TCONS_00065414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065414
Unique NameTCONS_00065414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065414 ID=TCONS_00065414|Name=TCONS_00065414|organism=Clytia hemisphaerica|type=transcript|length=3634bp
CAGAAATTCTACATTTTGAGTGAAACCACGGAAAGAGGCATTCCATTcca
attcaaattttatcacccaaatcaaatcaaactgGAGCAGCAGAGAAGAA
AAAACCGCGACTAACATCAGACGGTCGTGAGTGAGGAAGTCAAACGAaga
atttttatacttttttgttttggtgcTTTACATTTGCTCAAAATTGACTT
gacatttttcttcaaaaagactttgttcttgaaatttttatgGCTGTCGG
TGAAAATGAATCTTTGCAGTATGACATCACAGACGACTCCGTCCCACCGT
ATAATCCGAAGCATCGATTTTCACTTGCTTTCAAGAGGGCAAGTTATCAA
GCCCCAGAAGAAATTTGGAACTTATTCTCTGAGGCTGAAGACTGTTGTGA
CATTATAGATTATTTTAATGCTTTGATAAAATCACTGAACATTGACCGAA
ATATTCATGGAGTAGAACTTTATGAtattttaaaatcgaaattgaCATCT
TGGAAATGTCAATCCTTATGGGATCTTTTGAATGCTCGTTTAAAGCATAG
TGAATACAAGCAGGGCAATGCTGCTAAAGGAAAAACTTGTATGATTATAG
GATGCGGTCCAATAGGGCTTAGAACTGCAATTGAATGTCTTATGCTTGGT
TGTAAGACCATCATAGTGGAAAAAAGAGATGAATTTGCAAGAAACAATGT
TCTCCATTTATGGCCCTTTTTAATGACAGATTTTCGTAATCTTGGagcta
aaaagttttttggaaaatttggtgCTGGTTGTATTGAGCATATAAATATC
AAGACACTGCAATGCATTCTCTTAAAAGTTGCATTGATCCTTGGTGCAGA
AGTTTATGTTGGTGTCTGCTTCAACAACCTGGTTGAGCCAGCTGATGAAA
ACACTGGATGGAGGGGCTCATTTCTTCCTGAAAATCATGTTCTTTCAAAA
ACAGAATTTGACATCATTATTGGTGCTgatggaaagaaaaatattttacc
tgGCTTTGAGCAAATGGAGCTTAGAGGTGCCCTTGCTATTGGAATCACCT
GCAATTTTGTCAACAACAACACAATAGAAGAAGCTAGAGTCAACGAAATC
AGTGGCATTTCTTTCCAATACAATCAGAATTTCTTCttgaaaatggaaga
aaaatatGGTGTACGCTTGGAAAATATTGTATATTACAAGGACGAAACAC
ATTACTTTGTTATGACTGCACTGAAAAACagcttgttgaaattgaaagtt
ttaaaagagGACTTTAGCGATCCTAGCAAGCTGATAACTTCATCAAACAT
CGACAAACAGAAACTGATGGAATTTGCACGATCAGCTGTAGACTTTGCAA
CAGACCATCAGCTACCAGAAGATCTTGAATACAACAAACTTTCAAATGGA
GAACCAGATATCGCATTATTCGATTTCACATCCCTCAAGAAAGCATCAAA
TGCCTCTCGAAtcatagaaagaaacaaaaagaaactgCTTTTAACACTTG
TTGGGGATAGTTTGATTGAGCCCTTTTGGCCAACTGGATCCGGTGCTGGT
CGTGGTGTTCTGAGTGCTTTAGATTGTGCTTGGCTGATAAAGCAGTATTG
TAGCAACCATCCTCCACTTGCATGTGTTAGGGAACGAGAAAACATCTACA
AGCTATTGTCTGGAATAACAAATGACAGTCTTCAGAAAAATCACAAGGCA
TTCACTATTGATCCTAAAACAAGATACACTGCTTTTGATTCGAGAAAAGT
ATCCAACATTGCATCACTACAATCTTTGTATGATACTGATGATCTTGAAA
ATGCTGATTTGTCAGTAACCAGTCCACAACAGAAAGAAAAGGATACaagt
