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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065415 ID=TCONS_00065415|Name=TCONS_00065415|organism=Clytia hemisphaerica|type=transcript|length=3711bp
tgctaacaaaaattgaagaaaaatttgttCTATCTTTGGAGAGAAAAAAT
AAGACCCCACTTTTCGATGCTCACTTTTCGATGCTCAGTTTTTCGAGTTT
AGCTGAGAGTTCTACTAAATATTTAGctgaagaaaattgaaaaacaatgc
TGCTGCTTTTACGCCCGAAGTTGAAAGAGAAACACCAAGGAGTGTTCGTG
ACGGACGTAGACAAAGCCTTCAAATCGTCTCCCTCTACGCCAACCAACGA
AACCAAGAAACCAAAGAAGTACGTGGTCGTATCACGAAGATCAAACATTC
GAAAGTACAGCGCTGACATTCCTACCACGGACGACGGTTTATCAACGGGT
CTCGAAACACGGTCCAAATCATTGGACACAAAACGTGCTCCGGCCGTTCG
GTCTCTGATACCGAAAACAAAGAAACACGAGAAGAAAGCGAATAATTTGC
CTCAGGAAACAGATATTGATTTAGAGGACGAAGCTTTTGAGACAGAGCCT
TNAATTTGCATCAGGAAACAGATATTGATTTAGAGGACGAAGCTTTTGAG
ACAGAGCCTTCAACCACTTCTACAGCGACTGCGATTGATGTTCCACCTCT
TACAGTCAAGGCCACAGCGGGCGTCCCTGCTGATTTTCCTGCCACGAAAG
ACGTAGAAACGAAACAGGATGCAGAAGTCGAACTACCTTCTTCCACGACA
GTTGAAGCAGTTATTGAAACGGTGGTCAAGCAAGTTACGGAGtctcaaaa
agaaataaaacctGTTGACGACACTACAGTGAGAGCTATTGATGAAGCTG
ATGTTAGCAAAATAGTGTCTAATGAACCGGCGACCGAAGGAAATACACCA
ACATCAGACACGAAAGTGGATAATATTGTAGAGTTGTTAAATGAAGCAAA
CAAAGGGTTAAACGACCAAGATTCATTATTAACACAAAGTGACAATAAGA
GATTTGTAATCACAGAGGAAATCATAAAGACAGACGTTGAGCAGGAAGTT
GAAAAAAGCCCTGAGATGTTATTGAACGGTATGAGAGTTCACGCTGATGA
GCCTGCTGCTCAGGAGTATGTGCAAACAGACTTACATATCTTACATATCG
ATCAAAGTGACGAGAGAATGAAACCAAAAGAGGTGATTGTAAATGTTCCT
ACCGGTCACATCAAAGCCACCATACAAGGCAGAGCAGTCGAGAAAAACAG
ACGAAATCGCGACTCCTGGGACATTCTAGCCGATGAGCCGAAATTGACTG
AAAAGTCACCAACAGACAATAAATTGGTAATCGAGAAAGGCTTGTTTAAG
CGAGAATCACACGTTAACGGTAATGTTATCGAACAGAAACATCTTTCGTG
GAACATTCTTGATCTAAAGGAACAAGATGAGAAACTTTTAGATGATTTCT
TTAAGAATGGTTATATGAACGAACCAGTCAATAAGCGAAACTCGAACGAT
ATTGGTTTCTTATTTGAGAAATACCAACGTGAGCGAGAAGCTCTGAAGAA
ACTACAAGAGAAAGAAACCAAACGATATTCGGTAGGAAGTatgagtgact
tcagtgaaatTTCATCTGTCTCTGATGACGAAGCACCGGAAGAAAGCCGG
AAACAGGGATGGTCCGATATTGAAGATCCGGAAATCTCCCTCAATAAAGC
CATTTCCGAAGGCATGGATTCAGACTTATTCAAACCGATTCAGAGAAGTG
GGAATCATGTTGACCCGTCTACACCAAAGGCCGAGACAGCTCCTTCTTCT
GCTTTTTCACCGGTACTGAGACGAGACGAGAACAAAGCAACTAAGCCGTT
CTCTCCTTCCAAACAGCCTTTGTCTCCTTCGAAAGGGAAAACAGAGGAGA
CCAAAATCAAACCACTACCAGAGCCGGTCAAACCAGATTTTGTTCCAGAA
GTATCGACTTTCAGTGAGGAGGACTTGGGAAGTATGGTAATGGCACAAGC
GGTATCAGCGGTCCGGAAACGCAGAGGAAATCGAGGTCGAGGTCGTAGAA
