGACTAAGATTTGTTATCCCTTTCT
TTGGTTTAATACCTAATGACCGAGTTTCAAATCCACGCTAGTTTTTTCCT
AAATTCTAATGTATTTCATTTAGATACGATATTGGAAAATGCCAAGGAAA
AAGATGTCGTGTTTCTAGTTGTTGGTGACCCACTTGGGTACGTGAAATTT
TCATTCTGCCATTTGCCATTTTCATTTGAAAATATGCAGGAGATGCGGGA
TAAATTCAAATAGCCCTCTAGACAGGGGCCATCTGTCTGTCTTTTGTCAT
TAGAGTTATAGTTGCCCCTTGCCCTGTACTCCTTTTATTCCTATCTCTCA
TTTTGATACTGATTAAGCTAAAACATGACAAAGTCATTAATGATGTATAC
CCAAAAGGGAGTTTCGCTTTGTGTCAATTTTCTTTCTGATTCTACTGTTT
CAACTCTTTCAACTGTTATAAATCTTAGAGCAACAACACATACAGATTTG
GTTATCAGAGCTGTAGAGAAGAATATTAAGTATAAGATTATCCATAATGC
TTCAATAATGAATGCTGCTGGATGTTGTGGTTTACAGGTTAAGAAATTTT
CAAATACATGTTGTTTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTATA
AATTCACCTCTGTCCGTTCATCCGTCTGTCCGTTCGTTACCAGCTTTTCT
CGAGATTGAATCATAGGAATCATTTGATTTTTGGTACAAAGGTGCAAAAC
GGTGATGGCCAAAATGTGACGGAGTCCGATTTTCGAAAAAAAAAAATTTT
CGGCTAATTTGGGCCAAAAAACGGCTAAAAAACGGTTTTTTTGGACTTTG
TGAAAAATCGGAACATTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGT
ACCATCATAGGTAAAAGATGGCTCAAGCAGATTTTTGCAAAAAAATTTAT
TTGGCTTAAAAAACGCNNNNNNNNNNNNNNNNCCACTATTAATAAGCATA
CATTAATGTTCTTAGTCAAATTACTCAATTTCTTTATGAGATAGATGTTT
TTTTTTGCTCACGAGGGCTTACTTTTGAAGCATATGTGTGTTTAGACATG
AAATTTTGGTTGCTTGGCGTGTTTTTATAGAAAAACTGGCCAAAGTCGAT
ATTTTTCTATCAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAG
ATTGGCTCTTTCATTCTTTATGATTTTTGCACAAAGATGCGTAACTATAA
ACCCTCGAATGTGACTGAGCCCGATTTTCGAAAAAAAATGTTTTTGGGCA
AATTTGGGCCAAAAAACGGCTAAAAAAAGGGTTTTTTGGACATTGTGAAA
TATTGGATCGTTGTTTTTTTTCTGATTTTTTTGCATGAAAGTAGGTAAAA
GATGGGTCAAGCAGATTTTTGTAAAAAACTTTTCAGCTCAAAAAATGCAT
CTTTATCTATAAGAATCACTATTGATAAGCAAATTACTCAATTTTTTGAT
GAGATAGATGTCTTTTTATGCTCACGAAGTCTTGAATATGAAAGAATATT
TCAAGAGCATGGAATTTTGGTTTCTAAACGTTTTTTTTATAAGAAACAAA
CGACTAATTTTAATAAATCGTCACTATTTGTGTTCTGAATGATTGTTTAA
CGTTCATGCTCACGTAGATATCAATTATATATGTGTTAAATGCATAACCA
GGTAGGTCGAAAAAGTATCACTTGTTTTATAAACAAGTGTCTGCCCCTAT
ACCAGGCTTGCATTATGCTTAGCATTCTATTGTTCTTAAACGATAGAGCC
ATTGTTTAGGTATCAAAAACTGAGCCTACATATGCTCATAAATGTTATGC
TTATAGAAAAAAAACATGTATTTTCTTTTCAGCCCTTTTGGCTGATAATG
CTGAAACTAAGTTTTGCTTTTAATATTTTAGTTTAATTCTAAACACAATA
AACTGTTCCTGGACACTGTCACTAATGCTATCTTTTGATAGAAATAAAAA
ATGACCAAATAATTTGAAAATAAACGTTTCGATATCCATATCCATTTAAG
AAACTGCCAATTATTTCTTGCACTTAAATTTAAAAGACATTATTTTCAGC
TGTATAATTTTGGTGAAACAGTATCAATTGTCATGTGGAATGAAAACTGG
AAACCTAAAAGTTTCTTTGAAAAGATTGCTCAAAACAAAAAGCGAGGACT
ACACACTCTTTGTCTCTTAGGTGAGTGCGCTTTCAAGATTTAGACCATGT
TCAGACGTTACGGTTCCGTCCTGAAACGAAACGAAACGGTTCCGAAACAA
GTGTGAACGTCAAAATTCAAAACTTCAGAAAAGAAGACGTTACAAAGCAA