tttgtgaaaaagagaaGGCGAAGTAGCAGTGGGGGTAGCAAAAAGAAAAC
GGTTACAAGTACACACGTCCATCCACATGGCCAGACTACAGTAGCTGGGA
AAAAGCGAACATCTCCACTTAAAGACACGAAACAAGAGCCTACTGTTGGA
AATACCAAACAGTTCTGGGAAGAACATAACAAGaaaaatcttACAGACAG
GGCcaagcagcaagtttcaaaaccCAAAAAGCGAACAACCCCATCTATCG
AAGAAGAAGGAATTGATATGGAAGGCTGGAGTGAGattgatgatgacgtc
attgaagaTAGTAAACTATCTGCACGATCAACCAAATCAATTAAATCAGC
TCGTGATAAGTCTCCCAGAGAAAACAAAGAGAATTCattaaaaaggcaaa
aaacaaaagataatCTCCTCAAAAGACAAAAATCCAAAGAAGCACTTAGT
CCAACCAAATCTAAACCATCCAAAGCAAAAACACCTGACTCTAAAAAAGG
aaccttgaaaaaagaaaatacgaAAAGGAAAATCTCTATGAAACAAGATC
CAGCTAGGTATGATAAATTTCTCAAAACGTCTTCCTCCTATCAAAGAAAA
CTAGCAAAGGGAACAAGTGGTTTGAATCAATCTACATCAAGTAATTCAGG
ATCTGTTGATCGTAAAGTAAGATCAAGTTCCAGAATTGCTGCAAGAGCCT
CTAGTGTCAAAAAGCCTGCAAATGCTAAACAAAGTGTCACTTCCTCAAGG
AAAAACACTTCAATCAATCGTACGGCAAATGCTAAAAAACTTAGAAGAAA
GTCAAGTGTTCGAAAGACACTAGATACTTCAGTTCATGCTGGTAGACGAA
AGATCATGACAAAAAGTAGTTCAAGTAATCTTTTGAAATCAAAGCAGTCT
TCTAAAGTAACCCCTGTTGAGGAGAAGAGtacgaaaaatttgaaacgtAC
TGTAGCAAGAACTTCTCTTGATAGTACTGACATGTTGAAAGAAGAGAAAC
CGATGTCTTCTCAAGAGAATGATGCTAAACGACAAAGAATCGGTTCATTG
CCTTTACCTACTATCAGTGTTACCTCGCCTGAAAAAACCTCTACATCATC
AAGTGTTCCCATGTCACCGTCTCCGTTTGTTATTGAAACAACAAGTTTGT
CTAATAAAGTTGGAAATCGATTGTGTCCTCTTGGAAAACGTAGTAGAGTT
CCAGCTACGGGGATGGTCAGTAATTTTTTGAGAGATCACAGAGCTGCCAG
TATATCAGTTTTCTCACCTGTTCAAGAAGTTGAAGACACGGCTGAAGATG
TTTTTGATGGGATTCCGGAAGATGCACCTCTCAACCAAACTGACAACCCG
CCAAGAGCTCTCCGACATAAATTAAGACGCCAAAGTAACTTCAAATTAGT
ACGTTTGAACAGTATCAAAAACAAACGACGTTCTATGTTGAGAACTAGCC
AAAAATTACTCTGATGTTTTTGTAACATCAAAATCTCAGGGCCCAATACT
GATGTAGATAGTGATGAAAAACTACTTGTTTTCTTTGCAAAGTAGTGTAT
GATGTTTCTTACTCTTAAGTTTTTGGGTCCTGAAAACATAAACGGTGCTT
TTCAGCGCCATTGTATAAAGATATAATATATTTAAACATTCTGATATAAC
CAACACAACATTGCACATTTTAATATATACCACTTATATTAATTTAtctc
aaatattttgcttgaaagtttttctttgattcacattttatgtttttctg
tacatatttttgtgtttgtttgaATGAAGtggga
Run BLAST on NCBI

transcript from alignment at scaffold_439:238115..245558-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065414 ID=TCONS_00065414|Name=TCONS_00065414|organism=Clytia hemisphaerica|type=transcript|length=7444bp|location=Sequence derived from alignment at scaffold_439:238115..245558- (Clytia hemisphaerica)
CAGAAATTCTACATTTTGAGTGAAACCACGGAAAGAGGCATTCCATTCCA