ACGTCAATGCAGAGCAACAGTTAGCATCTCAACCAGCACCAATCCCTGAA
ACAAAGACTCCAGAGATAACTGCACCGGTCAACACCGTCCCCCAATCACC
ACCCAAACCACCGAGGGGTATTCCTAAAACGACAGCAGCACCTGTATTCG
AAGTCTCAGTCGAAACAACACAAGTGGCTCCACTATcacaagaaaatgtc
caaaaattgAACGCAACTTTACCATTGGATCCAAAGCGAACAGACTCATC
ATCAAATTCAACTGAAGCAACAATCAAATCATCAATGCGTAAACCACTGC
AAGAACCTCCAATCACATTACCACGATCCTCTTCAGCTCAACGTATGAGG
GATCTCAACCAGAANGGAAGTATGGTAATGGCACAAGCGGTATCAGCGGT
CCGGAAACGCAGAGGAGGTCGGGGTCGAGGTCGTAGAAACGTCAATGCAG
AGCAACAGTTAGCATCTCAACCAGCATCAACCCCAGAAACAAAGACTCCA
GAGATAACTGCACCAGTCAACACCGTCCCACAATCACCACCCAAACCACC
GAGGGGTATTCCTAAAAGGACAACAGCACCAGTATTCGAAGTCTCAGTCG
AAACAACTCAAGTCGCTCCACTATcacaagaaaatgtccaaaaattgAAC
GCATCTTTACCATTGGATCGAAAGCGAACAGACTCATCATCAAATTCAAC
TGAAGCGACAATCAAATCATCAATGCGTAAACCACTGCAAGAACCTCCAA
TCACATCACCACGATCCTCTTCAGCTCAACGTATGAGGGATCTCAACCAG
AATTACCTCCCATCACCAAAGTCACCAAGACTGATACAAAAATCAGCCAG
TATGAACTTCCAAGCGCCTACTTCTCCAAGATTACAGCCGAAAGCTTTGA
ATCTGAACCAAACGCAATCACCGAAATCTCCAAGGTGGGAACCAACATCT
CCAAAATCACCAAGGATACAACCATCACCAAGATCAGCAAAGCATCTTAC
ACCAAGGGAATCAggtaACAAAAAGTTACGACCTGACTTCGCTAATGGCA
ACAATAATAACAACACGAGGAGTTACGACTACATTAATTCAATGCctgac
atttttcataaaagtaAACTAGCTTCTGGTGACATCGAATACTGCGAAGA
AGATTACAACAGTGAAGCCAGCCTAATGTCTGATATCGGAATCGATTCAA
CCTTTGAAGGATCTATAGTAGATGATCAGATGCTACTCTATCCTTCGCTT
CACACTAACGCAAATGATATCAGGAGCAAGGCTATGATAAATGAGTTTAC
CGACTCGAGCGGTGATGAGAGCTTTACTACAGAACAGACTGACCGTTTCC
GACAGCAAATACCAACAAGTGCTACGGAACGAACCGTATATTGCGGTTAT
ACCGGATGTTCACATAAACAAGTCATGGTCGGAAATGAGAAATCGAAGTT
CATTTCATGCAATTCGTGTTTTACTTGCTACTGCAGTAAGACCTGCAAAC
GCATGCATTGGTTGGATCACCGTAAGAGTTGCTTCTTCGGACGAATCAAT
GTTTACATTAAAACCATCGTTcgaaaatgtgaaaaagaaaacaaatttaa
CTCGTTCCTGAAAACGTTCGCATTGAAAAACTACCGCGCAATCGGTCGTG
GATGTGTTGTTTTGACATTCAACTCGCCAAGTGAAGCAAAGGAAATGACG
TCACAGAAANN Run BLAST on NCBI transcript from alignment at scaffold_439:258846..264129- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065415 ID=TCONS_00065415|Name=TCONS_00065415|organism=Clytia hemisphaerica|type=transcript|length=5284bp|location=Sequence derived from alignment at scaffold_439:258846..264129- (Clytia hemisphaerica)
TGCTAACAAAAATTGAAGAAAAATTTGTTCTATCTTTGGAGAGAAAAAAT
AAGACCCCACTTTTCGATGCTCACTTTTCGATGCTCAGTTTTTCGAGTTT
AGCTGAGAGTTCTACTAAATATTTAGCTGAAGAAAATTGAAAAACAATGC