AACAGATCGAAACGGTTTCGCTCCACTTTTTTCATCGGAACGGAACTGCT
CCGTTTTCTTGCTCCGAAACGTTCTGAAACCAATATGAACACACTCGATC
AGTAACGAATATCATACCGGAGCGAAACGGGACAGTAACGTGTGAACATG
ATTTTAGCCAGTAACTTTGAAGGAAGCGTTTTAGTCTAAAGCTAGGAGAA
TCTTCCAAAACACTCCATCTGCAATTTGCACAAGATAATCCTCGTATCAT
GGACATATTTATTATTGACTCGGATAGATTATAATATGAAATTTCAGGTT
CTTAAAACTAAAATAGTTTTTGTCTGTTTTCTAGCTGAAATCGTATTATG
TTCTAGGCTGCGGCCTAATTTATGCTTCTGCATTTAGTATAGCAGTTTCG
AAGTGACATTTAATGTTACTCATATATTGATAATATAAACTTTTCTGTGT
TGCAGATATCAAAGTAAAAGAACAGAGTGTGGAAAATATGATGAGGTATG
ATATTTCAAAACTTGGTTTTTAGACCGGAGGAGACTCGGAGGTCCTGTAA
ATCGTCCGTTCGTCCGTTCATTTGTCCGCCCGTTCATCTGTTACCAGTTT
TTCATTTTCTTACTATTGTTGCCAATTTTTCTATGTTGCTATTACATTAG
CTTTGTAAGTCTATTCAGCATGTAGCTTGTTAATCTATACAGTCTGTCAT
GGAGTATAATCTTGAGACTTTTGGAACATGCAAACTGCCCAGTGAGAAAC
ATTTCAAACATTGTTTTTTTATTTGTTCTCTCATTCCACAGGGGCCGTAA
AATATATGAACCACCAAGGTACTTAACAGCTAATGATGCAATTCAACAAA
TATTGGAAATTGTTCAATCAGGGGATGAAGAAATAGAAGGGAAAGATTGT
AAGTATACTTTCTTTTCTAACATTTTGCTGTTAAGTATAATTTTACTGGC
ATTCACTTGGTCTGCAAGTTAAACTATTCCAGTAATAAGATTTGATATGT
ATTTGTACAAGGAAAACAGCTCAATGATCACCAGTTTTCATGTTTTATGT
TACAATTATTTCCTGGTGCTAACTCTACTTTTTGGTTTCCAAAATGATAT
CTTCATGGTCTTTTTCAGTGATCACGGAAGACAGTTTTTGTGTTGCACTT
GCTCGTATTGGTTGGGAAGATCAACAAATATTCAGTGGTAAAATGTCTAC
AGTAAGAGATACAGATCTAGGACCACCTATACATTCTTTGGTGATCCCAG
GTGATATGCATTTCATTGAAACTGACATGTTAAAATTATTTGCAATACAA
CCAAGTGAATTTGCAGGACTTCCTTCTGCATAATTGTTGTTGTTGATTCA
ATTGGCTGAGTACTTCGAACGAGTTGTTACTGTATTGAGAATGAAGTAAA
TGCCCAAAAATGATGCCTTTGGGTGGCAAGGTGCTTAGGTGCTTGCTACT
GTGTTAGCAACCAAGATTAGTGTGGTGTATGGTTTAAAATTTAAAAAAAT
GGTTATTATTATCCATAAGACATACATTCAAGACACATTATCATAGGGAT
GCGTTAAAGTGAATATTATCCACAACTGAAGGAGACAATTATTTTGTAGG
TGGAGATTTAAATCAAATTATAAAATTATTTTACTTTTTTACAAATTATC
TCTTTTATAAATTGTTTTTGAGCCTATACTATGAGGTAAGACTTTGAAAC
AACTCAGAAACAACTTGGCTCTTCACTGTTTCCGTACTTTGATAAAAACA
GCATAAACTGACACGTGCAAGAAATTTTTATTTGCTAACCTGAAGTTTTA
AAGGTATCTTTTTACAAATTATTTAATTAACTGATTTATGTTAATTGGAC
GTAATCTCAAAATTGAAAGAAAATAAAATGTTTTTCTTTTAACCTTAGAT
ACCAGAATATTAGACGGTTGAACGTGTTCCCTGTTCTAAACTTTTTAAAG
AATTTTATCAATTAGCACCATTTAATCATATGTCACACTTGGCCACTTTC
GATCGGTCTCTAACTTAAATACATACCATAAACGATGTTGGTCAAACGAT
ATTGATCAATCAATCAATTAATCAATCATAGTGAGGTCAGGTAGCACATA
AAAACGTAAGAATACTTCAGATGGTGATTAAAGCATGAAATTTGGCACAG
ATGATCCTTAGAGGGTCTAAAACTTAATAAAGCTTATCATCAGGCTTTCG
ATTGATGTGAGTATCATTTACGTAGCACCTTTCTATCAATAATAACATTT
TCTTCTTAATTTTTCTTCACTTTCTAGGACGAATTCTGAAAAACTAAGTA
GTGAAAAATACAAACGCATTTAAATATCTCTCCAACGGTACCAAAGTTTT