ATTCAAATTTTATCACCCAAATCAAATCAAACTGGAGCAGCAGAGAAGAA
AAAACCGCGACTAACATCAGACGGTCGTGAGTGAGGAAGTCAAACGAAGA
ATTTTTATACTTTTTTGTTTTGGTGCTTTACATTTGCTCAAAATTGACTT
GACATTTTTCTTCAAAAAGACTTTGTTCTTGAAATTTTTATGGCTGTCGG
TGAAAATGAATCTTTGCAGTATGACATCACAGACGACTCCGTCCCACCGT
ATAATCCGAAGCATCGATTTTCACTTGCTTTCAAGAGGGCAAGTTATCAA
GCCCCAGAAGAAATTTGGAACTTATTCTCTGAGGCTGAAGACTGTTGTGA
CATTATAGATTATTTTAATGCTTTGATAAAATCACTGAACATTGACCGAA
ATATTCATGGAGTAGAACTTTATGATATTTTAAAATCGAAATTGACATCT
TGGAAATGTCAATCCTTATGGGATCTTTTGAATGCTCGTTTAAAGCATAG
TGAATACAAGCAGGGCAATGCTGCTAAAGGAAAAACTTGTATGATTATAG
GATGCGGTCCAATAGGGCTTAGAACTGCAATTGAATGTCTTATGCTTGGT
TGTAAGACCATCATAGTGGAAAAAAGAGATGAATTTGCAAGAAACAATGT
TCTCCATTTATGGCCCTTTTTAATGACAGATTTTCGTAATCTTGGAGCTA
AAAAGTTTTTTGGAAAATTTGGTGCTGGTTGTATTGAGCATATAAGTGAG
TATTTTTTGTTTGAATTTATTTACAAAATTACAAAATTATAAATTTTTGT
TAATAACGGTCTAATTTGATTTTTTTTGTTTTCATTACATTTTTTCTTAT
TCAAGTAGACTAAAAGACTAGTATTACAATATTATGAATTTCCCAGTAGA
AAATGAAAATTAAAAGGTCAAGATCAGCCAATCCCATTGTTTGTGTTGCT
AATAGAAATTAGTTGTCAAGTAGTTGTTATCATAGTCATTGTTTCCTCTC
TATAAAAATTGTTGCATAATTGCTCTATAGGAAATTTCAATAGTTGAAAC
TGCAATTCCATAGTATGGGGTCATTTTCTTTTGATTTAATCATATTATGA
TGTGAACAAACTTGAAACTTTTTTGAGATTTTAAGGACAAGGCAGTATCA
AACACAGAATGATTAGATATTTAATACACCAATGTCTGATAAATCTTTTA
TGAGGAAAGTATTATGAAGTGATAGAATGGATTTTCTATTATTCATGAGA
TATCAGATTTGTGTGATATAAAATAACTGAAAAATCTATATTTAAAATCT
GATTTTCTTTGTATGTAACACAGATACTTTCTCATAATATTTAAATGAAA
ACAGCTAAATTAGCATTGAAGCCTTGAAAAGGAGTAAAACATACAGGAAG
CTCTTGTTGACATTATAAGTGAAATATGAAACACCATTTAATTCTGTCTT
ATCATGCATAACAAATGTGCAATGATATGACGCATTACATAAATGACATT
TCAATTATGTCACTCATTTCATTATGAATTTTTTAAAACATCAAACATTT
AGTAAAAAAGCCTATCTTTTAAAATGAGAACACCAGATGTCTGTTCTTGA
TTGTATAACAATGTTTTAATGAGCTTTTACAATCTTCAAGTAGAGCTGTT
TTAAATCAACTGTAGGAAGATTAAGAATCATTTGACTTTAAACTGTTTAC
TACAGTTTACTAAGGTGCTTTGAAGTGTTATTGAAACAGTTATTTCTTAA
GCTCCAAATTGCTTATCAAGGTCTATTTCACAACTTTGATTCTTTCTTTG
TGAAAACTTTCTTGTGATTTCAAAGAATCTTTTGATTATCTGAAAAATGT
AATATTTCTCTAAATTTATACTTCTTAAAAGCAGTTAAAAGTGTATTAGT
GTAAACATGATTTTTAGCACTTCATAGAATTTATTGTAGTGCCAAACACA
TTTTCACATGGCCCTGTTATATGCTATTATCTGAGCTCTTACATTATGAA
AACCTTTCCTCAAAACCTCTTCACACTTGATGCAAAAAATAAGGATAGAG
GAGGTAGAATAACATACATTCACCTTCTTCAAAACCTCTTATACAATATG
