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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065427 ID=TCONS_00065427|Name=TCONS_00065427|organism=Clytia hemisphaerica|type=transcript|length=1648bp
cGGAAAGTGTTTTATACTAATTTCAAGCTGAGGGGactaatattttagtt
cgaattagagagagttgactgtatgtCTAAAAACATCGATAATGAATGTC
TGATGATCACTCATTTCTCTTCCTTAGGTTACCATATGTGTCGTCATGTG
GACGAGATCAAACCCGTCCTGGAAAATCTACTCGGAAACAAAAAGGTCAC
CGGCAACGTATCGAGATTGTATGTTTGTTGCAGTTCAGCGTGCAGAGAAA
GCACCGTCCGAAGACCCCGTAAAAGaatcaAAGCGAATAAACAATTAAAC
AACAATGGATCATACATCATCATTCCTTGACACGGATGACATCATCTCAC
CGGAAACCAAACCGCCGCGTGCTCCAAAATGCGCACGCTGCCGCAACCAC
GGTGTGGTATCGTGGCTCAAAGGTCATAAGCGGTTCTGTAAATGGAAGGA
TTGTCCGTGTAGCAAATGTGTTCTGATTACTGAACGGCAACGTGTGATGG
CCGCTCAAGTGGCATTGAGACGACAGCAAGCTCAAGAAGAAAATAACCAA
GatgcaaaattaaaaatcaattataaAAGCTTTCATAGGAGTGAAAGTGA
AGATGGAAGCCAACCTGTTGTCCGTGGTGGTCAAAGACATGACTCCTCGT
CGGACAATATGAGTACATCTACCACATCTTCTTCATTACAATCACCAAAA
CACTCTCCCAACCCCATCATCAACCGCCAACCATCAGTTACAGAACAACC
TGAAAACAACGATGTTGACAATAACCAACCAATCACAAACAAATCATCCT
CAAAAACAATCAAATCTACACGCAGTGCTTTTAACACGTGTTCAAACTCC
AATAACAATAAATCTCGTTATCAGGCCTCCAAAAAAGATCCATTCGAAGT
GATCACTAAAATATTCCCTGATTTTGATTCGTACACACTTGCAGAAACTC
TACAAAATTGTCATGGCAACATATACCTTGCAGTTGAAGCTCTAGTTGCG
CTCAAAGATAAAACCAGAGTTGGCGTCCTTCCGCCTAGGGTGTACCACCC
AGTATATCTACCGCACCCTTACAGGCACCAGGTACCACCTTATGAAAGAT
ATCCGTACAAACCACCAAATTATATACCACACCCGGCATATTTTCGGACT
TCTGCAAAACCTCCTCATACATCATGCACAGATATTGACTGTTCTTGTTA
CAAGCACCATATCAAAGATAAGAAACAATCTTATCTTGAGACAAGGAAAC
GTTCCTTAGATGCTTTAATGATGTCGCCGAAACTTCGGGATGCTCACGCC
GATTATCTGACGTATCTCAAGTCCGTCAAAGAACTTAAGAGAATTGAGAA
AAGTAACCCAGTTTTGTATGTTAATGGTAAAAAACCTGTAACTGCAATGT
AATGCTTTTTCTATGGAATTTTAAGACCCTTAAATTTCTCATAAATCTGT
AatactttttgttatttttttagttGGTTATTAGATGAAATGCTAAAAAG
CTTCCTTGTAGTAAGGAATTCTGTTTGTAAGTTGAGTGTagagatttttt
atttctttgatgATTGTTGGTATGACAAGGTTTGCTtcatctttcatttt
attttgatttcctGATAGGTATACTTCTCTTAAGAACCTGATCTAACC Run BLAST on NCBI protein sequence of TCONS_00065427-protein >TCONS_00065427-protein ID=TCONS_00065427-protein|Name=TCONS_00065427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MDHTSSFLDTDDIISPETKPPRAPKCARCRNHGVVSWLKGHKRFCKWKDC
PCSKCVLITERQRVMAAQVALRRQQAQEENNQDAKLKINYKSFHRSESED
GSQPVVRGGQRHDSSSDNMSTSTTSSSLQSPKHSPNPIINRQPSVTEQPE
NNDVDNNQPITNKSSSKTIKSTRSAFNTCSNSNNNKSRYQASKKDPFEVI
TKIFPDFDSYTLAETLQNCHGNIYLAVEALVALKDKTRVGVLPPRVYHPV
YLPHPYRHQVPPYERYPYKPPNYIPHPAYFRTSAKPPHTSCTDIDCSCYK
HHIKDKKQSYLETRKRSLDALMMSPKLRDAHADYLTYLKSVKELKRIEKS
