TCONS_00065392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065392
Unique NameTCONS_00065392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065392 ID=TCONS_00065392|Name=TCONS_00065392|organism=Clytia hemisphaerica|type=transcript|length=537bp
ATTAGGAACAACCTGCTAAATCAAGGACGGTAAAACgtactgatttaccg
tcgtcttcagatggtcaggatctagacaaCGGTCTCCTTGGATAAAAACC
CAAATATTTAAACTCTCTAATATGTCTTAGACTACGGTAATGCTTTAATA
TCCCACCAATACTTGAATTTCTTTATCTGATTTTTAGTACCAGCAAGACA
CCAGGCCCCAAGATGTAAGCATAACCTTTCAACTTCATAACTGAAAATTG
GAAATTGTTTATCTAGAATCAACAATCACGGCAATTGTTGAAACTGAAAT
GACAAcccattctcacagacccggtgggattttttcagccagtggaggGG
TGAAAATAACGGACCGAAACACGATatgttgaaatgaaaaattgagaGAA
GAAAGAGACATGTCATCAAAGATATTTATCCTTCAAGCAATGTTTTCTTA
CTTCATTTTACAACACAATTTTGCTTACTGTGTTTCTAGTTTCTATTATT
GTAATTCTAGTAGGGTTTTGAttctgatggagcccga
Run BLAST on NCBI

transcript from alignment at scaffold_439:82208..82744-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065392 ID=TCONS_00065392|Name=TCONS_00065392|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at scaffold_439:82208..82744- (Clytia hemisphaerica)
ATTAGGAACAACCTGCTAAATCAAGGACGGTAAAACGTACTGATTTACCG
TCGTCTTCAGATGGTCAGGATCTAGACAACGGTCTCCTTGGATAAAAACC
CAAATATTTAAACTCTCTAATATGTCTTAGACTACGGTAATGCTTTAATA
TCCCACCAATACTTGAATTTCTTTATCTGATTTTTAGTACCAGCAAGACA
CCAGGCCCCAAGATGTAAGCATAACCTTTCAACTTCATAACTGAAAATTG
GAAATTGTTTATCTAGAATCAACAATCACGGCAATTGTTGAAACTGAAAT
GACAACCCATTCTCACAGACCCGGTGGGATTTTTTCAGCCAGTGGAGGGG
TGAAAATAACGGACCGAAACACGATATGTTGAAATGAAAAATTGAGAGAA
GAAAGAGACATGTCATCAAAGATATTTATCCTTCAAGCAATGTTTTCTTA
CTTCATTTTACAACACAATTTTGCTTACTGTGTTTCTAGTTTCTATTATT
GTAATTCTAGTAGGGTTTTGATTCTGATGGAGCCCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040989XLOC_040989Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065392-exon-scaffold_439-1575043694:82208..82744TCONS_00065392-exon-scaffold_439-1575043694:82208..82744Clytia hemisphaericaexon
TCONS_00065392-exon-scaffold_439-1510915933:82208..82744TCONS_00065392-exon-scaffold_439-1510915933:82208..82744Clytia hemisphaericaexon
TCONS_00065392-exon-scaffold_439-1491911889:82208..82744TCONS_00065392-exon-scaffold_439-1491911889:82208..82744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:82208..82744 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.92042	2.95335	1.34716	0.479266	0	0.125628	0	0	0	0	0	0.0720365	0	0.22412	0	0	0	0.184175	0	0	0	0	0.744111	1.24026	0	0	0	0	1.08048	0.611577
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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