GAGAAAATTCTCATCTTGTTGATATAGTGACATGCAATACATAGCTTTCC
CTTAAATAGGTCTTCAAAAACCGTTCACTTCAAATGATAGTAGTTATTAT
TGTTTGTTTTAAAGACAACAATCTTGTATAGTGGGTGCACCACAAAAAAG
TTTCTCTCTTTGAACTTTATTTCATGAACTCTAAAAGAGTAAACTCTGAT
GCATTGGAAAGAGGAAATATGTGTCATCACAAGCAACTTTAAATACGAAT
GAAATGGAACGTTCCAAAACGTCCCTGAACGTTTTAGAATGATTGAGGAT
GTTCTGGAACGCTCTAGGAACGCTATGGAACGTTTGTGAACGTTCAGGAA
CGTCTCAAGAACACTCCGTTTTATTTGTACTTCAAATCCCTTGTGATGAC
ACATATAAGCTTAAATTTTGATGGGTTATTTATTGAATTAGGTTTATTGG
CAGATCAAAACTTACCTCCAAAAAGTGCTCCCAAACATCATCAAAATCGA
CCTATCAAATTAAAAATATAAGTATATTTTTCATAGTTTCATCAATTTCA
AGTGATAAAAAATGATAATTAACTGTCAAATGACTTTTATTACACAAAGG
AGAGTTGGATTCCAGTTTTGAAAAGAAAACTTGTGTTAAGTTAATGAATT
AACAAACAAAAAGCTCTTGCAAGAGAAGGATTCAGTTTGTTAAAAGTCAT
AGAAATGAAGTAAATTTACTTCAAAGAGAAAAAATCTTGTGGCCCACACA
GTGGCAATTTTGTAGCATTTGATATCTAAGGTAAGTTTACATGGAAATGC
TAGGCGTCTTATCAATAAACTTCTCCTAACGAATAGATGGACATATGGAT
ACAGAATCCTGACCAAAAGAAAACTTAATGCCTTTCTGGGAAGATTGCTA
GTCCTCGTTTTTCTCGTTTTGGAAGATGTCACACTTAATAAGTTCGGAGC
TTACAAAAAGTAATTACAGTAAATAGATGAGAGTGAGTTGGCAACAGTTG
TATAATTTGGCCTGATTATGACTACAAAAAAGATACTAAGTAATAAAAAG
AGATTAGCCAATAGAATACCTATGATTAGTGGGTTAGTTACATCCAGAAC
TTGCTATAAAAGATACCAATAGACTACCTTCTTGTTGATAGAAACCGTTC
CATGCTGTTCCATGATAAAAAAACCTGAAGAAAACTTTTTTTCTTACAAT
CTAATTTCATTATTGATATCAATCAAGGATTCGTTTATGATGTCATTTAA
TCCTCTCTTTTTTTCTTACCAAAGATATCAAGACACTGCAATGCATTCTC
TTAAAAGTTGCATTGATCCTTGGTGCAGAAGTTTATGTTGGTGTCTGCTT
CAACAACCTGGTTGAGCCAGCTGATGAAAACACTGGATGGAGGGGCTCAT
TTCTTCCTGAAAATCATGTTCTTTCAAAAACAGAATTTGACATCATTATT
GGTGCTGATGGAAAGAAAAATATTTTACCTGGCTTTGAGCAAATGGAGCT
TAGAGGTATACAGGACATTTTTTAGAAAGGCAGGGCAGCGTCTGTAGATG
GCCAAAATGAGCACTTTTTCTAGTGTTTTCCACTAAAAAGGCTGTTTTTA
CCAAAATGTAATTTCAACATCCAATAACCAGATGCTTAAAAGGGAACGTA
AAACGGCCTGGTAACACCCTTTTTTGCCTATATTGAAGCTTCACCCAATG
ACTGATCAAAGAAAATCCAGGGAAAATAAAAAAATAATAGATAAGTGAGT
CTGATTGCTTGATTAGCCTGAATTTTGTTATTTTCTTAAGGTGCCCTTGC
TATTGGAATCACCTGCAATTTTGTCAACAACAACACAATAGAAGAAGCTA
GAGTCAACGAAATCAGTGGCATTTCTTTCCAATACAATCAGAATTTCTTC
TTGAAAATGGAAGAAAAATATGGTGTACGCTTGGAAAATATTGTATATTA
CAAGGACGAAACACATTACTTTGTTATGACTGCACTGAAAAACAGCTTGT
TGAAATTGAAAGTTTTAAAAGAGGTATTTGATCTCTTTTGTTCTTTATTT
CTTTATTTTCTTTCTCTTGAATAGAAATGCTTGTATTTAAAGTATTTTAC