NPVLYVNGKKPVTAM Run BLAST on NCBI transcript from alignment at scaffold_439:401633..413658- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065427 ID=TCONS_00065427|Name=TCONS_00065427|organism=Clytia hemisphaerica|type=transcript|length=12026bp|location=Sequence derived from alignment at scaffold_439:401633..413658- (Clytia hemisphaerica)
CGGAAAGTGTTTTATACTAATTTCAAGCTGAGGGGACTAATATTTTAGTT
CGAATTAGAGAGAGTTGACTGTATGTCTAAAAACATCGATAATGAATGTC
TGATGATCACTCATTTCTCTTCCTTAGGTTACCATATGTGTCGTCATGTG
GACGAGATCAAACCCGTCCTGGAAAATCTACTCGGAAACAAAAAGGTACT
TTTTAGAAGTATTTAGACAAATAAATTCCATATTTTTCTCCGAATATAGC
GCGTGCCAAAGGTAAACGAACCTAATCATTACATGTCTAGATTAATCAAT
TATTTACAATTTCAATTACGTACATGTTTCATTTCATCCATAATTTGCAA
ATACCATCAAATTATTTTCATTCAGTTTGAATTTGAATCCATCTTTTCAA
ATAACACGTGCTAGGGAGTGCCATTTTTGTTAACATTTTTTGTCGCTTAG
CAACGAGATCTATGTATTTATAAATTAGGCACTTGATTAGCTTCTACTTT
TTAATTTTGTTTCAAAGGTCACCGGCAACGTATCGAGATTGTATGTTTGT
TGCAGTTCAGCGTGCAGAGAAAGCACCGTCCGAAGACCCCGTAAAAGGTA
CGAACACTGTTTTATTCTGATTTAAAATACTGGAAATTAAAGCTTTTATT
GCTAAAAAATCTACCCTTTAATGTAAGTGAAAAACACATGAACAATGAAC
CGTTATTAACTATTTGATTTAATTTTTCAACAACTTACGAATTAATTATC
TTTCGATTGAACAAAAGTTTTAAATATTTCGAACTCAGTGAGACAAATTG
TTTTTAGTAGGAGACAATCCCTTTGTCCCTAGCATCTTTCGTGGGACTCA
ACCGCATGTGATTGGTTTGAAAGTAGATAGGATTTTAAAACGTTTTGAGA
AGGGACCCGCGAATTGAGGTATTAAAAAAATACTTTTTGGACTAAACTTT
TTGGAAAAATCAGTTGAAAAATATGCAAATTGAAATGAGTGAACTTGAAA
AAGACACGTAAAGTGGTCGAAATATCGTGAAGGGAAAAAACAAATTGAAA
TGAGGATGTAGTTAGTGCAGGCAAAAAATGCCATCGAAAAAATTAATGAA
TATTTATCGGTTTTACGCTCCTGTATTACTACGTACAATCAATAAAAAGT
TATCTCAGCATTAGCCGATTTTATGTCGTAGGATAAAGTTTCTGCTACTG
TTCTTTTGTTCTCTTTTTTTCTGGTCACGTGACCGAGCTTTCAATTGAAT
CTTTTGTGTTGTCAAACTATTTTGAACGCTAATTTTTATTACGTCTTTAA
AGTTTGTTGCGTATGCATTTCTTGATTTCAAAGTTGCGTTGACATTTATC
CCTTTGAATTCATTTGAAATGATACTTTCAATATCTGCAGAACATTTGAA
ATTCCCATTGATGGAACCCTCGTACTTAGTTGGTAGAGTGTGTTTTGTCA
TTCCTTGTCTGGCGTCTTGTGATCAACTTTATGTGTCTTTTCGAAGTTGT
GCATTCAAGGAATTTTTAGACATGGCTTTAATTTTGCGATTTTAGTTAGT
TTACACTTGTTAACGAGTTAAGGTATATATTATTATCGAAAGAACTAGCG
TGGTCATGGAAAATAAAAAGATTCGTTTCTTTTTCTTTATTTTGCCGCAC
ACGTTTCATCAAAGTGTTTTAACCTCATTCCGTCGGCCAACAAAAACTAG
ATTGATGAATTTTTTATTCAAGCTTAGTATAGGGTTACATTTAATACGGG
ATACACATCGGTGTAGATCCGGGTTGGGTACCAGGGTTGCGAGGTGAAGT
GTATGTACCGCTCAACTGACGACCCTTGGACTTTTAAGTCTTAGCGGGAC
TAAAAATGTGGGAAAATAGGGGATTTTGTGAAATTTACGATCCTCATTTG
ACTAATTTGACCTAATTTCGAGATTTCAAGGAGCAAAAAGTTGAAATTTC
CCCATTTTCCTGACCCTTGGTGGAACTGAAATTTAATATTTTTAAAGATT
CTTCCAACCCTTACATGGATCTAAGGTTACTAATAGGCATCCTTAATGAC
GGTACATACCCGTACCCTTCACTTGTCTATGCACCCCCGGGAGTGTAGAT
TTCCAAAATTGTTAATATCTCCATTAATACAGGGGCTGTTTCAAAGGCTT
CGAAATGTTGTTTGAAAGAACTCTACCTCCCTTTCAAACACGTAGGGCTG