AAATATACAGCAGGTTGGAAAGTTATGACAAAAAATAAAAACACTGCACA
CCTTTTTGANCGGAAAGAGCATTAAATGCTGATGAAAATTGAGGTATAAA
ACATACCTTCAAAATCTTCCTATCAAAAGTTATGAAGGTTGAAAGTTTTT
TGATGACGTCATCATTTAGTACAAATTGACCAAATTTCATGTTTTATACA
TGAATTCATATCAAAATTCATTGCTTTTTCCGATTCCGATGTTCAAATTG
AATTAAAAGCTTTAAATCCTACAGAATACTAAAACTTAGATTTTGAGCTT
CATAAGGCAAATCAACGCAGCGTTCTCCCTTCAAGAACACAGTGTACAAC
CAACTAATTTTTTTGGATGTTTTAAGCCTTCTTATGTTGTTTAGACTTAA
GCATCAGAAGGAACTTCGATTTTTGACATGGATTCATGTATAAAACACTA
AATTTGGTCAACTAGTTCCGTTATTACGGGATTTTAGGTTTTGCCTGGAA
AGGCTTAAGATGACGTCATCACAAAACTTTAAACCTTCATAACTTTTGAT
AGGAAGATTTTGAAGGCATGTTTTATACCTCAATTTTCATCAGCATTTCA
TGCTCTTTCCACTGATACCATCAGATTTTAAATATTTTCAAAAAAATAAA
TTTTTGCTAAGCTACCTGATGACGTCATCTGGCAGGTGGCCAGGTGGCAA
AATTTGGTGTTACTGTTTGAAATTAAGTTTTAGACCCTCTAAGGATCATC
TGTGCCAATTTNTGGTGTTACTGTTTGAAATTAAGTTTTAGACCCTCTAA
GAATCATCTGTGCCAAATTTCATGCTTTAATCACCATCTGAAGTATTTTT
GTGCTAACAGACCTCACTAATCAATAGAAATGTGATTTTTCTTTAAAAAC
TAGTAATAATGTATCAAAAAATTTTTGTAATACCTAAAAGAGAGGATATT
ACAAAAGATTCTGCTAAATCAATTTACGTAATTAAAATGTCAGATATATA
ATGATAAATTTTCTTTTTTTCTTTTAGTTTCAGCTTAGGAAAAGAAATAG
TTGATTGTCAAAAGCAAAGAGTATTTAATTCCAGATCACTGAATGACGAA
AAGAACAAAGAGGACAAATCTCACTTAAGAAGATCATTCTATCCTTTTTG
ATACAAAATCATTCGATTAATTTCGGCTTAGTTTTGAAATAGGAGCTGAC
AGTTTCCTGCAAACTGTCAGATTTTGTTTCAATCTTGATCCAAACGGTTG
TCAAACATAACTGTCACATTGCCACTATTACTATTTTTTAATTACATATT
TTATGAGTCTTTTATTTAATTTTACGATGATCTGTTTTTTAAGACCAATC
ATCATTTTTGCTTGTGAGATCCCCAATAGTGTCATGTATTGTTCTAATGG
AAAAATAGGCTTGAGTTGAGTTTTTCGATGGCAAAATGTCTCGATGCAGA
TCCTCAATTTGTTATCTAAAAGATCTTACCCACAGTTCTTGTAACAAATT
TACGTTTATTTCAGGCTGGATCACAATGTATGGTGC

Coding sequence (CDS) from alignment at scaffold_439:414219..421104-

>TCONS_00065428 ID=TCONS_00065428|Name=TCONS_00065428|organism=Clytia hemisphaerica|type=CDS|length=6534bp|location=Sequence derived from alignment at scaffold_439:414219..421104- (Clytia hemisphaerica)
GCTGGATCACAATGTATGGTTGATCACGGAAGACAGTTTTTGTGTTGCAC
TTGCTCGTATTGGTTGGGAAGATCAACAAATATTCAGTGGGGCCGTAAAA
TATATGAACCACCAAGGTACTTAACAGCTAATGATGCAATTCAACAAATA
TTGGAAATTGTTCAATCAGGGGATGAAGAAATAGAAGGGAAAGATTATAT
CAAAGTAAAAGAACAGAGTGTGGAAAATATGATGAGCTGTATAATTTTGG
TGAAACAGTATCAATTGTCATGTGGAATGAAAACTGGAAACCTAAAAGTT
TCTTTGAAAAGATTGCTCAAAACAAAAAGCGAGGACTACACACTCTTTGT
CTCTTAGAGCAACAACACATACAGATTTGGTTATCAGAGCTGTAGAGAAG
AATATTAAGTATAAGATTATCCATAATGCTTCAATAATGAATGCTGCTGG
ATGTTGTGGTTTACAGATACGATATTGGAAAATGCCAAGGAAAAAGATGT
CGTGTTTCTAGTTGTTGGTGACCCACTTGGGAACAATTTTATGGTCGTGA
AGTAATCCTTGCAGATAGAACACTTGTTGAGCAAGAATCAGATGTTATAC
