TCONS_00065412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065412
Unique NameTCONS_00065412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length991

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065412 ID=TCONS_00065412|Name=TCONS_00065412|organism=Clytia hemisphaerica|type=transcript|length=991bp
GGGAAGAACATAACAAGaaaaatcttACAGACAGGGCcaagcagcaagtt
tcaaaaccCAAAAAGCGAACAACCCCATCTATCGAAGAAGAAGGAATTGA
TATGGAAGGCTGGAGTGAGattgatgatgacgtcattgaagaTAGTAAAC
TATCTGCACGATCAACCAAATCAATTAAATCAGCTCGTGATAAGTCTCCC
AGAGAAAACAAAGAGAATTCattaaaaaggcaaaaaacaaaagataatCT
CCTCAAAAGACAAAAATCCAAAGAAGCACTTAGTCCAACCAAATCTAAAC
CATCCAAAGCAAAAACACCTGACTCTAAAAAAGGaaccttgaaaaaagaa
aatacgaAAAGGAAAATCTCTATGAAACAAGATCCAGCTAGACCAGTTGA
tcctaaaagttttttcagaatttgGTTAAATAAGATACAAgaaaaattca
aggaaaaagCAAATATAAACCAGGATGACCCTGAAGCCGTCAATAACGGG
CCAAGTGCCCTTGTCATGGCTACTCAATCAGCAGCTCTGGGAGGAATGGC
CTTACCGATGCTATTGGATTGCAACAGGCCTCCAAAACGGAGGACAACAG
ATATAAAGTTGAGGGATTTACAATTAGCAAAGCAGGCTTTGCTAAATCCT
TCAACTGATGCACATAAAGAAACACAAGACatctCTGTCAAACGCGCTGG
TAGCGTTCGAAACACAATTGAAAAACTAAAAGAAATCACCAAAGATGGCA
ATCCATCAAATTATTATGATTTCGTTAATAAAAAACCAAACTCAAATGAC
AAAGTTGATGGTAAATCAACGGATTTCACACCCAAAGTAATTGATGTAGA
AGCCATGGTTcgaaaagaagagaaagaagaacaaaagaaatctaAGGCTG
TCAAGcaGTTGATTTGCAAACAATTTGTATACAACAGTGTACTCTGCACC
CTTCGGAAAGTATTACGTCACAAAGTCCAATTTGGTTTATC
Run BLAST on NCBI

transcript from alignment at scaffold_439:235651..239869-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065412 ID=TCONS_00065412|Name=TCONS_00065412|organism=Clytia hemisphaerica|type=transcript|length=4219bp|location=Sequence derived from alignment at scaffold_439:235651..239869- (Clytia hemisphaerica)
GGGAAGAACATAACAAGGTTTAATCTCATTTTCTAAAAAGGTTTTTTTAT
GTGACATAATTCCCCCTGGGTTTATTTATTTTTTAGGCTAGGCTAAGTCA
GGTTTTCTGCTTTTAATCTGCTTTTTTTGTTAATTTTTTGTTTCCTTTAT
TTAGAAAAATCTTACAGACAGGGCCAAGCAGCAAGTTTCAAAACCCAAAA
AGCGAACAACCCCATCTATCGAAGAAGAAGGAATTGATATGGAAGGCTGG
AGTGAGATTGATGATGACGTCATTGAAGATAGTAAACTATCTGCACGATC
AACCAAATCAATTAAATCAGCTCGTGATAAGTCTCCCAGAGAAAACAAAG
AGAATTCATTAAAAAGGCAAAAAACAAAAGATAATCTCCTCAAAAGACAA
AAATCCAAAGAAGCACTTAGTCCAACCAAATCTAAACCATCCAAAGCAAA
AACACCTGACTCTAAAAAAGGAACCTTGAAAAAAGAAAATACGAAAAGGA
AAATCTCTATGAAACAAGATCCAGCTAGGTATGATAAATTTCTCAAAACG
TCTTCCTCCTATCAAAGAAAACTAGCAAAGGGAACAAGTGGTTTGAATCA
ATCTACATCAAGTAATTCAGGATCTGTTGATCGTAAAGTAAGATCAAGTT
CCAGAATTGCTGCAAGAGCCTCTAGTGTCAAAAAGCCTGCAAATGCTAAA
CAAAGTGTCACTTCCTCAAGGAAAAACACTTCAATCAATCGTACGGCAAA
TGCTAAAAAACTTAGAAGAAAGTCAAGTGTTCGAAAGACACTAGATACTT
CAGTTCATGCTGGTAGACGAAAGATCATGACAAAAAGTAGTTCAAGTAAT
CTTTTGAAATCAAAGCAGTCTTCTAAAGTAACCCCTGTTGAGGAGAAGAG
TACGAAAAATTTGAAACGTACTGTAGCAAGAACTTCTCTTGATAGTACTG
ACATGTTGAAAGAAGAGAAACCGATGTCTTCTCAAGAGAATGATGCTAAA
CGACAAAGAATCGGTTCATTGCCTTTACCTACTATCAGTGTTACCTCGCC
TGAAAAAACCTCTACATCATCAAGTGTTCCCATGTCACCGTCTCCGTTTG
TTATTGAAACAACAAGTTTGTCTAATAAAGTTGGAAATCGATTGTGTCCT
CTTGGAAAACGTAGTAGAGTTCCAGCTACGGGGATGGTCAGTAATTTTTT
GAGAGATCACAGAGCTGCCAGTATATCAGTTTTCTCACCTGTTCAAGAAG
TTGAAGACACGGCTGAAGATGTTTTTGATGGGATTCCGGAAGATGCACCT