TGTTTCAATATGTTTTTAATAATTACTATATCTTAAAACTTTTTCACACA
ATCCAAAAATATCAAAGTGTAAGAATATCGGTTAGTCTTTCAGAAAGGAT
ACAGTAGAAAGTTGTCACCGCTTACAAATGAAAACTTTCCCATTGCTTGA
TTGATACAGTAATTTTTGTTCTTTTATTTACATTTCACAAAGAGGGGGAA
GTTATCCGTAGGTTAATTAGGTAAAGGGTTTCACCTAAAAGAAGGGATCT
TTTTTGTAACTGTTATTAAATGTCTTTACAATCTCAGTTTACGCCGTCGC
CTTTCTAAAGGGAACGAGAAAACGATGAAAAGTTGAGACGAATCAAGGTA
TCTGGTTACACCCTACACTTGGGTGTGATTTTGTTATCTTTTGTGTCTAT
CCCCCTTTTTTCTTGAGTTGAATATCGGCCCCCTTTTTTGACATTTTGTC
TATTTTTCTGTTTGTTTCTTTTTGTTATTGTTTTATTCTATTGTACTGTA
TATGATCTTAATTTCTGCCTCTTTTACCGCTTTTGATCATTGAAACATGT
TACATTTTTATATTATTTTTGCCAGCCAGCCGGACTTTTTTAATATCTAA
AAGTTTCCAAATCTAAAAGAGACGATAAAAAGAGTTGTGTATTAAAAGTA
GCTTCTTAAGCTTTGAAGGACCGTTTTAAAATGATATATTGGCAACATAG
GCACATTGTTTACTTTTTGTAACCACGCATCACTGGAAGGGTAACTATGC
TTTTGAAAAGGTATCTATTTAACACCCCTGTCTCAGTAAACCGGCGGGAA
TATTTTAGCACTTAGGAATAAACCTAGAGGTAGAAACTCTCCTGTTTAAG
AATGTGGGGTCTCAAATTTTGTTGTTCAAAATTCAAAAGTCACGTGGGAA
TTCTTAAAGCTTTAAATACTTTCTCTCCCAGTGGGGATGAGAGAATTTTA
AAGGTGTTTTCTTCGTTGAGGATTGGTATTTGGCACGGTGGTTTAATTCA
GTGAACTGAAAATGAAATTAAAGTCAAAATGAGCTTGTCGAATTCAAAAT
TTTGATTACTGATAGTTTACTTAACATTTACAAAAATCTGTTATTTTTGG
TTTTAAATTCTACGACATTACAAAATTAAAATCTGTCATTTGAAAAAGTT
CTACTTTTTCACAGAAATAACGTTAATTTGTTACAATGTAATAATTTTCT
ACAAAAGCAATATTTTGAAAGAATTTTTGAATCACAATTGACAATTTTTC
GGGAAGTTCAATAGTCGGACGGGAGCAACTACTTGCTCACCCAAGACTGA
TCACCTTCTTTGTCTGCAGTAGTTTCATGGCCATTTCGCCGATCTCAGTA
AGTCAGTAAGAAGAATTAGCAGTGGGAGAGTGGATATATTTGAGACATTT
ATTACTTTTTTTGGAGTTACAGCTAGTAGCGAAAATTCTTTTGTCGATGC
ATGTTCTATTTGATTGATTTTTCAAAATAAGAAATAATCGAAAAATTGCA
TACCGTCAAGTCACCAAGATTCCACTGGTCACTCTCATACGTAAAAGACC
AGCGATTTTCCTTACTTGCACATTAGCTATTTTCCATGTCTTTATTATTA
ACACATAATTTTCTCAAGCACTTAGCTAACCCAGAGGAAACCTTTGAAAC
ATCTCGGGAAAGTTAGTTGGTTCTTAGTTCGGCATATTGATCTCGCCGAT
TTCCATCAAACTCAAGTCCTTCTCTAATGTCAGAGGCCAAATGTGTTCTT
TAATATTAGTGGCTGAAAAATTGGTTAAATAACAAATGAAATATTACACA
CTTTCTTGGATAAAAGCTATTTTTTACAGCTCTAGAAATTACCCTTTACC
ATCTTCAGCCGATTAGCCCAAGTAAAACAGGACAAATAAAACATCCTAGA
AAAGTCACTGCAATCTTAGTTCGGGAATTGAAATTTTCAGTACGACGATG
GTATCGCTCCGTCAACGCTCTCCATTGAACTCCTCCACTAAAGAGCTCCA
AACGTGTTCTTTGATATGAGTGGCTGACAACAACAATAGTAGAAGAATAG
ACAATATTGATGACCAAAGCTAAAGAACTGGTTAGATAACAAATAAGATA
TCACACTCTCCTGTCATTCCTTACAATTATTTCATTACAAAGTCGCATAT
CTTTATGTCGCAAAAAAGTTTTTTCAATGTATTTTTGTTATTATTATTAT
TTTTTAACTTGTGTTGAAATTTAAGTACTTTGCCTCTAACATGTTACTTT
CTTTTGATTATTTGACGATGCGATTTTTTTTCTGTTATATAGTAGCGATT
TAATAATTTCGTTCTTTGTTGAAATGCATTAATGCCGACTTGCTGTTTAT
TAAAATATATGTAGCTACTGTTACATTTTTTAATTTTCAAAAAATGTTGG
TATTGGTACCTTGTCGAGCGCTTTTGAAAGAATGGGAACGCCGCTATAGA
ACATGGATAATGACCAAAAATTTACTTTAGTATCTCTCTAAGTGCTGACT