TTGATTGGATTGGGACTTGGTGATGCTAAAGATATTACTGTGAAAGGATT
GGAAGCTGTTAAAAAAGCAGATCAAGTCTTTTTGGAAGCTTACACATCAA
TTTTAACTGGAGGAAAAGAAGCTTTGGCTGGATCACAATGTATGGTTGAT
CACGGAAGACAGTTTTTGTGTTGCACTTGCTCGTATTGGTTGGGAAGATC
AACAAATATTCAGTGGGGCCGTAAAATATATGAACCACCAAGGTACTTAA
CAGCTAATGATGCAATTCAACAAATATTGGAAATTGTTCAATCAGGGGAT
GAAGAAATAGAAGGGAAAGATTATATCAAAGTAAAAGAACAGAGTGTGGA
AAATATGATGAGCTGTATAATTTTGGTGAAACAGTATCAATTGTCATGTG
GAATGAAAACTGGAAACCTAAAAGTTTCTTTGAAAAGATTGCTCAAAACA
AAAAGCGAGGACTACACACTCTTTGTCTCTTAGAGCAACAACACATACAG
ATTTGGTTATCAGAGCTGTAGAGAAGAATATTAAGTATAAGATTATCCAT
AATGCTTCAATAATGAATGCTGCTGGATGTTGTGGTTTACAGATACGATA
TTGGAAAATGCCAAGGAAAAAGATGTCGTGTTTCTAGTTGTTGGTGACCC
ACTTGGGAACAATTTTATGGTCGTGAAGTAATCCTTGCAGATAGAACACT
TGTTGAGCAAGAATCAGATGTTATACTTGATTGGATTGGGACTTGGTGAT
GCTAAAGATATTACTGTGAAAGGATTGGAAGCTGTTAAAAAAGCAGATCA
AGTCTTTTTGGAAGCTTACACATCAATTTTAACTGGAGGAAAAGAAGCTT
TGGCTGGATCACAATGTATGGTTGATCACGGAAGACAGTTTTTGTGTTGC
ACTTGCTCGTATTGGTTGGGAAGATCAACAAATATTCAGTGGGGCCGTAA
AATATATGAACCACCAAGGTACTTAACAGCTAATGATGCAATTCAACAAA
TATTGGAAATTGTTCAATCAGGGGATGAAGAAATAGAAGGGAAAGATTAT
ATCAAAGTAAAAGAACAGAGTGTGGAAAATATGATGAGCTGTATAATTTT
GGTGAAACAGTATCAATTGTCATGTGGAATGAAAACTGGAAACCTAAAAG
TTTCTTTGAAAAGATTGCTCAAAACAAAAAGCGAGGACTACACACTCTTT
GTCTCTTAGAGCAACAACACATACAGATTTGGTTATCAGAGCTGTAGAGA
AGAATATTAAGTATAAGATTATCCATAATGCTTCAATAATGAATGCTGCT
GGATGTTGTGGTTTACAGATACGATATTGGAAAATGCCAAGGAAAAAGAT
GTCGTGTTTCTAGTTGTTGGTGACCCACTTGGGAACAATTTTATGGTCGT
GAAGTAATCCTTGCAGATAGAACACTTGTTGAGCAAGAATCAGATGTTAT
ACTTGATTGGATTGGGACTTGGTGATGCTAAAGATATTACTGTGAAAGGA
TTGGAAGCTGTTAAAAAAGCAGATCAAGTCTTTTTGGAAGCTTACACATC
AATTTTAACTGGAGGAAAAGAAGCTTTGGCTGGATCACAATGTATGGTTG
ATCACGGAAGACAGTTTTTGTGTTGCACTTGCTCGTATTGGTTGGGAAGA
TCAACAAATATTCAGTGGGGCCGTAAAATATATGAACCACCAAGGTACTT
AACAGCTAATGATGCAATTCAACAAATATTGGAAATTGTTCAATCAGGGG
ATGAAGAAATAGAAGGGAAAGATTATATCAAAGTAAAAGAACAGAGTGTG
GAAAATATGATGAGCTGTATAATTTTGGTGAAACAGTATCAATTGTCATG
TGGAATGAAAACTGGAAACCTAAAAGTTTCTTTGAAAAGATTGCTCAAAA
CAAAAAGCGAGGACTACACACTCTTTGTCTCTTAGAGCAACAACACATAC
AGATTTGGTTATCAGAGCTGTAGAGAAGAATATTAAGTATAAGATTATCC
ATAATGCTTCAATAATGAATGCTGCTGGATGTTGTGGTTTACAGATACGA
TATTGGAAAATGCCAAGGAAAAAGATGTCGTGTTTCTAGTTGTTGGTGAC
CCACTTGGGAACAATTTTATGGTCGTGAAGTAATCCTTGCAGATAGAACA
CTTGTTGAGCAAGAATCAGATGTTATACTTGATTGGATTGGGACTTGGTG
ATGCTAAAGATATTACTGTGAAAGGATTGGAAGCTGTTAAAAAAGCAGAT
CAAGTCTTTTTGGAAGCTTACACATCAATTTTAACTGGAGGAAAAGAAGC
TTTGGCTGGATCACAATGTATGGTTGATCACGGAAGACAGTTTTTGTGTT
GCACTTGCTCGTATTGGTTGGGAAGATCAACAAATATTCAGTGGGGCCGT
