TCONS_00065377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065377
Unique NameTCONS_00065377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065377 ID=TCONS_00065377|Name=TCONS_00065377|organism=Clytia hemisphaerica|type=transcript|length=1623bp
CTTGATTATGGCTTAAGGCCCCATCTACACAATATGAATGAGTGCTTGTT
ACTGTAATTGGGAGCATCAGTAAGTCAATTACACTATGCAAGACAAAGGC
CAACCACCACTAATAGGAATcagagaaaaagaagaacaaattgaaaatga
atcaTCACGGCAGCATAGATGCTATGCACGATCAAGCCGAAGAACAATCC
ACGTCATCAACGAAGGAGAGCAAAAagaaatccaaagaaaacctaaGCAA
GGATACAGAGGACTCCACCTTAGATGATAACAACGAAAACAACAATCTAA
TCAATGAAAAANCAATCCACGTCATCAACGAaggaaagcaaaaagaaatc
caaagaaaacctaaACAAGGATACAGAGGACTCCACCTTAGAcgataaaa
acgaaaacaacAATCTAATCAATAATAAGGataaaaagaaatccaaaaaa
gatAAATCCAATACGTCAAACAGACAACCGgtttctttcaaaacaaaata
ttttccatgGATTGTTTGCGCTACAAGCTTTGTGGTCCAGTTTTTCGTGC
TGGGCTTTTATAAAGCTTTTGGTCCGGTCTATGTGAAATTGTTACAAGAA
GAACCAGAGGGGTATGGAGGTAGCCCCGTCGCTACTTcATGGGTAGCTTC
ACTTTCCATCAGTACATCCTACCTGAGCACACCTTTATCCTTTGAAATCA
TCCGACGAATCAAGTTTCGACCCGCTATGTTGATCGGTGCTACGTTATCA
GGTCTTGGTTTGCTTGTCTCCTCATTCGCTGATAGTGTTTACATTCTCTA
CGTCACGTTCGGATTGTTGTTCGGATTCGGTTCCAGTCTGTGTTACAGTT
GCTCTCTCTTGATTCTGCCTCGTTATCATACAACATACTGGGCGTTGGCT
CATGGCATCGCACTAGCCGGGAACGGTTTAGGAGGCATGGGACTTTCACC
GGCTAATGGTATGCTTTTGGATTCTGTAGGCATCAAGAAAGGCTTCAGGA
TCATGGCTGCAGTGTCGTTTGGTGTTTTGTTTACATGTGGTTTAGTCTAC
GAGACACCTCCAGAGAAGGATCCcgctgaagaagaaaatgaagaggaCGA
TGAAGAAGATCTAGAAAGTCTTaatgaagaagatgaagaaaaattattag
aaGAAGAAGTCTTCTATCATGACACAATATGGAAGAATAAACCGCTTCTC
ATATTTCTTCTCTCCACATACTGCTTAAATTTTGGATACTACGTACCTTA
TGTCCACTTGGTAAAGTTATCACTGGACGAGGGTGTATCGAAATCACAAG
CAGACTTGTTACCAGGCTTACTTTCTCTAGCTCAGTCAGTTGGTAAAGTG
TTCATCGGCAAAGTATTCTCCTACCCTAGCGTCAACCGTATACGAGCATA
TCAACTCAGCTTGGTCGCTTTATGCATCGCAACAACTTTCGTCCCAGTCT
TATCAAAGTCATACCCAGGCTTGTTAGTCTACGCAATAGCTTTTGGATTT
TCTGACGGTTGCGGCCAGGCGACGAATATGATTATTATAGGAGATTTAGC
TGGTAAAGAATTACTACCGAAAGCTTACAGCACCTTTTTGGTATGCTCCG
CTTCTGCTTTCGTGGTTGGTCCA
Run BLAST on NCBI

transcript from alignment at scaffold_439:619966..625795+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065377 ID=TCONS_00065377|Name=TCONS_00065377|organism=Clytia hemisphaerica|type=transcript|length=5830bp|location=Sequence derived from alignment at scaffold_439:619966..625795+ (Clytia hemisphaerica)
CTTGATTATGGCTTAAGGCCCCATCTACACAATATGAATGTATGTACTCG
TTATATTATAGATTTTTCTTATGATTACTCTGTAACGTATTAAGCTAATG
CCAACAAATGCAGACACTACGAATTTAACGACGAGTGTTGACTGTATATA
CCTGTACATAAAGCCTGGCATCAGCGGTCCAACGGGAGTGTTCTTACTAT
AGGGACCTCTAGGCTATTGTATGAGATACAAAAAGCAATAATAAACCCAA
CCGCTGTCAACAACAAGTATCATATCATCTCATCTTGGCGTGCGTGCATG
GGAATGGGAAGCATCAACTACTCTTCTCTGTTCCATTATTGTTAATAGTT
TAATataatagaataaaaacataatgTAAACATACCCTTAACAATTTTCT
ATAATGGACCCAAGCTTCTATTAACTCAAACCCCCAATGATAATTGACGC
TCCTCCTTCCTGCAAATATTGTCATCAAGTATTGCAAACATCGCCTTATT
TTGATCACCCTGTAGGAGTGCTTGTTACTGTAATTGGGAGCATCAGTAAG
TCAATTACACTATGCAAGACAAAGGCCAACCACCACTAATAGTAAGActg