GTGCTCGTGGTTCAAGGTCCCTTTATTATATAGGTTATCTAAATGTTTCC
CCGCTGTTCTATTTGTTCGTTACTTCTTTTCTTTATTCCCTTTCGGTTCG
TTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTT
CGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTGGCTTATTTA
TTAGTTTGTTGCTTCATTCACTGCTTTTGTCCGTTAACTCATTTTACGAT
GTCTGAATAAATTGGACAATTATATTTCTATCGACTTTAGGTACTAAAAA
GCGCACGAAATTTTGCATTTTACGAGGCAGCACCTTAAGAAATGAAGTCC
TAAAACTTTTTTATCATCGGCCCATAGCGCATTTTCAGGACCGTCACCAA
TGCTCTTTTCTAAATGATACCATTTGGTCATTTCGGGGAAATATCCCTGT
ATTGAATGAGGGGTTCTGTTCTTGGATGATTTTAAAGTAGACTTTCTGGT
CCGCTTTCACTTATTAAAAAGAAATTCTATAAAAGTTAATCACTAAAATA
AATGATAATAATCTTACAATTTCATTTAAATTTGGAAACAAAGTTTTTCG
CTTAATTCTTCTCTTTTTATTATCTTATGAAATATATTTTTTAATAAAAT
TTGAAATATTTTTTTTGCTCAACACCGCAACTGTATTAAGTAACATCTTA
ATCATTAGAAAGTCTCTTTCACTAGATACGAGTTTAATCAGTGCTTGATT
GATTTTACATTAGATATACATTGTCTTCCACGAAAAGTGTTTCCTTTTAA
TCTCTTAAGCGTGATCTTCAAATTGTGTTCAGGTTTAACAGACGGCTTGC
TCTGTTTTTTCTTCTCTTTTCTTTTTTATTCATTTCATCAAAATCAAGTT
TTGATTTTTGAGCGGATTAAACTTAGTTCCCCTTTTGTACCCTTGCTCAT
TGCTTCATGTGGTTGCCTCTGTAGAGGAAATCCCTCAGTTATCAATCCTT
TTGATTAAATCATCTTGCGAAAGAAAAAGCCGTTAAAAATGACCAGACTT
ATAGTGGAAACATTGAGTGTTGGTTTAACGCCTCGGTGGATCAAGTAGCT
CTGTAAGCTCCATTTGTGGAGCATTTTGCCAGAAGTCTTTTTTAACGAGC
ACTCTCAAATTTGGTGATGAGCTCTAGCACACTGTTTAACCAAAAGACAT
CGCCGTATTCGAACCTTTATGAATGGTTTATGACAGATTGGGTTCAAGTT
TATTATCTGCTGGGTTGTAATTTGAAGTTAACTGAATTCTTTGTGTGAAG
GGGGGTAAATTTGATGCTTGTAAGTTTAATGGGGAATCAAGGTAACGGTT
AAATCATAAGTTCGCCCAAACTATAATAACCCCCCCCCCAAGCGGAATAA
TGATGATGGTTCGATTTTCTTAATTTTCTTTTGTCATTGATCGGAGGATT
GTCTTTGCTTTCCTAGGTTCTATTCAACAACTGTAATATATCGTTACCTT
CAAAGTAATATGACTTTTTTGCTGCGACAATTGTACAATTGTAAGAACAA
TTGTAAGAATAAGAGGCTCAAAATCAATAGAAAATAAGAACAATTTGTAT
CAATGCTGGAAAGAAAGGTTCAAATCAGTAAATTAGTATTAGAATAATTT
CAACTCGAAGTGCTGGTACTGACTGGAACAGCGGAGCCTAAGCAAAAATT
TACTGGATTTTTTTTCTCCAAAAATTCTGCTGTTTAGATATGAACATCTC
CAGTTACTGGCGCTTTCAAAACAGACAAGAAAAGTAAAGAAATTGGTCAA
ACAGAACAGATAATTAATAAAGCAAGCTGTCTTCATGCAAATGTCACGTC
CAAGAGGCGCTAAATTTCAAAAAAAAGATAGTTCGAAAATCGAAAAATGT
TTTTCACTTGAAAAGAATTTTTTCAAAAATATCACTTAAGTGTGACATCC
ATTTTTTTGCTACTTCAATCTTTTCTAAAAGGTTTTTTTGATGCTTACTC
GTATTACACTCCATCTGACCCCTTTAAAACACTTTGTATCCAAAAAGGAA
AAATATAATAATGATCTGAAAAGGTTCGGAACCCTTTCCCGCTATTCAGT
TTTTATTTAAACAAATGCTTTTTTTCCTAATCGACCTTTTCTTTCCTTTT
GTGTGATTGTATATAAATGTAACGATCAAATATGGGACAACGCCTTGTCT
GACTTTCTTGAAGGAGTGACTGTTGGTGACTGGTTGTCAATATTATATAG
ATATATAGCTAGAGGACGTTTATCTGATTGCGATAGCTATTTTTGCAATT
GAAAACAGAATTTTTTATGCATTGAAATTGAAAGTTATGTATTTGAAAGG
TGTCCATTGCTGACCGTTCGTCGATATACAGTGACCCCGCGAGGGGCACT
CAAGGTAAATTACCTACCATACGTGCGGCCCTTAAGGGTCCCTTTTCTAA