AAAATATATGAACCACCAAGGTACTTAACAGCTAATGATGCAATTCAACA
AATATTGGAAATTGTTCAATCAGGGGATGAAGAAATAGAAGGGAAAGATT
ATATCAAAGTAAAAGAACAGAGTGTGGAAAATATGATGAGCTGTATAATT
TTGGTGAAACAGTATCAATTGTCATGTGGAATGAAAACTGGAAACCTAAA
AGTTTCTTTGAAAAGATTGCTCAAAACAAAAAGCGAGGACTACACACTCT
TTGTCTCTTAGAGCAACAACACATACAGATTTGGTTATCAGAGCTGTAGA
GAAGAATATTAAGTATAAGATTATCCATAATGCTTCAATAATGAATGCTG
CTGGATGTTGTGGTTTACAGATACGATATTGGAAAATGCCAAGGAAAAAG
ATGTCGTGTTTCTAGTTGTTGGTGACCCACTTGGGAACAATTTTATGGTC
GTGAAGTAATCCTTGCAGATAGAACACTTGTTGAGCAAGAATCAGATGTT
ATACTTGATTGGATTGGGACTTGGTGATGCTAAAGATATTACTGTGAAAG
GATTGGAAGCTGTTAAAAAAGCAGATCAAGTCTTTTTGGAAGCTTACACA
TCAATTTTAACTGGAGGAAAAGAAGCTTTGGCTGGATCACAATGTATGGT
TGATCACGGAAGACAGTTTTTGTGTTGCACTTGCTCGTATTGGTTGGGAA
GATCAACAAATATTCAGTGGGGCCGTAAAATATATGAACCACCAAGGTAC
TTAACAGCTAATGATGCAATTCAACAAATATTGGAAATTGTTCAATCAGG
GGATGAAGAAATAGAAGGGAAAGATTATATCAAAGTAAAAGAACAGAGTG
TGGAAAATATGATGAGCTGTATAATTTTGGTGAAACAGTATCAATTGTCA
TGTGGAATGAAAACTGGAAACCTAAAAGTTTCTTTGAAAAGATTGCTCAA
AACAAAAAGCGAGGACTACACACTCTTTGTCTCTTAGAGCAACAACACAT
ACAGATTTGGTTATCAGAGCTGTAGAGAAGAATATTAAGTATAAGATTAT
CCATAATGCTTCAATAATGAATGCTGCTGGATGTTGTGGTTTACAGATAC
GATATTGGAAAATGCCAAGGAAAAAGATGTCGTGTTTCTAGTTGTTGGTG
ACCCACTTGGGAACAATTTTATGGTCGTGAAGTAATCCTTGCAGATAGAA
CACTTGTTGAGCAAGAATCAGATGTTATACTTGATTGGATTGGGACTTGG
TGATGCTAAAGATATTACTGTGAAAGGATTGGAAGCTGTTAAAAAAGCAG
ATCAAGTCTTTTTGGAAGCTTACACATCAATTTTAACTGGAGGAAAAGAA
GCTTTGGCTGGATCACAATGTATGGTTGATCACGGAAGACAGTTTTTGTG
TTGCACTTGCTCGTATTGGTTGGGAAGATCAACAAATATTCAGTGGGGCC
GTAAAATATATGAACCACCAAGGTACTTAACAGCTAATGATGCAATTCAA
CAAATATTGGAAATTGTTCAATCAGGGGATGAAGAAATAGAAGGGAAAGA
TTATATCAAAGTAAAAGAACAGAGTGTGGAAAATATGATGAGCTGTATAA
TTTTGGTGAAACAGTATCAATTGTCATGTGGAATGAAAACTGGAAACCTA
AAAGTTTCTTTGAAAAGATTGCTCAAAACAAAAAGCGAGGACTACACACT
CTTTGTCTCTTAGAGCAACAACACATACAGATTTGGTTATCAGAGCTGTA
GAGAAGAATATTAAGTATAAGATTATCCATAATGCTTCAATAATGAATGC
TGCTGGATGTTGTGGTTTACAGATACGATATTGGAAAATGCCAAGGAAAA
AGATGTCGTGTTTCTAGTTGTTGGTGACCCACTTGGGAACAATTTTATGG
TCGTGAAGTAATCCTTGCAGATAGAACACTTGTTGAGCAAGAATCAGATG
TTATACTTGATTGGATTGGGACTTGGTGATGCTAAAGATATTACTGTGAA
AGGATTGGAAGCTGTTAAAAAAGCAGATCAAGTCTTTTTGGAAGCTTACA
CATCAATTTTAACTGGAGGAAAAGAAGCTTTGGCTGGATCACAATGTATG
GTTGATCACGGAAGACAGTTTTTGTGTTGCACTTGCTCGTATTGGTTGGG
AAGATCAACAAATATTCAGTGGGGCCGTAAAATATATGAACCACCAAGGT
ACTTAACAGCTAATGATGCAATTCAACAAATATTGGAAATTGTTCAATCA
GGGGATGAAGAAATAGAAGGGAAAGATTATATCAAAGTAAAAGAACAGAG
TGTGGAAAATATGATGAGCTGTATAATTTTGGTGAAACAGTATCAATTGT