tattattatttttcatgtttgCTCTGATACAAAGTCTTCGAACTACATGT
TATTTTGATCCGAAGATTTTTGAGAGCTAAATAGCGTCTATTTAAATTAC
AAGATTAGCTTTTATTTGCTTGTTGGTTTGAACACATGGGTGTATTGCTT
CCAGGATGTATTTTGTTGCTACAGGCCGGCGAAACTAAATTTAAATCTGG
GCGATCGCTTAGCACAATGAGTCTAACGATTCTTAACATAGGCTGTTCTC
CAATTAAGTTAACACCCCGGGGTATATTAAGGATCATTGTCAAACTTTAA
TGGTTTATTTGGTGTAGAGTAGCTGTTTTTGTTTCAGAAACTGCTATACC
AATTTTATCACCATACTTTTAGACAGTTTTTCAGATACCATATCTATAAA
TGATTGGTAGATTGAAAACCAGTTACAAAACCATTCTAAAGACCACCTTT
GTGTGTTGGTAGAAAGTCTTCAAACTTCAACTtattttttggaacatttt
aTCTTGTTAATTTGACATGAATGCTACAACTAAACTTAAAACCCCTTCAA
AATCACGTCAAAGTATGTAGCCTGCTTTCACTAAATCCTTAGTATTCCAT
GCACGCCTTGATCTAAACTAAAATATTTGATAAGTTATGTTCTGCTGTTG
TTAAGATAGCCCTCTTGTaggggacgagatggagtttttacaagctctta
tttgatttggttggtcgttaaccagtaataaaacaattttgttacttttt
ctaaagaacgcgtcatttttattacttcaaatgaccaataattaaagtat
cttataaaaactccatcccaTCTGTCTTGTAGAGTGAGTGTTTTGCTTTG
ACCTTGAAGAAGACtttaaagaaatcttttttccaTTATTTTGCTTCTAA
AAGTATTCCTTCAGTTTGAAGGCCTCGAAAATGTTTCGTTCACTTTCCCC
TTGAACTCTTAATGTTATTTGATTAAAAATCATTATTAAAGGGGCGCCGG
GGCACTTTCTACCATCTTAGACAAAATGTGTATTTAATTATCGAACATAT
AACGCTTATAAGTGGAACAACAAAAAGTATGTCAATTCTCATGTAATTGT
ACCATCTAATTATATCCTTACCATGATTAAAGTGATTAATGCTCCTGTGG
TTTTTGTACTCTAATTATTGAGGAATATTTTTGTCCTCGGAACAGATTGA
GattcctttcttttttaaagaggtCAGTaggcttttcaaattttctggGT
GAAATAGTCTTGGTGAACTTAAAAGTCTTCCAAATATTAGAAAATGAGCT
TGAGAGCTTGGAGCCCTTTTAATTGTTTAAATTGATTGTTAAACAAAATA
TATTTAGTACTTAGAATCATTTAAAAATAACATTTATATTGCTTAAACCT
TAGGtttcttacacgttttttaataagaacatcccaaacttttgaagcct
tcggatgttcttaacatattcttattttcactattttgtgagtatttttg
cccatcttcctaagaaatcagatgtttttgagtccatgaagccttaaaat
gttctaaacttgttcttaacaatttaaccattgaagctttatgttcttat
atactttgttcttatacaaaaaaacgTGAATCAGATTCTCTCAAGAGGTT
TCTTTCTTGGAGGTCTAATCAATGTTTATCTCATCGCTTCAAAGGGTTTA
GTTTTACATAAAATGTTCCCGCTTCATATTTGGTGATGAATAATAAtttc
cctctttctgaccaatcttgctccacacccgtgtcaattcaatgtgaaaa
agcttataaattaagattgatgagtaagcagACGATATCAAGTGTATGAT
CGAGTTCTTCAATTCAGGTTTCAATTCGTTAcaaatgttgttttttgttg
ttgttgttgaaaaatTAAGATTGATAGTTGATAGCAagaacctttttatt
tttatcttcaaCGGGCCAGCACTTTGTAAGATTCTCTGATCAAATTAAAA
GTAGATAACCACTGGCATTGCGAAAATATGATTTGATTAATCTAAAAATG
AGATATGCTCAAAGAACGGTTAATGATGATCGTTTTGAAATTCTGTGAAC
CAGATACTGGCTGCTTGACAACAAACTGATTGTAACAGAGCTGATTTCTT
TTTAGACTGTTTTCTGATAGCATTATATAACATATTGAATTTCCTTTCAC
GTTTCTTCACAGGGAATcagagaaaaagaagaacaaattgaaaatgaatc
aTCACGGCAGCATAGATGCTATGCACGATCAAGCCGAAGAACAATCCACG
TCATCAACGAAGGAGAGCAAAAagaaatccaaagaaaacctaaGCAAGGA
TACAGAGGACTCCACCTTAGATGATAACAACGAAAACAACAATCTAATCA
ATGAAAAANCAATCCACGTCATCAACGAaggaaagcaaaaagaaatccaa
agaaaacctaaACAAGGATACAGAGGACTCCACCTTAGAcgataaaaacg
aaaacaacAATCTAATCAATAATAAGGataaaaagaaatccaaaaaagat
AAATCCAATACGTCAAACAGACAACCGgtttctttcaaaacaaaatattt
tccatgGATTGTTTGCGCTACAAGCTTTGTGGTCCAGTTTTTCGTGCTGG
GCTTTTATAAAGCTTTTGGTCCGGTCTATGTGAAATTGTTACAAGAAGAA
CCAGAGGGGTATGGAGGTAGCCCCGTCGCTACTTGTAAGTATTTACTTTG
CTTGCCACCATAATCTCCCAGTATCCTTGTCTCGAGAAGCTTTTAACCAA
TAGGAATGCGATTTATAAGGAGCTTTACAGTTGACGTTAGAAATAAAAGA