GCTTCCCAAAGTGCACTGTAAGGGTCGAAATCAGCAAAGATGAGAAAAAG
TACACTATAAGGGTGAACATTTTGAAAATCTGACCAAATCTTCAAGAAAG
TGCACTGTAAGGGTACTAGATTTTTCACCTAAATTTACTCAAATTTGGCT
AAATTTTCTCTGCACTGAAGAATCCGATTTCAAAGGCCTAAATTTAGTTT
GGTTTGTACGTATAGTCGTTTTTGAATCAATCAAGTGCCCCCCCCCCCCC
CCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCGGACAG
TGACTGGAAAATTCATATGATTTCGTTTTACAATCTTAAGATTAGTTTAA
GATGCCGATACTCCAAATTCCTTCACATATCAGTGTTTGTGATGAAGAGG
GCGAAAGTTAAGACAAGAAAAATATACTCAATCTTTTTATTCACCAGATC
GACAATTTCACTATCGAAATCTGGCATTTGATTTTACGCTACTGTGCCAA
ATAATTTTAAAGATAGACCGATTTTCTGGTGTCTGGGAAAGTTCTGATTA
CTTCATTTCGCTGGCAATTAGCGGTTAAACCGCGAAAAGTTAAATCGCAA
AAATCCTCCTCTCTTTCCTATGCTAAAAGAAAGAGAAATTTTTCAGACCG
CTAAATTGTTCTTTAAATTACAAATCCTTAAAAGTCGGGATTTCATTATC
AATTTAGAGACTGTCAGTAAACCAGCTTAAACTGTGTCTTTAGCCTACTG
ATGTAATGTAGATTTTTGGCTATAAATACGTGAATTTTCATTGGAATTCT
TCGACAGATATATCCATCCTTAGACAAATTGTGAATGATTTATTTTGTGT
ATTGTCTAGTTAATTCCTGGCCATTGCCATCATTGCTACTAATTTTCTAG
TAAAGCTAAAAAGCCCGATAATAACAGATATATAACGCATGGATAGAATA
GATATTGAGCCGAATTTATGTTCTCTGGAACAAAATAAAAGCGAGTCAAG
TTTTGTCATCAAAATTGGTACCTTGTGACGTTTTGATTTATATTTTCATT
TTTCTATTCTTCTTTGAAGATTTTCAAATCTTTCTGGATCTTCTCGTTGT
GTACTTTTGATTAAATGGATATATGTGAGACTTTTCAATCATTTTCTTTT
CTTAACATAAATCTTAACTGAACTCAAAGAATCTTAACTAACAAATCTTT
CCTACCGCAAGAGATAAAGCTTGGGTTCAGAGGCCACAAGACAATTAAAC
TGACGCCAAGAGAATTTGATTTTCATTCCTTGTTTTGACCAAATCGTCAT
TTTTTCTTGTTTTTTTTATGAAATACATCGGCAGTTTATTCTGTCATGAT
GCGATGAAGAATCCAAAAATCCAAAAAAACAATTTTGGATGAGTATTAAA
TCAGATTTTTTATTCATTTCGTGACAATCTAATTGGACTTTGATATAAAG
TCCTAGATTTTGTTTAAGTTTGAGTTTTTCTTCTTTTTCGACCGTGATTC
TTTCAAATTTTTGTTTGATTTTGATTTAAAGTCTTATTTTTCCCTAAATT
TGTTAATCTTTAAGAGTCTTAACGTGAAAAATAGATATATACAACACAAA
ATAATACGCTGGTCCCCTTTTTTGATAAAGCATAATCTATTGTTTACAAA
TAATAGGGAAAAGGGGACAATACTTTTAGTCTTCTCTGTTTCTTATTTCT
ATTGTGATACTAAAAGATATATAAATGATTNGTTCATTGGAATTCTTCGA
CAGATATATCCATCCTTAGACAAATTGTGAATGATTTATTTTGTGTATTG
TCTAGTTAATTCCTGGTCATTGCCATCATTGCTACTAATTTTCTAGTAAA
GCAAAAAAGCCCGATAATAACAGATATATAACGCATCCGGATAGAATAGA
TATTGAGCCGAATTTATGTTCTCTGGAACAAAATGAAAGCGAGTCAAGTT
TTGTCATCAAAATTGGTACCTTGTGACGTTTTGATTTATATTTTCATTTT
TCTATTCTTCTTTGAAGATTTTCAAATCTGTCTGGATCTTCCCGTTGTGG
ACTTTTGATTAAATGGATATATGTGAGACTTTTCAATCATTTTCTTTTCT
TAACATAAATCTTAACTGAACTCAAAGAATCTTAACTAACAAATCTTTCC
TACCGCAAGAGATAAAGCTTGGGTTCAGAGGCCACAAGACAATTAAACTG
ACGCCAAGAGAATTTGATTTTCATTCCTTGTTTTGACCAAATCGTCATTT
TTTCTTGTTTTTTTATGAAATACATCGGCAGTTTATTCTGTCATGATGCG
ATGAAGAATCCAAAAATCCAAAAAAACAATTTTGGATGAGTATTAAATCA
GATTTTTTATTCATTTCGTGACAATCTAATTGGACTTTGATATAAAGTCC
TAGATTTTGTTTAAGTTTGAGTTTTTCTTCTTTTTCGACCGTGATTCTTT
