TCONS_00065389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065389
Unique NameTCONS_00065389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length216

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065389 ID=TCONS_00065389|Name=TCONS_00065389|organism=Clytia hemisphaerica|type=transcript|length=216bp
GAATTATCCGAAGAAGATGATTTAGAACTTTATGATCCAATTTGAGGTCT
TGCTGCTAAAGTTGCTTCGAAAGAAATTCCATCTGCCGATCTGCCGTTGG
TTTGTTCAGTCGACGAAGAAGCAAATAATAAAcgaaggaaaaaatatttt
aatttacatgaattgtaaattttttaatgctggtcattaagaataaaatg
attcTACTAGCTTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_439:79516..80531-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065389 ID=TCONS_00065389|Name=TCONS_00065389|organism=Clytia hemisphaerica|type=transcript|length=1016bp|location=Sequence derived from alignment at scaffold_439:79516..80531- (Clytia hemisphaerica)
GAATTATCCGAAGAAGATGATTTAGAACTTTATGATCCAATTTGAGGTCT
TGCTGCAANGATTTTCCTTTATCTTATTAAATGGGTAACTATAATTTAAG
TTCTGTGTAATCTTCCTTGTAGAGAGAGAGCATAAAAGACAACAATCATT
CTCAAGTTGAAGACCAAAAAGAATACAGTAACACAAGCGAAAATTGAATC
TTTCGATTTCCAACGTTTTACAAAAAGATGAAGTACGTCAATAGCTTTAT
TGTCGTTTATGCTGTGCATTGTAAGTAAAATATTGTTAGACCCCGTTGGT
TCAGGTTGGTTCATTAGCACGATACACACGATGTATGTCGCTCTTACATG
AATTTAGAAAAGAAAACAATTTTCTTGACACAGGAGTAAAGTTCAAAATT
GAAAATCTCGATCAAAATTTATTCAGAATCCATTTTTCAGAGCTAGACAT
TCGAGGGGGTTTATCTAAAGAAGCCTGCATTACTAAAAATAGACAAAATG
AACAACAAATTTCATAAAAGACGACGTATTTCGCCGTCCCCAACCCCGAC
CGAAAGTGACTGTACCACCCCTAGCGATTCATTCCCTTTCGTTTATCACG
GGAATTAACTACAGTCTAAAAGAACGACAAATTACGCATGCGTGTTACAA
TGCAGGATCCTTTAGAGGAACAGACTGTTTGTTCCTTCACTTAAGTTATG
CACTTTTTATCAAACTTTCAGGTCAATCAACAGTGGATAATGACGAAAAG
GAACTTGAATGTTTTCTCGAACAAAATGCTGAATTATTGATCAACTCCAG
CAATTATCCGAAGAAAATGATTTAGAACTTTATGATCAAATTTGAGGTCT
TGCTGCTAAAGTTGCTTCGAAAGAAATTCCATCTGCCGATCTGCCGTTGG
TTTGTTCAGTCGACGAAGAAGCAAATAATAAACGAAGGAAAAAATATTTT
AATTTACATGAATTGTAAATTTTTTAATGCTGGTCATTAAGAATAAAATG
ATTCTACTAGCTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040988XLOC_040988Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065389-exon-scaffold_439-1575043694:80486..80531TCONS_00065389-exon-scaffold_439-1575043694:80486..80531Clytia hemisphaericaexon
TCONS_00065389-exon-scaffold_439-1575043694:79516..79685TCONS_00065389-exon-scaffold_439-1575043694:79516..79685Clytia hemisphaericaexon
TCONS_00065389-exon-scaffold_439-1510915933:80486..80531TCONS_00065389-exon-scaffold_439-1510915933:80486..80531Clytia hemisphaericaexon
TCONS_00065389-exon-scaffold_439-1510915933:79516..79685TCONS_00065389-exon-scaffold_439-1510915933:79516..79685Clytia hemisphaericaexon
TCONS_00065389-exon-scaffold_439-1491911889:80486..80531TCONS_00065389-exon-scaffold_439-1491911889:80486..80531Clytia hemisphaericaexon
TCONS_00065389-exon-scaffold_439-1491911889:79516..79685TCONS_00065389-exon-scaffold_439-1491911889:79516..79685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:79516..80531 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.9024	8.74561	13.6812	28.422	0	0	0	0	0	0	0	0.876455	0	0	0	0	0	0	0	0	0	0	5.20317	11.8851	0	0	0	0	3.29472	7.44095
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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