TTTAGGCCAGCAAAATTCCCTTTTCTCCATGTGCACAATCCTAGATTaaa
gtagagtctctttaacttgaaTGTCCTCTTAACTCGAACACGTTTTCTCG
TCCCTTTAGTTAACaaagccttataaaccttactccataactcgaaattt
cactaactcgaacaaattggTGTTCTCCGTGTGAGTTCGGGTTATGGAGA
CTCCAATGTATTgaattcattgaaatttttccttttttatagcATGGGTA
GCTTCACTTTCCATCAGTACATCCTACCTGAGCACACCTTTATCCTTTGA
AATCATCCGACGAATCAAGTTTCGACCCGCTATGTTGATCGGTGCTACGT
TATCAGGTATTCATTCAGTAATTATCCTTTAAAACTGCCTTCTCAAATTT
GATTAGATTTATCACTTTTTTCACTTCAAGCGCTTAACATGTGTCAAACA
TCTTACgaattgtttaatttttttaatcgaagaAATTCCTATATTTCAAC
GATTTTGAATTATCTATCTCGTGAATATCGAAGCTCACGGTTTCATTGAG
TTTTGTAGGATGTTAAACCCAAAATTTAATCCAAAGTAGTAGTGTGTAGT
CTAATGACTGATTTGAAAAATCCAGTTCGGACTAACTTAATAAGCAAAAT
TTTTAATCCATACGAACTAGTATGAAATTAGCATGAACAACAACAAAACT
TACTGTACAGGTCTTAGCAGGCCTACTACATTGAGCAAGGAATGTGTTCG
TGTTAGCATCCAACACGCTTAATTTCTCATAAAAGATATAATGCTACTTG
TAATAGAAGATacgtcaaatattttctttgtgtGATTCTCTGCACGATAG
ATGAGACTGCTCGATACTTTTTAAGTAGAGCGTGTTACATTAATGAGAAA
CAGATTATTTCTTTATCAATATTTAAAGTTCCAATATTTGATATTTAATG
CAACTCATACTACTGTTGTTATTTCCAGGTCTTGGTTTGCTTGTCTCCTC
ATTCGCTGATAGTGTTTACATTCTCTACGTCACGTTCGGATTGTTGTTCG
GATTCGGTTCCAGTCTGTGTTACAGTTGCTCTCTCTTGATTCTGCCTCGT
TATCATACAACATACTGGGCGTTGGCTCATGGCATCGCACTAGCCGGGAA
CGGTTTAGGAGGCATGGGACTTTCACCGGCTAATGGTATGCTTTTGGATT
CTGTAGGCATCAAGAAAGGCTTCAGGGTATGTATGTGTTATATGAAACGA
GTTAACCAATGCGAGTCTCGTACAAACTAGAAAGAAAGCTCGAGGAAGAA
ATAGTCCTAATggtttaaatcatttttgacCTTTCTTGGTTCGACgacaa
aaattaattatttgttTAAAGTTCAAATCTTGAGTTCTAAAGATGGTcat
gaaaataaatatcttATAATTTTCTACTCCCTTCTTCAGATCATGGCTGC
AGTGTCGTTTGGTGTTTTGTTTACATGTGGTTTAGTCTACGAGACACCTC
CAGAGAAGGATCCcgctgaagaagaaaatgaagaggaCGATGAAGAAGAT
CTAGAAAGTCTTaatgaagaagatgaagaaaaattattagaaGAAGAAGT
CTTCTATCATGACACAATATGGAAGAATAAACCGCTTCTCATATTTCTTC
TCTCCACATACTGCTTAAATTTTGGATACTACGTACCTTATGTCCACTTG
GTGAGTATAGTTGGTTTATAATCCCCTTGTGACTGGTGCATTTATTATTA
CCATCAGTAAAGAGATCCTTCTATTTGGTATAAACTTGGATCATTGCAAC
AAGGTATTATAGAAAACTACTTTGATTTTTAGTAAGGAATGGCGTGGCAA
GTGTGGTAAGTATGGCTAGCCAGATAATCTTCTCCGTCTGGTCTGGAACC
TTTCTATGCTTCTTCTCTAAACACTTCTGATGGTCACAGGAAATTTTGTG
CTGTTGCTGTGTTCTGGAGGACTAAAATTGTTATAAAATGTTTAATGAGT
TATATTTTGATTTCCAGGTAAAGTTATCACTGGACGAGGGTGTATCGAAA
TCACAAGCAGACTTGTTACCAGGCTTACTTTCTCTAGCTCAGTCAGTTGG
TAAAGTGTTCATCGGCAAAGTATTCTCCTACCCTAGCGTCAACCGTATAC
GAGCATATCAACTCAGCTTGGTCGCTTTATGCATCGCAACAACTTTCGTC
CCAGTCTTATCAAAGTCATACCCAGGCTTGTTAGTCTACGCAATAGCTTT
TGGATTTTCTGACGGTTGCGGCCAGGCGACGAATATGATTATTATAGGAG
ATTTAGCTGGTAAAGAATTACTACCGAAAGCTTACAGCACCTTTTTGGTA
TGCTCCGCTTCTGCTTTCGTGGTTGGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040986XLOC_040986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065377-exon-scaffold_439-1491911889:619966..620004TCONS_00065377-exon-scaffold_439-1491911889:619966..620004Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1510915933:619966..620004TCONS_00065377-exon-scaffold_439-1510915933:619966..620004Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1575043694:619