CATGTGGAATGAAAACTGGAAACCTAAAAGTTTCTTTGAAAAGATTGCTC
AAAACAAAAAGCGAGGACTACACACTCTTTGTCTCTTAGAGCAACAACAC
ATACAGATTTGGTTATCAGAGCTGTAGAGAAGAATATTAAGTATAAGATT
ATCCATAATGCTTCAATAATGAATGCTGCTGGATGTTGTGGTTTACAGAT
ACGATATTGGAAAATGCCAAGGAAAAAGATGTCGTGTTTCTAGTTGTTGG
TGACCCACTTGGGAACAATTTTATGGTCGTGAAGTAATCCTTGCAGATAG
AACACTTGTTGAGCAAGAATCAGATGTTATACTTGATTGGATTGGGACTT
GGTGATGCTAAAGATATTACTGTGAAAGGATTGGAAGCTGTTAAAAAAGC
AGATCAAGTCTTTTTGGAAGCTTACACATCAATTTTAACTGGAGGAAAAG
AAGCTTTGGCTGGATCACAATGTATGGTTGATCACGGAAGACAGTTTTTG
TGTTGCACTTGCTCGTATTGGTTGGGAAGATCAACAAATATTCAGTGGGG
CCGTAAAATATATGAACCACCAAGGTACTTAACAGCTAATGATGCAATTC
AACAAATATTGGAAATTGTTCAATCAGGGGATGAAGAAATAGAAGGGAAA
GATTATATCAAAGTAAAAGAACAGAGTGTGGAAAATATGATGAGCTGTAT
AATTTTGGTGAAACAGTATCAATTGTCATGTGGAATGAAAACTGGAAACC
TAAAAGTTTCTTTGAAAAGATTGCTCAAAACAAAAAGCGAGGACTACACA
CTCTTTGTCTCTTAGAGCAACAACACATACAGATTTGGTTATCAGAGCTG
TAGAGAAGAATATTAAGTATAAGATTATCCATAATGCTTCAATAATGAAT
GCTGCTGGATGTTGTGGTTTACAGATACGATATTGGAAAATGCCAAGGAA
AAAGATGTCGTGTTTCTAGTTGTTGGTGACCCACTTGGGAACAATTTTAT
GGTCGTGAAGTAATCCTTGCAGATAGAACACTTGTTGAGCAAGAATCAGA
TGTTATACTTGATTGGATTGGGACTTGGTGATGCTAAAGATATTACTGTG
AAAGGATTGGAAGCTGTTAAAAAAGCAGATCAAGTCTTTTTGGAAGCTTA
CACATCAATTTTAACTGGAGGAAAAGAAGCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041004XLOC_041004Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065428-exon-scaffold_439-1575043694:420932..421104TCONS_00065428-exon-scaffold_439-1575043694:420932..421104Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1575043694:420563..420623TCONS_00065428-exon-scaffold_439-1575043694:420563..420623Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1575043694:420268..420331TCONS_00065428-exon-scaffold_439-1575043694:420268..420331Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1575043694:419868..419976TCONS_00065428-exon-scaffold_439-1575043694:419868..419976Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1575043694:418235..418355TCONS_00065428-exon-scaffold_439-1575043694:418235..418355Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1575043694:417610..417649TCONS_00065428-exon-scaffold_439-1575043694:417610..417649Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1575043694:417207..417313TCONS_00065428-exon-scaffold_439-1575043694:417207..417313Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1575043694:416918..416986TCONS_00065428-exon-scaffold_439-1575043694:416918..416986Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