ATTCAAATCAATGATACCAGAATTCACCACTTCGGAAAGTTTTTAAAATG
TTGAGAAAATATTATTTTAAAAAAAATCCAGTAGTATATACTTATTACTT
GATTTGTATCTTTCTTTTTAGGACTTTAGCGATCCTAGCAAGCTGATAAC
TTCATCAAACATCGACAAACAGAAACTGATGGAATTTGCACGATCAGCTG
TAGACTTTGCAACAGACCATCAGCTACCAGAAGATCTTGAATACAACAAA
CTTTCAAATGGAGAACCAGATATCGCATTATTCGATTTCACATCCCTCAA
GAAAGCATCAAATGCCTCTCGAATCATAGAAAGAAACAAAAAGAAACTGC
TTTTAACACTTGTTGGGGATAGTTTGATTGAGGTATATGGTAACTCAATT
CTGTTGATCTAACTATGTAATGCATTCAGATAACAACTAAAAAAATCTCT
TGCATATGTTTTTTTCAAACTTAACTTGGAGTGACAATAAGAATACCAGT
TTGAAGCCCTTCAAAATAACCCAGAATTATCTGTTATCATCAATCAAAAA
ACTTTTAAAATCAAAATATACTTTTTCTTAAAGTATGCTTTTTTTATTTC
GCTAGCCCTTTTGGCCAACTGGATCCGGTGCTGGTCGTGGTGTTCTGAGT
GCTTTAGATTGTGCTTGGCTGATAAAGCAGTATTGTAGCAACCATCCTCC
ACTTGCATGTGTTAGGGAACGAGAAAACATCTACAAGCTATTGTCTGGAA
TAACAAATGACAGTCTTCAGAAAAATCACAAGGCATTCACTATTGATCCT
AAAACAAGATACACTGCTTTTGATTCGAGAAAAGTATCCAACATTGCATC
ACTACAATCTTTGTATGATACTGATGATCTTGAAAATGCTGATTTGTCAG
TAACCAGTCCACAACAGAAAGAAAAGGATACAAGTTTTGTGAAAAAGAGA
AGGCGAAGTAGCAGTGGGGGTATGTTTATCAGCTTTTTACTTTATTTTTA
CTTCATTTCGTGAGCTTGTGGGCCATTCCAGGAAAATGAATCAGGATCAG
AGTGTACGTGATTGAAAAGCTCTTATGGTGTTGACAAAATGGTGCANTGA
ATCAGGATCAGAGTGTATGTGATTGAAAAGCTCTTATGGTGTTGACAAAA
TGATGCACAAGCTACAGCTCTTCTACTGTCTTCTACTGTTGTTGTATACA
GTGAAATAGGTTAAATTAAAGCACCCATTCCTATGAATTATCCAAACTGT
TTCTATTTTATTTTCCACTTTTATATTTTCATGTCTTTTATTTCTTTTAC
ACTCAAGGTAGCAAAAAGAAAACGGTTACAAGTACACACGTCCATCCACA
TGGCCAGACTACAGTAGCTGGGAAAAAGCGAACATCTCCACTTAAAGACA
CGAAACAAGAGCCTACTGTTGGAAATACCAAACAGTTCTGGGAAGAACAT
AACAAGGTTTAATCTCATTTTCTAAAAAGGTTTTTTTATGTGACATAATT
CCCCCTGGGTTTATTTATTTTTTAGGCTAGGCTAAGTCAGGTTTTCTGCT
TTTAATCTGCTTTTTTTGTTAATTTTTTGTTTCCTTTATTTAGAAAAATC
TTACAGACAGGGCCAAGCAGCAAGTTTCAAAACCCAAAAAGCGAACAACC
CCATCTATCGAAGAAGAAGGAATTGATATGGAAGGCTGGAGTGAGATTGA
TGATGACGTCATTGAAGATAGTAAACTATCTGCACGATCAACCAAATCAA
TTAAATCAGCTCGTGATAAGTCTCCCAGAGAAAACAAAGAGAATTCATTA
AAAAGGCAAAAAACAAAAGATAATCTCCTCAAAAGACAAAAATCCAAAGA
AGCACTTAGTCCAACCAAATCTAAACCATCCAAAGCAAAAACACCTGACT
CTAAAAAAGGAACCTTGAAAAAAGAAAATACGAAAAGGAAAATCTCTATG
AAACAAGATCCAGCTAGGTATGATAAATTTCTCAAAACGTCTTCCTCCTA
TCAAAGAAAACTAGCAAAGGGAACAAGTGGTTTGAATCAATCTACATCAA
GTAATTCAGGATCTGTTGATCGTAAAGTAAGATCAAGTTCCAGAATTGCT
GCAAGAGCCTCTAGTGTCAAAAAGCCTGCAAATGCTAAACAAAGTGTCAC