TGCTGCTTTTACGGTAATATAAATATTTTCGACGATTCCTTTGAGATTGA
ATAAAATTTCGACACGCGACAGACTTCTATCCCAGTACTTTTACCCTAAA
ATATAGAAAGATAAAATCCTCTATCATTTGTCTTCTGTCTACAAATCATA
AATTGTCGATAATTTTATTTGCTCAAACCGTTTTGTCTTCACAGCCCGAA
GTTGAAAGAGAAACACCAAGGAGTGTTCGTGACGGACGTAGACAAAGCCT
TCAAATCGTCTCCCTCTACGCCAACCAACGAAACCAAGAAACCAAAGAAG
TACGTGGTCGTATCACGAAGATCAAACATTCGAAAGTACAGCGCTGACAT
TCCTACCACGGACGACGGTTTATCAACGGGTCTCGAAACACGGTCCAAAT
CATTGGACACAAAACGTGCTCCGGCCGTTCGGTCTCTGATACCGAAAACA
AAGAAACACGAGAAGAAAGCGAATAATTTGCCTCAGGAAACAGATATTGA
TTTAGAGGACGAAGCTTTTGAGACAGAGCCTTNAATTTGCATCAGGAAAC
AGATATTGATTTAGAGGACGAAGCTTTTGAGACAGAGCCTTCAACCACTT
CTACAGCGACTGCGATTGATGTTCCACCTCTTACAGTCAAGGCCACAGCG
GGCGTCCCTGCTGATTTTCCTGCCACGAAAGACGTAGAAACGAAACAGGA
TGCAGAAGTCGAACTACCTTCTTCCACGACAGTTGAAGCAGTTATTGAAA
CGGTGGTCAAGCAAGTTACGGAGTCTCAAAAAGAAATAAAACCTGTTGAC
GACACTACAGTGAGAGCTATTGATGAAGCTGATGTTAGCAAAATAGTGTC
TAATGAACCGGCGACCGAAGGAAATACACCAACATCAGACACGAAAGTGG
ATAATATTGTAGAGTTGTTAAATGAAGCAAACAAAGGGTTAAACGACCAA
GATTCATTATTAACACAAAGTGACAATAAGAGATTTGTAATCACAGAGGA
AATCATAAAGACAGACGTTGAGCAGGAAGTTGAAAAAAGCCCTGAGATGT
TATTGAACGGTATGAGAGTTCACGCTGATGAGCCTGCTGCTCAGGAGTAT
GTGCAAACAGACTTACATATCTTACATATCGATCAAAGTGACGAGAGAAT
GAAACCAAAAGAGGTGATTGTAAATGTTCCTACCGGTCACATCAAAGCCA
CCATACAAGGCAGAGCAGTCGAGAAAAACAGACGAAATCGCGACTCCTGG
GACATTCTAGCCGATGAGCCGAAATTGACTGAAAAGTCACCAACAGACAA
TAAATTGGTAATCGAGAAAGGCTTGTTTAAGCGAGAATCACACGTTAACG
GTAATGTTATCGAACAGAAACATCTTTCGTGGAACATTCTTGATCTAAAG
GAACAAGATGAGAAACTTTTAGATGATTTCTTTAAGAATGGTTATATGAA
CGAACCAGTCAATAAGCGAAACTCGAACGATATTGGTTTCTTATTTGAGA
AATACCAACGTGAGCGAGAAGCTCTGAAGAAACTACAAGAGAAAGAAACC
AAACGATATTCGGTAGGAAGTATGAGTGACTTCAGTGAAATTTCATCTGT
CTCTGATGACGAAGCACCGGAAGAAAGCCGGAAACAGGGATGGTCCGATA
TTGAAGATCCGGAAATCTCCCTCAATAAAGCCATTTCCGAAGGCATGGAT
TCAGACTTATTCAAACCGATTCAGAGAAGTGGGAATCATGTTGACCCGTC
TACACCAAAGGCCGAGACAGCTCCTTCTTCTGCTTTTTCACCGGTACTGA
GACGAGACGAGAACAAAGCAACTAAGCCGTTCTCTCCTTCCAAACAGCCT
TTGTCTCCTTCGAAAGGGAAAACAGAGGAGACCAAAATCAAACCACTACC
AGAGCCGGTCAAACCAGATTTTGTTCCAGAAGTATCGACTTTCAGTGAGG
AGGACTTGGGAAGTATGGTAATGGCACAAGCGGTATCAGCGGTCCGGAAA
CGCAGAGGAAATCGAGGTCGAGGTCGTAGAAACGTCAATGCAGAGCAACA
GTTAGCATCTCAACCAGCACCAATCCCTGAAACAAAGACTCCAGAGATAA
CTGCACCGGTCAACACCGTCCCCCAATCACCACCCAAACCACCGAGGGGT
ATTCCTAAAACGACAGCAGCACCTGTATTCGAAGTCTCAGTCGAAACAAC
