TCONS_00065338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065338
Unique NameTCONS_00065338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065338 ID=TCONS_00065338|Name=TCONS_00065338|organism=Clytia hemisphaerica|type=transcript|length=275bp
GGCGGTAATGCCATCATCGGTCGAAAAACTGGTGGTGGTTGATGTGGTGG
TGGTGGAGGTGGTCGTGGTGGAGGTTGTCGTGGTGGAGGTTGTCGTGGTG
GAGGTTGTCGGTGCTGCGGTGGTAGTAGTGGTGGTTGGGGTGGTGGTGGC
AAAGCAAATATTTGCATGTGACGTTGTTGGGCCATTTTCTAgaacataaa
atgaaaaaggGCCGTTCATCTTTTGTTACAGGGATATTTGGTAATCTACT
ATGCAAGATTTGAAGCCATTATTTC
Run BLAST on NCBI

transcript from alignment at scaffold_439:86730..87079+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065338 ID=TCONS_00065338|Name=TCONS_00065338|organism=Clytia hemisphaerica|type=transcript|length=350bp|location=Sequence derived from alignment at scaffold_439:86730..87079+ (Clytia hemisphaerica)
GGCGGTAATGCCATCATCGGTCGAAAAACTGGTGGTGGTTGATGTGGTGG
TGGTGGAGGTTGTCGTGGTTGAAGTGGTCGTGGTGGAGGTGGTCGTGGTG
GAGGTTGTCGTGGTTGAAGTGGTCGTGGTTGAAGTGGTCGTGGTGGAGGT
TGTCGTGGTGGAGGTTGTCGTGGTGGAGGTTGTCGGTGCTGCGGTGGTAG
TAGTGGTGGTTGGGGTGGTGGTGGCAAAGCAAATATTTGCATGTGACGTT
GTTGGGCCATTTTCTAgaacataaaatgaaaaaggGCCGTTCATCTTTTG
TTACAGGGATATTTGGTAATCTACTATGCAAGATTTGAAGCCATTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040970XLOC_040970Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065338-exon-scaffold_439-1491911889:86730..86787TCONS_00065338-exon-scaffold_439-1491911889:86730..86787Clytia hemisphaericaexon
TCONS_00065338-exon-scaffold_439-1510915933:86730..86787TCONS_00065338-exon-scaffold_439-1510915933:86730..86787Clytia hemisphaericaexon
TCONS_00065338-exon-scaffold_439-1575043694:86730..86787TCONS_00065338-exon-scaffold_439-1575043694:86730..86787Clytia hemisphaericaexon
TCONS_00065338-exon-scaffold_439-1491911889:86818..86832TCONS_00065338-exon-scaffold_439-1491911889:86818..86832Clytia hemisphaericaexon
TCONS_00065338-exon-scaffold_439-1510915933:86818..86832TCONS_00065338-exon-scaffold_439-1510915933:86818..86832Clytia hemisphaericaexon
TCONS_00065338-exon-scaffold_439-1575043694:86818..86832TCONS_00065338-exon-scaffold_439-1575043694:86818..86832Clytia hemisphaericaexon
TCONS_00065338-exon-scaffold_439-1491911889:86878..87079TCONS_00065338-exon-scaffold_439-1491911889:86878..87079Clytia hemisphaericaexon
TCONS_00065338-exon-scaffold_439-1510915933:86878..87079TCONS_00065338-exon-scaffold_439-1510915933:86878..87079Clytia hemisphaericaexon
TCONS_00065338-exon-scaffold_439-1575043694:86878..87079TCONS_00065338-exon-scaffold_439-1575043694:86878..87079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:86730..87079 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.632104	0	0	0	0.563272	0	0.636199	0.445418	0	0	0	0	0	0	0	0.396798	0.406705	0	0	0	0	0	0.684003	0	0.506485	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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