CAAATTTTTGTTTGATTTTGATTTAAAGTCTTATTTTTCCCTAAATTTGT
TAATCTTTAAGAGTCTTAACGTGAAAAATAGATATATACAACACAAAATA
ATACGCTGGTCCCCTTTTTTGATAAAGCATAATCTATTGTTTACAAATAA
TAGGGAAAAGGGGACAATACTTTTAGTCTTCTCTGTTTCTTATTTCTATT
GTGATACTAAAAGATATATAAATGATTTTAGTAACATTTTTGACACTTTT
TTATTTTGAACAATCTTGTGAACTTGAATTTCAAGTTGTGGAAACAGTTT
TTTTATTCAAAGCATGACAATGATTTTAATGACTTTGGTGTCCTGTCGGT
CCTAAACGTCCGAAGAAACGAAGGTTTCTCGACACTCTAAAGCGGGAAAC
ATAGGCCTGGAAACGCTAGAGCTCGGAACAGTTATGACTGATCGTAAACT
GTGGAGAGAGGGTTATTGCTTGTTTCCGATGATGGTGATGAATGACTTTG
ATGTTTTTAAATTTGAATTCAAAATTTCTTCATTTTCAGAATCAAAGCGA
ATAAACAATTAAACAACAATGGATCATACATCATCATTCCTTGACACGGA
TGACATCATCTCACCGGAAACCAAACCGCCGCGTGCTCCAAAATGCGCAC
GCTGCCGCAACCACGGTGTGGTATCGTGGCTCAAAGGTCATAAGCGGTTC
TGTAAATGGAAGGATTGTCCGTGTAGCAAATGTGTTCTGATTACTGAACG
GCAACGTGTGATGGCCGCTCAAGTGGCATTGAGACGACAGCAAGCTCAAG
AAGAAAATAACCAAGATGCAAAATTAAAAATCAATTATAAAAGCTTTCAT
AGGAGTGAAAGTGAAGATGGAAGCCAACCTGTTGTCCGTGGTGGTCAAAG
TAAGATGTCTTATCATATTGCCAATTCAATTACAGAGGAGTCTCTTCGTC
TCTTTAACTCGAACCTCTATTACTCGAATGTCTCCGTAATTCGAACTAGT
TTTATGGTCCCTTTAGTTAACAATGTCTTATAAACCTTACTCCATAAGTC
GAAAGTTCCTTAACTCGAACAAACTTGTATTCCCCGTGCGTGCTCAAGTT
ATGGAGACTCCAATGTACTTAAGGTTTCAAATCGGATGCCCTGCATGTAG
TTCTATTACGGTAATTTATGTTTGCACCAATAATTAAATAAGTTCAAAAT
AATGAGAATAGTTTCCACGGATATATTATTGAATCAGATTTCTGACAGAC
GAGAAAGTTCGTGATTAAAATTTTAAACAGTTTTAAAGCACCACTTTAAA
ATCGTGAATACAACGACGGTTTAGAACGAATTGAGGTAGTGCTAGAATCG
TCTTTTACTCAAAATCCAAACAAATTTACACATAACTTAAGGGTATAACA
TTATTCTATGTAGGACATGACTCCTCGTCGGACAATATGAGTACATCTAC
CACATCTTCTTCATTACAATCACCAAAACACTCTCCCAACCCCATCATCA
ACCGCCAACCATCAGTTACAGAACAACCTGAAAACAACGATGTTGACAAT
AACCAACCAATCACAAACAAATCATCCTCAAAAACAATCAAATCTACACG
CAGTGCTTTTAACACGTGTTCAAACTCCAATAACAATAAATCTCGTTATC
AGGCCTCCAAAAAAGATCCATTCGAAGTGATCACTAAAATATTCCCTGAT
TTTGATTCGTACACACTTGCAGAAACTCTACAAAATTGTCATGGCAACAT
ATACCTTGCAGTTGAAGCTCTAGTTGCGCTCAAAGATAAAACCAGAGTTG
GCGTCCTTCCGCCTAGGGTGTACCACCCAGTATATCTACCGCACCCTTAC
AGGCACCAGGTACCACCTTATGAAAGATATCCGTACAAACCACCAAATTA
TATACCACACCCGGCATATTTTCGGACTTCTGCAAAACCTCCTCATACAT
CATGCACAGATATTGACTGTTCTTGTTACAAGCACCATATCAAAGATAAG
AAACAATCTTATCTTGAGACAAGGAAACGTTCCTTAGATGCTTTAATGAT
GTCGCCGAAACTTCGGGATGCTCACGCCGATTATCTGACGTATCTCAAGT
CCGTCAAAGAACTTAAGAGAATTGAGAAAAGTAACCCAGTTTTGTATGTT
AATGGTAAAAAACCTGTAACTGCAATGTAATGCTTTTTCTATGGAATTTT
AAGACCCTTAAATTTCTCATAAATCTGTAATACTTTTTGTTATTTTTTTA
GTTGGTTATTAGATGAAATGCTAAAAAGCTTCCTTGTAGTAAGGAATTCT
GTTTGTAAGTTGAGTGTAGAGATTTTTTATTTCTTTGATGATTGTTGGTA
TGACAAGGTTTGCTTCATCTTTCATTTTATTTTGATTTCCTGATAGGTAT