ACAAGTGGCTCCACTATCACAAGAAAATGTCCAAAAATTGAACGCAACTT
TACCATTGGATCCAAAGCGAACAGACTCATCATCAAATTCAACTGAAGCA
ACAATCAAATCATCAATGCGTAAACCACTGCAAGAACCTCCAATCACATT
ACCACGATCCTCTTCAGCTCAACGTATGAGGGATCTCAACCAGAANGGAA
GTATGGTAATGGCACAAGCGGTATCAGCGGTCCGGAAACGCAGAGGAGGT
CGGGGTCGAGGTCGTAGAAACGTCAATGCAGAGCAACAGTTAGCATCTCA
ACCAGCATCAACCCCAGAAACAAAGACTCCAGAGATAACTGCACCAGTCA
ACACCGTCCCACAATCACCACCCAAACCACCGAGGGGTATTCCTAAAAGG
ACAACAGCACCAGTATTCGAAGTCTCAGTCGAAACAACTCAAGTCGCTCC
ACTATCACAAGAAAATGTCCAAAAATTGAACGCATCTTTACCATTGGATC
GAAAGCGAACAGACTCATCATCAAATTCAACTGAAGCGACAATCAAATCA
TCAATGCGTAAACCACTGCAAGAACCTCCAATCACATCACCACGATCCTC
TTCAGCTCAACGTATGAGGGATCTCAACCAGAATTACCTCCCATCACCAA
AGTCACCAAGACTGATACAAAAATCAGCCAGTATGAACTTCCAAGCGCCT
ACTTCTCCAAGATTACAGCCGAAAGCTTTGAATCTGAACCAAACGCAATC
ACCGAAATCTCCAAGGTGGGAACCAACATCTCCAAAATCACCAAGGATAC
AACCATCACCAAGATCAGCAAAGCATCTTACACCAAGGGAATCAGGTTTG
AAATAATTATGTTAACTTTTTCTATCTACTGATTGAGAAATTCTTCACGT
TTCGTTATAGTTCTTATGCGATGATAAGACATTAATAATGACCTAACATT
TATGGTTGGGATTAGAATAGGCTGTATTATATGTTATATTACATGAAATT
CTTTGGTCTTCATGTACAGAAAAAGATTAAGTTTTGGCACAAAGTACTTA
GTACTACGGTTAAGCTTTCTCATCCCCAGCTAAACTTTTCTATTACCACT
TAACAACGGAAACAGACTGTAACTATCGGTATGTGAAAAAGTAACTTCGG
TTTGTTAGATCAACGGATTAGAATAGGTGGATTAACTTCTCTCGTTGCTC
CCAAGAGAGATCCATTGTCTTCTCATTGTTACAAGAAAAATCTGTAAATG
ACTCTGCGCACTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCGTTT
AGTTTTTTCATTGTTTTTATAAGAACAATTTTCCAATTTATACAGTTTCG
AAAACGAATTTGTCCTATGATTCGATCAATTTTGATGATTATATTTTAAA
TATTTTAAATCCTGCACTTAAGTTTTAGCATCAACAAACGCTAGACCAGT
TTTAATGTAAATTTTTAATCTTTTGTCAATGGCAATCTTCAGATAAGTGA
AAATTAACGTATGGTCTATAACTAAGAAACTATCGATGGGTCACGAATGG
GTTGCATACTGGTGGAAGAAGACTGTATTTAGAATTAGGAAAATAAATTT
CAAATTATTTGGCTAATTTCTGCATTGGATAGAAAGGGCTAAAAAAGTGC
ATTTTCTTATTTAAAATGNTAATTATGTTAACTTTTTCTATCTACTGATT
GAGAAATTCTTCACGTTTCGTTATAGTTCTTATGCGATGATAAGACATTA
ATAATGACCTAACATTTATGGTTGGGATTAGAATAGGCTGTATTATCTGT
TATATTACATGAAATTCTTTGGTCTTCATGTACAGAAAAAGATTAAGTTT
TGGCACAAAGTACTTAGTACTACGGTTAAACTTTCTCATCCCCAGCTAAA
CTTTTCTATTACCACTTAACAACGGAAACAGACTGTAACTATCGGTATTT
GAAAAAGTAACTTCGGTTTGTTAGATCGTTTCAAGGCCGTAACCTTTTGA
CCGCGCAGTCGTACGCAACAGAAAGATTTTTGCCGGTACACCCGAAAAAA
AAACGGAATGATTCTGGAAATGCGCCAGGAATGTTTCCTACGGTACTGTT
TGTAATGCTGTTTTAATTATAACTTTTTTGTTTTTAGGTAACAAAAAGTT
ACGACCTGACTTCGCTAATGGCAACAATAATAACAACACGAGGAGTTACG