TTCCTCAAGGAAAAACACTTCAATCAATCGTACGGCAAATGCTAAAAAAC
TTAGAAGAAAGTCAAGTGTTCGAAAGACACTAGATACTTCAGTTCATGCT
GGTAGACGAAAGATCATGACAAAAAGTAGTTCAAGTAATCTTTTGAAATC
AAAGCAGTCTTCTAAAGTAACCCCTGTTGAGGAGAAGAGTACGAAAAATT
TGAAACGTACTGTAGCAAGAACTTCTCTTGATAGTACTGACATGTTGAAA
GAAGAGAAACCGATGTCTTCTCAAGAGAATGATGCTAAACGACAAAGAAT
CGGTTCATTGCCTTTACCTACTATCAGTGTTACCTCGCCTGAAAAAACCT
CTACATCATCAAGTGTTCCCATGTCACCGTCTCCGTTTGTTATTGAAACA
ACAAGTTTGTCTAATAAAGTTGGAAATCGATTGTGTCCTCTTGGAAAACG
TAGTAGAGTTCCAGCTACGGGGATGGTCAGTAATTTTTTGAGAGATCACA
GAGCTGCCAGTATATCAGTTTTCTCACCTGTTCAAGAAGTTGAAGACACG
GCTGAAGATGTTTTTGATGGGATTCCGGAAGATGCACCTCTCAACCAAAC
TGACAACCCGCCAAGAGCTCTCCGACATAAATTAAGACGCCAAAGTAACT
TCAAATTAGTACGTTTGAACAGTATCAAAAACAAACGACGTTCTATGTTG
AGAACTAGCCAAAAATTACTCTGATGTTTTTGTAACATCAAAATCTCAGG
GCCCAATACTGATGTAGATAGTGATGAAAAACTACTTGTTTTCTTTGCAA
AGTAGTGTATGATGTTTCTTACTCTTAAGTTTTTGGGTCCTGAAAACATA
AACGGTGCTTTTCAGCGCCATTGTATAAAGATATAATATATTTAAACATT
CTGATATAACCAACACAACATTGCACATTTTAATATATACCACTTATATT
AATTTATCTCAAATATTTTGCTTGAAAGTTTTTCTTTGATTCACATTTTA
TGTTTTTCTGTACATATTTTTGTGTTTGTTTGAATGAAGTGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040996XLOC_040996Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065414-exon-scaffold_439-1575043694:244764..245558TCONS_00065414-exon-scaffold_439-1575043694:244764..245558Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1575043694:241904..242134TCONS_00065414-exon-scaffold_439-1575043694:241904..242134Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1575043694:241386..241618TCONS_00065414-exon-scaffold_439-1575043694:241386..241618Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1575043694:240927..241187TCONS_00065414-exon-scaffold_439-1575043694:240927..241187Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1575043694:240340..240703TCONS_00065414-exon-scaffold_439-1575043694:240340..240703Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1575043694:239853..240001TCONS_00065414-exon-scaffold_439-1575043694:239853..240001Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1575043694:238115..239715TCONS_00065414-exon-scaffold_439-1575043694:238115..239715Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