1575043694:414219..414240TCONS_00065428-exon-scaffold_439-1575043694:414219..414240Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1510915933:420932..421104TCONS_00065428-exon-scaffold_439-1510915933:420932..421104Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1510915933:420563..420623TCONS_00065428-exon-scaffold_439-1510915933:420563..420623Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1510915933:420268..420331TCONS_00065428-exon-scaffold_439-1510915933:420268..420331Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1510915933:419868..419976TCONS_00065428-exon-scaffold_439-1510915933:419868..419976Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1510915933:418235..418355TCONS_00065428-exon-scaffold_439-1510915933:418235..418355Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1510915933:417610..417649TCONS_00065428-exon-scaffold_439-1510915933:417610..417649Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1510915933:417207..417313TCONS_00065428-exon-scaffold_439-1510915933:417207..417313Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1510915933:416918..416986TCONS_00065428-exon-scaffold_439-1510915933:416918..416986Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1510915933:414219..414240TCONS_00065428-exon-scaffold_439-1510915933:414219..414240Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1491911889:420932..421104TCONS_00065428-exon-scaffold_439-1491911889:420932..421104Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1491911889:420563..420623TCONS_00065428-exon-scaffold_439-1491911889:420563..420623Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1491911889:420268..420331TCONS_00065428-exon-scaffold_439-1491911889:420268..420331Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1491911889:419868..419976TCONS_00065428-exon-scaffold_439-1491911889:419868..419976Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1491911889:418235..418355TCONS_00065428-exon-scaffold_439-1491911889:418235..418355Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1491911889:417610..417649TCONS_00065428-exon-scaffold_439-1491911889:417610..417649Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1491911889:417207..417313TCONS_00065428-exon-scaffold_439-1491911889:417207..417313Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1491911889:416918..416986TCONS_00065428-exon-scaffold_439-1491911889:416918..416986Clytia hemisphaericaexon