966..620004TCONS_00065377-exon-scaffold_439-1575043694:619966..620004Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1491911889:620481..620556TCONS_00065377-exon-scaffold_439-1491911889:620481..620556Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1510915933:620481..620556TCONS_00065377-exon-scaffold_439-1510915933:620481..620556Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1575043694:620481..620556TCONS_00065377-exon-scaffold_439-1575043694:620481..620556Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1491911889:622778..623299TCONS_00065377-exon-scaffold_439-1491911889:622778..623299Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1510915933:622778..623299TCONS_00065377-exon-scaffold_439-1510915933:622778..623299Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1575043694:622778..623299TCONS_00065377-exon-scaffold_439-1575043694:622778..623299Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1491911889:623658..623771TCONS_00065377-exon-scaffold_439-1491911889:623658..623771Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1510915933:623658..623771TCONS_00065377-exon-scaffold_439-1510915933:623658..623771Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1575043694:623658..623771TCONS_00065377-exon-scaffold_439-1575043694:623658..623771Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1491911889:624394..624641TCONS_00065377-exon-scaffold_439-1491911889:624394..624641Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1510915933:624394..624641TCONS_00065377-exon-scaffold_439-1510915933:624394..624641Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1575043694:624394..624641TCONS_00065377-exon-scaffold_439-1575043694:624394..624641Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1491911889:624855..625115TCONS_00065377-exon-scaffold_439-1491911889:624855..625115Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1510915933:624855..625115TCONS_00065377-exon-scaffold_439-1510915933:624855..625115Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1575043694:624855..625115TCONS_00065377-exon-scaffold_439-1575043694:624855..625115Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1491911889:625433..625795TCONS_00065377-exon-scaffold_439-1491911889:625433..625795Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1510915933:625433..625795TCONS_00065377-exon-scaffold_439-1510915933:625433..625795Clytia hemisphaericaexon
TCONS_00065377-exon-scaffold_439-1575043694:625433..625795TCONS_00065377-exon-scaffold_439-1575043694:625433..625795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:619966..625795 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.34209e-06	0	0	0.110154	4.80559	0.145441	5.641	15.3582	0	0	0	0	0	0	0.196283	0	0	0	0	0	0	0	0	0	0	0	0	0	0.161346	0.106869
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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