ACTACATTAATTCAATGCCTGACATTTTTCATAAAAGTAAACTAGCTTCT
GGTGACATCGAATACTGCGAAGAAGATTACAACAGTGAAGCCAGCCTAAT
GTCTGATATCGGAATCGATTCAACCTTTGAAGGATCTATAGTAGATGATC
AGATGCTACTCTATCCTTCGCTTCACACTAACGCAAATGATATCAGGAGC
AAGGCTATGATAAATGAGTTTACCGACTCGAGCGGTGATGAGAGCTTTAC
TACAGAACAGACTGACCGTTTCCGACAGCAAATACCAACAAGTGCTACGG
AACGAACCGTATATTGCGGTTATACCGGATGTTCACATAAACAAGTCATG
GTCGGAAATGAGAAATCGAAGTTCATTTCATGCAATTCGTGTTTTACTTG
CTACTGCAGTAAGACCTGCAAACGCATGCATTGGTTGGATCACCGTAAGA
GTTGCTTCTTCGGACGAATCAATGTTTACATTAAAACCATCGTTCGAAAA
TGTGAAAAAGAAAACAAATTTAACTCGTTCCTGAAAACGTTCGCATTGAA
AAACTACCGCGCAATCGGTCGTGGATGTGTTGTTTTGACATTCAACTCGC
CAAGTGAAGCAAAGGAAATGACGTCACAGAAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065415-exon-scaffold_439-1575043694:263967..264129 | TCONS_00065415-exon-scaffold_439-1575043694:263967..264129 | Clytia hemisphaerica | exon |
| TCONS_00065415-exon-scaffold_439-1575043694:260935..263785 | TCONS_00065415-exon-scaffold_439-1575043694:260935..263785 | Clytia hemisphaerica | exon |
| TCONS_00065415-exon-scaffold_439-1575043694:258846..259542 | TCONS_00065415-exon-scaffold_439-1575043694:258846..259542 | Clytia hemisphaerica | exon |
| TCONS_00065415-exon-scaffold_439-1510915933:263967..264129 | TCONS_00065415-exon-scaffold_439-1510915933:263967..264129 | Clytia hemisphaerica | exon |
| TCONS_00065415-exon-scaffold_439-1510915933:260935..263785 | TCONS_00065415-exon-scaffold_439-1510915933:260935..263785 | Clytia hemisphaerica | exon |
| TCONS_00065415-exon-scaffold_439-1510915933:258846..259542 | TCONS_00065415-exon-scaffold_439-1510915933:258846..259542 | Clytia hemisphaerica | exon |
| TCONS_00065415-exon-scaffold_439-1491911889:263967..264129 | TCONS_00065415-exon-scaffold_439-1491911889:263967..264129 | Clytia hemisphaerica | exon |
| TCONS_00065415-exon-scaffold_439-1491911889:260935..263785 | TCONS_00065415-exon-scaffold_439-1491911889:260935..263785 | Clytia hemisphaerica | exon |
| TCONS_00065415-exon-scaffold_439-1491911889:258846..259542 | TCONS_00065415-exon-scaffold_439-1491911889:258846..259542 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:258846..264129 - |
Blast
The following BLAST results are available for this feature:
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