TCONS_00065366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065366
Unique NameTCONS_00065366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1083

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065366 ID=TCONS_00065366|Name=TCONS_00065366|organism=Clytia hemisphaerica|type=transcript|length=1083bp
TTATGATGAAACAACTTGAGCAGAATTTCTGAGGaaacatgaaaataatt
taaGCTGTTTCATTCAGTTTCAATTGGAAACTTGATATTGCCTGCTTTTG
GTCAATTTATGATGTCCTATGGTTATATTCAATCCAACTCATATTTATTA
TGCTGGAACAACCTGAGCAGAATTTCTGTGAAaacgtgaaaatgtttttc
CATGGCTCAATAAAGTAGGGGTTAATTGTCTACTAAAATGACCCGTTGTC
CTATGACTATCCTAAACCAAGCTCGTGATTATAAAACCTGAGCAGAATTT
CTTAGGAcaataaatttattcaaattattatAAACGTTTCTTCATAGTAT
TCATTGATTTTCTGTTCTTTTCTAGATCGTTGTATGGCTTCCAGCCTTGT
GCAGAAAAATGGGAGTTCCCTATTGTATTGTTAAAGGAAAAGCTAGACTC
GGCAAGCTCGTCCACATGAAGACAGCCACTGCTGTCGCACTTACCGCTGT
CAAACCAGAAGATAAACACTCTTTGGAAAAGGTTGCTGAATCTGTAAAAA
CGAACTATAACGAACGATTCGATGAGATCAGACGTCactggggtggtggt
gttatgGGAAACAAATCTCAAGCTAAacttgcaaaaattgaaaaagctaa
GGCCAAAGAATTACGTTAAAATTGTGAATAAAGATATGGCTATCGACCCG
ACCTTGAAATACTATGTTGTCTTTCTCTTCACTTGGTTGTCCCTcaatct
cgtaaagtaaaaagctttttagatgATCTAACCTTGGCAGGCAAAAGATC
TTTGTCAAATGAGTATAAATAAGGCTCTAAACTCTAAATCTTTCTGGAGA
TATTATAATCAAAATCTCTTGAAATTTGGCTTAAATTATTGTTTCACTCA
ATTAAATTTGTctctcaaaagtatgtggacaaTTTAgttattttaccttt
tctcagCACCCATCCATGCTATGCTAGAAAGTTTAacattgttggaaaga
tatttctgaggagaataatctaaaagatttttgaaaaaatgtaccCCAAT
GTTGGCGTACCCCAAGCTCCAACTTTTGACagg
Run BLAST on NCBI

transcript from alignment at scaffold_439:527277..528747+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065366 ID=TCONS_00065366|Name=TCONS_00065366|organism=Clytia hemisphaerica|type=transcript|length=1471bp|location=Sequence derived from alignment at scaffold_439:527277..528747+ (Clytia hemisphaerica)
TTATGATGAAACAACTTGAGCAGAATTTCTGAGGaaacatgaaaataatt
taaGCTGTTTCATTCAGTTTCAATTGGAAACTTGATATTGCCTGCTTTTG
GTCAATTTATGATGTCCTATGGTTATATTCAATCCAACTCATATTTATTA
TGCTGGAACAACCTGAGCAGAATTTCTGTGAAaacgtgaaaatgtttttc
CATGGCTCAATAAAGTAGGGGTTAATTGTCTACTAAAATGACCCGTTGTC
CTATGACTATCCTAAACCAAGCTCGTGATTATAAAACCTGAGCAGAATTT
CTTAGGAcaataaatttattcaaattattatAAACGTTTCTTCATAGTAT
TCATTGATTTTCTGTTCTTTTCTAGATCGTTGTATGGCTTCCAGCCTTGT
GCAGAAAAATGGGAGTTCCCTATTGTATTGTTAAAGGAAAAGCTAGGTAT
GCCTTACTTATTTGTTCCTTAGATAGCGGAATGGTCAATGATTATAGAAT
ATTTGCTAAttgagaatttttgaaaagaaataccaatTTACTGAGACCAT
TGCTTCAAGTCCGCGattaattaagtttttcaatttctttcttttaagaT
AGAAAGCTTTCTTCTTGAGATCTGAAGTTTGATTAGTCTTAATCGCTCGA
GATGACGGTTTTAAGATAACGACAAAATATCCGATCAGGATTGCTCAAGT
TCTTTATAAAACTATGAATTTCATTTTGCCCAAAGAATATAATATTGGAA
ATGTATTCTCGGAGTCTTATATCAGTGACCAAATCGCCTTTTTTTCTGTT
TCGTGGTTTCAATGGTAATGTTTTGTTATTTTAGACTCGGCAAGCTCGTC
CACATGAAGACAGCCACTGCTGTCGCACTTACCGCTGTCAAACCAGAAGA