TCONS_00065428-exon-scaffold_439-1491911889:414219..414240TCONS_00065428-exon-scaffold_439-1491911889:414219..414240Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065428-proteinTCONS_00065428-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:414219..421104 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.3587	12.4857	5.56159	5.47222	8.03459	4.17029	2.45146	4.73505	3.91086	1.64828	2.72842	5.20391	3.55095	1.21696	6.24442	7.43257	3.19752	9.32959	0	1.73057	6.18439	2.20527	14.2982	14.1314	8.24971	3.78768	3.88447e-07	1.98444	13.7139	14.0582
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0147764pyrrole_Mease_sub2
IPR0008784pyrrol_Mease
IPR004551Dphthn_synthase
IPR0147774pyrrole_Mease_sub1
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0004164diphthine synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0017183peptidyl-diphthamide biosynthetic process from peptidyl-histidine
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine
molecular_function GO:0004164 diphthine synthase activity
molecular_function GO:0008168 methyltransferase activity
Blast
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BLAST of TCONS_00065428 vs. Swiss-Prot (Human)
Match: DPH5 (Diphthine methyl ester synthase OS=Homo sapiens GN=DPH5 PE=1 SV=2)

HSP 1 Score: 341.273 bits (874), Expect = 2.518e-117
Identity = 156/239 (65.27%), Postives = 202/239 (84.52%), Query Frame = 3 
Query:   39 MLYLIGLGLGDAKDITVKGLEAVKKADQVFLEAYTSILTGGKEALEQFYGREVILADRTLVEQESDTILENAKEKDVVFLVVGDPLGATTHTDLVIRAVEKNIKYKIIHNASIMNAAGCCGLQLYNFGETVSIVMWNENWKPKSFFEKIAQNKKRGLHTLCLLDIKVKEQSVENMMRGRKIYEPPRYLTANDAIQQILEIVQSGDEEIEGKD-LITEDSFCVALARIGWEDQQIFSGWI 752
            MLYLIGLGLGDAKDITVKGLE V++  +V+LEAYTS+LT GKEALE+FYGR++++ADR  VEQE+D IL++A   DV FLVVGDP GATTH+DLV+RA +  I Y++IHNASIMNA GCCGLQLY FGETVSIV W + W+P+SFF+K+ +N++ G+HTLCLLDIKVKEQS+EN+++GRKIYEPPRY++ N A QQ+LEIVQ  ++ I G++  +TE++ CV LAR+G +DQ+I +G +
Sbjct:    1 MLYLIGLGLGDAKDITVKGLEVVRRCSRVYLEAYTSVLTVGKEALEEFYGRKLVVADREEVEQEADNILKDADISDVAFLVVGDPFGATTHSDLVLRATKLGIPYRVIHNASIMNAVGCCGLQLYKFGETVSIVFWTDTWRPESFFDKVKKNRQNGMHTLCLLDIKVKEQSLENLIKGRKIYEPPRYMSVNQAAQQLLEIVQ--NQRIRGEEPAVTEETLCVGLARVGADDQKIAAGTL 237
The following BLAST results are available for this feature:
BLAST of TCONS_00065428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPH52.518e-11765.27Diphthine methyl ester synthase OS=Homo sapiens GN... [more]
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