CTCAACCAAACTGACAACCCGCCAAGAGCTCTCCGACATAAATTAAGACG
CCAAAGTAACTTCAAATTAGTACGTTTGAACAGTATCAAAAACAAACGAC
GTTCTATGTTGAGAACTAGCCAAAAATTACTCTGATGTTTTTGTAACATC
AAAATCTCAGGGCCCAATACTGATGTAGATAGTGATGAAAAACTACTTGT
TTTCTTTGCAAAGTAGTGTATGATGTTTCTTACTCTTAAGTTTTTGGGTC
CTGAAAACATAAACGGTGCTTTTCAGCGCCATTGTATAAAGATATAATAT
ATTTAAACATTCTGATATAACCAACACAACATTGCACATTTTAATATATA
CCACTTATATTAATTTATCTCAAATATTTTGCTTGAAAGTTTTTCTTTGA
TTCACATTTTATGTTTTTCTGTACATATTTTTGTGTTTGTTTGAATGAAG
TGGGAAAAATTTTGATTATTTCATATCGTACTCTTCTTTTACATTTGTTG
TTTTTTTTTTTTCATGTTTTCATGTTTTCAAGCACTCATACTTGGTAAGA
AACATCATGCACTTTAAGGATATTTTAAGCCAATTATCAATCACTCAAAA
CCTCGGTTACTATGCTTTGATATTTCCTCTGGAAAGGTGGAGTACCAACT
TCACTTGTAAACGTTTTTTTTATATCACAGTGTATCACAATACCGTTAAC
TCTCTTGCTAATTCTCGGGAATCTTATTTGCTCGAATTATTGAGATATTC
GAATTATAGAAAGCATTTTACGAGAAGGTTTTCCTGTGACGGGGACTGAG
AATAGGTTTGAATTATAGAAGTTCGAATAAGCGAGAGCATTCTGTATATC
AATCTCAATATTCTGTGAATGAAATAAAGTTGTTCTTTCTCGTTTCAGAC
CAGTTGATCCTAAAAGTTTTTTCAGAATTTGGTTAAATAAGATACAAGAA
AAATTCAAGGAAAAAGCAAATATAAACCAGGATGACCCTGAAGCCGTCAA
TAACGGGCCAAGTGCCCTTGTCATGGCTACTCAATCAGCAGCTCTGGGAG
GAATGGCCTTACCGATGCTATTGGATTGCAACAGGCCTCCAAAACGGAGG
ACAACAGATATAAAGTTGAGGGATTTACAATTAGCAAAGCAGGCTTTGCT
AAATCCTTCAACTGATGCACATAAAGAAACACAAGACGTAAGATATTGAT
TGATTGANAAAGCAGGCTTTGCTAAATCCTTCAACTGATGCACATAAAGA
AACACAAGACGTAAGATATTGATTGATTGATTGATTGATTGATTGATTGA
TTGATTAATTGGAATACTTTTCTTTATTGATGGAAAAAGATGATACTCTT
TTCTTTTGATTTGTTATTGTTCCAAATTATCACCGAAGACATTTGCTCTG
AGTAATTTCCAGTTTTTTTTTCTTTTTAGATCTCTGTCAAACGCGCTGGT
AGCGTTCGAAACACAATTGAAAAACTAAAAGAAATCACCAAAGATGGCAA
TCCATCAAATTATTATGATTTCGTTAATAAAAAACCAAACTCAAATGACA
AAGTGTAAGTGATTTTTTCTTGAATTTCAAGCAGCGAATTATCGTTAGCG
TGGAAGGGATGAACATCTACATAAAGAATCTTTGTCATATAATTTTCTTC
TTGTCAGTTGAACTGATTATTTGATATTTCAAAATTCCATCTAAAAGGCG
TAAATTGATACTTCTTGTACATACCGAGAGCCCCCTTTTTAAGGGGGCAA
AAATCCTGAATTCATAGAGGGTTGGGGCTAGCGTTGCAGACCAGTTTGAT
GTTACTGATGCTCAAAGTCTTTGTTCAAAATTGCATTCTAATCTTTTTGT
GGGTTTTTCTTCTGCGCTTTGGATATAAAATTTAAATTGTGGATCATTTT
TAATCTGTTTAGTGATGGTAAATCAACGGATTTCACACCCAAAGTAATTG
ATGTAGAAGCCATGGTTCGAAAAGAAGAGAAAGAAGAACAAAAGAAATCT
AAGGCTGTCAAGGTGATTACTACACTCTTCTATAAATTGATCTGTTTGTT
GGTTAGCATTGCCATGTTTCTTCTTGCCATTGCACTTGCTTTTCATTACA
GTATTGTTGTGTGAAGTGGGGAGACTTTTAGGCACTGATGTGTGGTTTTC
ATTGACTTTAAAAATCTGACAATAAAGTGAAGCAGGATTGCATCGTTGTT
CTTAAGAATTTCTTTAGATCTTACTAATAAAAATGTTCCGCGCAATGTCT
TTGATAATTTCAAAATGTTCATCAGTGGTTTTTTTTCTGGGCTCGACAAT
TTTAGCCTTGCTTTCTATTCGATTATGTTAAAAATTAGGGATCCTAGGTT
CAGGATTAAAAAAATCGGTCTTTTCAGTCGGATTTTGCCAGGGAAACTTA
AAATAGGTTGTTTTTAAATTAGAAATTTGAACAGAATAAAATCATGGAAT
GATCATTGTTACCAACTCACAATTTTGCTAAATTTGCATGCACTATTTGA
AAATCAAAATACTTTTTGTACATAAACAATCAAATGATAGAAAAACAAGC
TATAGCCTGGTTACCACTTTGAAATTTGACTTTCTCTACAGTGCTCTACT
TTCTATGATCTACATTTTTTAGCGTTTCGAAAAAGAACAAGGAAATCAGG
CTATAGCTTGCTCTCTCGTGTACATTACATATAATACAAGCATAATACTT
ATTTTTAATAAAATTGAAATTCAAGTTTGATTTATTTTTGTATCTTAAAA
AAATATTTTTTAATGAATTTGCTATTGTAGATAATATTGAAAAAGTTAAT
GTTCAAATATAGTATAATATTTTCAATTTTCAGCAGTTGATTTGCAAACA
ATTTGTATACAACAGTGTACTCTGCACCCTTCGGAAAGTATTACGTCACA
AAGTCCAATTTGGTTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040996XLOC_040996Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065412-exon-scaffold_439-1575043694:239853..239869TCONS_00065412-exon-scaffold_439-1575043694:239853..239869Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1575043694:239342..239715TCONS_00065412-exon-scaffold_439-1575043694:239342..239715Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1575043694:237383..237671TCONS_00065412-exon-scaffold_439-1575043694:237383..237671Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1575043694:237016..237140TCONS_00065412-exon-scaffold_439-1575043694:237016..237140Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1575043694:236558..236657TCONS_00065412-exon-scaffold_439-1575043694:236558..236657Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1575043694:235651..235736TCONS_00065412-exon-scaffold_439-1575043694:235651..235736Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1510915933:239853..239869TCONS_00065412-exon-scaffold_439-1510915933:239853..239869Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1510915933:239342..239715TCONS_00065412-exon-scaffold_439-1510915933:239342..239715Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1510915933:237383..237671TCONS_00065412-exon-scaffold_439-1510915933:237383..237671Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1510915933:237016..237140TCONS_00065412-exon-scaffold_439-1510915933:237016..237140Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1510915933:236558..236657TCONS_00065412-exon-scaffold_439-1510915933:236558..236657Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1510915933:235651..235736TCONS_00065412-exon-scaffold_439-1510915933:235651..235736Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1491911889:239853..239869TCONS_00065412-exon-scaffold_439-1491911889:239853..239869Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1491911889:239342..239715TCONS_00065412-exon-scaffold_439-1491911889:239342..239715Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1491911889:237383..237671TCONS_00065412-exon-scaffold_439-1491911889:237383..237671Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1491911889:237016..237140TCONS_00065412-exon-scaffold_439-1491911889:237016..237140Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1491911889:236558..236657TCONS_00065412-exon-scaffold_439-1491911889:236558..236657Clytia hemisphaericaexon
TCONS_00065412-exon-scaffold_439-1491911889:235651..235736TCONS_00065412-exon-scaffold_439-1491911889:235651..235736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:235651..239869 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.49344	0.825074	1.75774	2.15491	27.7466	21.0733	17.3634	15.7349	4.07678	4.54895	5.44103	4.80158	2.05422	4.76077	4.7464	5.1616	4.25411	7.57114	2.48769	8.82252	2.804	3.09762	3.58949	3.81513	9.52893	4.13503	8.38783	5.40819	3.77116	4.59738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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