1510915933:244764..245558TCONS_00065414-exon-scaffold_439-1510915933:244764..245558Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1510915933:241904..242134TCONS_00065414-exon-scaffold_439-1510915933:241904..242134Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1510915933:241386..241618TCONS_00065414-exon-scaffold_439-1510915933:241386..241618Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1510915933:240927..241187TCONS_00065414-exon-scaffold_439-1510915933:240927..241187Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1510915933:240340..240703TCONS_00065414-exon-scaffold_439-1510915933:240340..240703Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1510915933:239853..240001TCONS_00065414-exon-scaffold_439-1510915933:239853..240001Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1510915933:238115..239715TCONS_00065414-exon-scaffold_439-1510915933:238115..239715Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1491911889:244764..245558TCONS_00065414-exon-scaffold_439-1491911889:244764..245558Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1491911889:241904..242134TCONS_00065414-exon-scaffold_439-1491911889:241904..242134Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1491911889:241386..241618TCONS_00065414-exon-scaffold_439-1491911889:241386..241618Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1491911889:240927..241187TCONS_00065414-exon-scaffold_439-1491911889:240927..241187Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1491911889:240340..240703TCONS_00065414-exon-scaffold_439-1491911889:240340..240703Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1491911889:239853..240001TCONS_00065414-exon-scaffold_439-1491911889:239853..240001Clytia hemisphaericaexon
TCONS_00065414-exon-scaffold_439-1491911889:238115..239715TCONS_00065414-exon-scaffold_439-1491911889:238115..239715Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:238115..245558 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.4011	20.0589	18.5164	15.9114	81.1087	62.3381	26.0033	26.5026	12.6815	16.1638	10.5026	8.52894	10.28	7.24793	10.0458	10.7599	15.0201	19.0085	2.58852	5.58609	7.50543	6.39213	12.4086	14.4351	24.0109	21.1526	7.7968	4.09393	9.44979	11.2611