ACTTCTCTTAAGAACCTGATCTAACC Coding sequence (CDS) from alignment at scaffold_439:401633..413658- >TCONS_00065427 ID=TCONS_00065427|Name=TCONS_00065427|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at scaffold_439:401633..413658- (Clytia hemisphaerica)
GACATGACTCCTCGTCGGACAATATGAGTACATCTACCACATCTTCTTCA
TTACAATCACCAAAACACTCTCCCAACCCCATCATCAACCGCCAACCATC
AGTTACAGAACAACCTGAAAACAACGATGTTGACAATAACCAACCAATCA
CAAACAAATCATCCTCAAAAACAATCAAATCTACACGCAGTGCTTTTAAC
ACGTGTTCAAACTCCAATAACAATAAATCTCGTTATCAGGCCTCCAAAAA
AGATCCATTCGAAGTGATCACTAAAATATTCCCTGATTTTGATTCGTACA
CACTTGCAGAAACTCTACAAAATTGTCATGGCAACATATACCTTGCAGTT
GAAGCTCTAGTTGCGCTCAAAGATAAAACCAGAGTTGGCGTCCTTCCGCC
TAGGGTGTACCACCCAGTATATCTACCGCACCCTTACAGGCACCAGGTAC
CACCTTATGAAAGATATCCGTACAAACCACCAAATTATATACCACACCCG
GCATATTTTCGGACTTCTGCAAAACCTCCTCATACATCATGCACAGATAT
TGACTGTTCTTGTTACAAGCACCATATCAAAGATAAGAAACAATCTTATC
TTGAGACAAGGAAACGTTCCTTAGATGCTTTAATGATGTCGCCGAAACTT
CGGGATGCTCACGCCGATTATCTGACGTATCTCAAGTCCGTCAAAGAACT
TAAGAGAATTGAGAAAAGTAACCCAGTTTTGTATGTTAATGGTAAAAAAC
CTGTAACTGCAATGTAAATGGATCATACATCATCATTCCTTGACACGGAT
GACATCATCTCACCGGAAACCAAACCGCCGCGTGCTCCAAAATGCGCACG
CTGCCGCAACCACGGTGTGGTATCGTGGCTCAAAGGTCATAAGCGGTTCT
GTAAATGGAAGGATTGTCCGTGTAGCAAATGTGTTCTGATTACTGAACGG
CAACGTGTGATGGCCGCTCAAGTGGCATTGAGACGACAGCAAGCTCAAGA
AGAAAATAACCAAGATGCAAAATTAAAAATCAATTATAAAAGCTTTCATA
GGAGTGAAAGTGAAGATGGAAGCCAACCTGTTGTCCGTGGTGGTCAAAGA
CATGACTCCTCGTCGGACAATATGAGTACATCTACCACATCTTCTTCATT
ACAATCACCAAAACACTCTCCCAACCCCATCATCAACCGCCAACCATCAG
TTACAGAACAACCTGAAAACAACGATGTTGACAATAACCAACCAATCACA
AACAAATCATCCTCAAAAACAATCAAATCTACACGCAGTGCTTTTAACAC
GTGTTCAAACTCCAATAACAATAAATCTCGTTATCAGGCCTCCAAAAAAG
ATCCATTCGAAGTGATCACTAAAATATTCCCTGATTTTGATTCGTACACA
CTTGCAGAAACTCTACAAAATTGTCATGGCAACATATACCTTGCAGTTGA
AGCTCTAGTTGCGCTCAAAGATAAAACCAGAGTTGGCGTCCTTCCGCCTA
GGGTGTACCACCCAGTATATCTACCGCACCCTTACAGGCACCAGGTACCA
CCTTATGAAAGATATCCGTACAAACCACCAAATTATATACCACACCCGGC
ATATTTTCGGACTTCTGCAAAACCTCCTCATACATCATGCACAGATATTG
ACTGTTCTTGTTACAAGCACCATATCAAAGATAAGAAACAATCTTATCTT
GAGACAAGGAAACGTTCCTTAGATGCTTTAATGATGTCGCCGAAACTTCG
GGATGCTCACGCCGATTATCTGACGTATCTCAAGTCCGTCAAAGAACTTA
AGAGAATTGAGAAAAGTAACCCAGTTTTGTATGTTAATGGTAAAAAACCT
GTAACTGCAATGTAAATGGATCATACATCATCATTCCTTGACACGGATGA
CATCATCTCACCGGAAACCAAACCGCCGCGTGCTCCAAAATGCGCACGCT
GCCGCAACCACGGTGTGGTATCGTGGCTCAAAGGTCATAAGCGGTTCTGT
AAATGGAAGGATTGTCCGTGTAGCAAATGTGTTCTGATTACTGAACGGCA
ACGTGTGATGGCCGCTCAAGTGGCATTGAGACGACAGCAAGCTCAAGAAG
AAAATAACCAAGATGCAAAATTAAAAATCAATTATAAAAGCTTTCATAGG
AGTGAAAGTGAAGATGGAAGCCAACCTGTTGTCCGTGGTGGTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065427-exon-scaffold_439-1575043694:413464..413658 | TCONS_00065427-exon-scaffold_439-1575043694:413464..413658 | Clytia hemisphaerica | exon |