TAAACACTCTTTGGAAAAGGTTGCTGAATCTGTAAAAACGAACTATAACG
AACGATTCGATGAGATCAGACGTCactggggtggtggtgttatgGGAAAC
AAATCTCAAGCTAAacttgcaaaaattgaaaaagctaaGGCCAAAGAATT
ACGTTAAAATTGTGAATAAAGATATGGCTATCGACCCGACCTTGAAATAC
TATGTTGTCTTTCTCTTCACTTGGTTGTCCCTcaatctcgtaaagtaaaa
agctttttagatgATCTAACCTTGGCAGGCAAAAGATCTTTGTCAAATGA
GTATAAATAAGGCTCTAAACTCTAAATCTTTCTGGAGATATTATAATCAA
AATCTCTTGAAATTTGGCTTAAATTATTGTTTCACTCAATTAAATTTGTc
tctcaaaagtatgtggacaaTTTAgttattttaccttttctcagCACCCA
TCCATGCTATGCTAGAAAGTTTAacattgttggaaagatatttctgagga
gaataatctaaaagatttttgaaaaaatgtaccCCAATGTTGGCGTACCC
CAAGCTCCAACTTTTGACagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040982XLOC_040982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065366-exon-scaffold_439-1491911889:527277..527722TCONS_00065366-exon-scaffold_439-1491911889:527277..527722Clytia hemisphaericaexon
TCONS_00065366-exon-scaffold_439-1510915933:527277..527722TCONS_00065366-exon-scaffold_439-1510915933:527277..527722Clytia hemisphaericaexon
TCONS_00065366-exon-scaffold_439-1575043694:527277..527722TCONS_00065366-exon-scaffold_439-1575043694:527277..527722Clytia hemisphaericaexon
TCONS_00065366-exon-scaffold_439-1491911889:528111..528747TCONS_00065366-exon-scaffold_439-1491911889:528111..528747Clytia hemisphaericaexon
TCONS_00065366-exon-scaffold_439-1510915933:528111..528747TCONS_00065366-exon-scaffold_439-1510915933:528111..528747Clytia hemisphaericaexon
TCONS_00065366-exon-scaffold_439-1575043694:528111..528747TCONS_00065366-exon-scaffold_439-1575043694:528111..528747Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:527277..528747 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
892.748	927.69	982.458	1041.94	894.305	688.784	1079.45	1096.42	1506.76	1278.82	1505.03	1865.45	1960.64	1922.65	1838.81	1688.69	1905.48	1972.92	970.716	1045.86	1867.26	1841.89	1374.21	1286.04	1412.85	1521.85	1676.49	1654.64	1105.18	1140.47
Blast
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BLAST of TCONS_00065366 vs. Swiss-Prot (Human)
Match: RL7A (60S ribosomal protein L7a OS=Homo sapiens GN=RPL7A PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.451e-29
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:  376 IVVWLPALCRKMGVPYCIVKGKARLGKLVHMKXXXXXXXXXXKPEDKHSLEKVAESVKTNYNERFDEIRRHWGGGVMGNKS 618
            +VV+LPALCRKMGVPYCI+KGKARLG+LVH KT T VA T V  EDK +L K+ E+++TNYN+R+DEIRRHWGG V+G KS
Sbjct:  166 LVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246
The following BLAST results are available for this feature:
BLAST of TCONS_00065366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL7A1.451e-2970.3760S ribosomal protein L7a OS=Homo sapiens GN=RPL7A... [more]
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