Blast
[Close]
BLAST of TCONS_00065414 vs. Swiss-Prot (Human)
Match: MICA2 ([F-actin]-methionine sulfoxide oxidase MICAL2 OS=Homo sapiens GN=MICAL2 PE=1 SV=1)

HSP 1 Score: 456.447 bits (1173), Expect = 1.060e-139
Identity = 237/488 (48.57%), Postives = 328/488 (67.21%), Query Frame = 3 
Query:  360 EIWNLFSEAEDCCDIIDYFNALIKSLNIDRNIHGVELYDILKSKLTSWKCQSLWDLLNARLKHSEYKQGNAAKGKTCMIIGCGPIGLRTAIECLMLGCKTIIVEKRDEFARNNVLHLWPFLMTDFRNLXXXXXXXXXXXXCIEHINIKTLQCILLKVALILGAEVYVGVCFNNLVEPAD----ENTGWRGSFLPENHVLSKTEFDIIIGADGKKNILPGFEQMELRGALAIGITCNFVNNNTIEEARVNEISGISFQYNQNFFLKMEEKYGVRLENIVYYKDETHYFVMTAXXXXXXXXXXXXEDFSDPSKLITSSNIDKQKLMEFARSAVDFATDHQLPEDLEYNKLSNGEPDIALFDFTSLKKASNASRIIERNKKKLLLTLVGDSLIEPFWPTGSGAGRGVLSALDCAWLIKQYCSNHPPLACVRERENIYKLLSGITNDSLQKNHKAFTIDPKTRYTAFDSRKVSNIASLQSLYDTDDLENADL 1811
            +++  F +A  C   +  FN L + L++D   H    Y  LKSK+T+WK ++LW  L+ R  H EYK+G +     C+I+G GP GLRTAIE   LG K ++VEKRD F+RNNVLHLWPF + D R LGAKKF+GKF AG I+HI+I+ LQ IL KVAL+LG E++V V F  ++EP +    +  GWR  FLP +H LS+ EFD+IIGADG++N L GF + E RG LAI IT NF+N N+  EA+V EISG++F +NQ FF  ++E+ G+ LENIVYYKD THYFVMTA K SLL   V+  D+ D   L+ + N+++  L+ +AR A DFAT++QLP  L++     G+PD+A+FDFT +  + NA+ + ER   +LL+ LVGDSL+EPFWP G+G  RG L+A D AW++K +    PPL  + ERE++Y+LL   T +++ KN + +T+DP TRY   +S  V     ++ LY T +LE+  L
Sbjct:   14 QVFENFVQASTCKGTLQAFNILTRHLDLDPLDH-RNFYSKLKSKVTTWKAKALWYKLDKRGSHKEYKRGKSCTNTKCLIVGGGPCGLRTAIELAYLGAKVVVVEKRDSFSRNNVLHLWPFTIHDLRGLGAKKFYGKFCAGSIDHISIRQLQLILFKVALMLGVEIHVNVEFVKVLEPPEDQENQKIGWRAEFLPTDHSLSEFEFDVIIGADGRRNTLEGFRRKEFRGKLAIAITANFINRNSTAEAKVEEISGVAFIFNQKFFQDLKEETGIDLENIVYYKDCTHYFVMTAKKQSLLDKGVIINDYIDTEMLLCAENVNQDNLLSYAREAADFATNYQLP-SLDFAMNHYGQPDVAMFDFTCMYASENAALVRERQAHQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMVKSWNQGTPPLELLAERESLYRLLPQTTPENINKNFEQYTLDPGTRYPNLNSHCV-RPHQVKHLYITKELEHYPL 498
The following BLAST results are available for this feature:
BLAST of TCONS_00065414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MICA21.060e-13948.57[F-actin]-methionine sulfoxide oxidase MICAL2 OS=H... [more]
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