| TCONS_00065427-exon-scaffold_439-1575043694:413062..413141 | TCONS_00065427-exon-scaffold_439-1575043694:413062..413141 | Clytia hemisphaerica | exon |
| TCONS_00065427-exon-scaffold_439-1575043694:403160..403519 | TCONS_00065427-exon-scaffold_439-1575043694:403160..403519 | Clytia hemisphaerica | exon |
| TCONS_00065427-exon-scaffold_439-1575043694:401633..402645 | TCONS_00065427-exon-scaffold_439-1575043694:401633..402645 | Clytia hemisphaerica | exon |
| TCONS_00065427-exon-scaffold_439-1510915933:413464..413658 | TCONS_00065427-exon-scaffold_439-1510915933:413464..413658 | Clytia hemisphaerica | exon |
| TCONS_00065427-exon-scaffold_439-1510915933:413062..413141 | TCONS_00065427-exon-scaffold_439-1510915933:413062..413141 | Clytia hemisphaerica | exon |
| TCONS_00065427-exon-scaffold_439-1510915933:403160..403519 | TCONS_00065427-exon-scaffold_439-1510915933:403160..403519 | Clytia hemisphaerica | exon |
| TCONS_00065427-exon-scaffold_439-1510915933:401633..402645 | TCONS_00065427-exon-scaffold_439-1510915933:401633..402645 | Clytia hemisphaerica | exon |
| TCONS_00065427-exon-scaffold_439-1491911889:413464..413658 | TCONS_00065427-exon-scaffold_439-1491911889:413464..413658 | Clytia hemisphaerica | exon |
| TCONS_00065427-exon-scaffold_439-1491911889:413062..413141 | TCONS_00065427-exon-scaffold_439-1491911889:413062..413141 | Clytia hemisphaerica | exon |
| TCONS_00065427-exon-scaffold_439-1491911889:403160..403519 | TCONS_00065427-exon-scaffold_439-1491911889:403160..403519 | Clytia hemisphaerica | exon |
| TCONS_00065427-exon-scaffold_439-1491911889:401633..402645 | TCONS_00065427-exon-scaffold_439-1491911889:401633..402645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:401633..413658 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043565 | sequence-specific DNA binding |
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00065427 vs. Swiss-Prot (Human)
Match: DMRT3 (Doublesex- and mab-3-related transcription factor 3 OS=Homo sapiens GN=DMRT3 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.747e-16 Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query: 350 PETKPPRAP-----KCARCRNHGVVSWLKGHKRFCKWKDCPCSKCVLITE 484
P ++PPRAP KCARCRNHGV+SWLKGHKR+C++KDC C KC+LI E
Sbjct: 14 PVSQPPRAPLQRTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCILIIE 63
The following BLAST results are available for this feature:
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