TCONS_00065327 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065327
Unique NameTCONS_00065327
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065327 ID=TCONS_00065327|Name=TCONS_00065327|organism=Clytia hemisphaerica|type=transcript|length=510bp
TTCTTTTCAGGTTAAAGAAGAGACAGACCGTCCTTCCAGACGATCAATTG
GTATTGGATGAAACCCATTCAACCTCATCTTCAATAACAAATAAGAGCCT
CTCTTCCGCTCATGAAGTCGAAAACGACGCTGATGAGAAAAAAGAGCCAG
TACAAACAGATTATGTGATGGAGTTTAAAGGAGTTGACGAATATGATTGA
GTGCTTATAATACTGGTGCATTGGAGCGATGTCATGATTATATGACGTCG
AGGATTCAGACCGACGTTAATGCAGTtcactctcgctaattcgaactggA
ACAGggaaatcttatttgttcgaataacagagagtttcgaatcatagaaa
gcattttaagagggtttctccctGACGGAAATTGActtatagaaagattc
aaataatggGAGTACGAATAAGCGAGAGCTTATACTCTAGTCTCCATTTG
GAAAGAATGTTTATTTGTGAACATTTATAAAACTCTTTTTGGACACGTCT
CAATGAAGTC
Run BLAST on NCBI

transcript from alignment at scaffold_437:75484..76283-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065327 ID=TCONS_00065327|Name=TCONS_00065327|organism=Clytia hemisphaerica|type=transcript|length=800bp|location=Sequence derived from alignment at scaffold_437:75484..76283- (Clytia hemisphaerica)
TTCTTTTCAGGTTAAAGAAGAGACAGACCGGTGAGTAATTTTTTCATTTA
TAAATACATATAAGTCACAAACTGTTTATGGTCTTACACGATTTCCAAAT
GGTGCATATCACGTCTATCTGTTTCTGCTTCATAGTCTTATGTTCCTATC
ATGTTGTAAAGTGTTTGTAGCCTTACCCTTCCCACTATCACAGTCCTTCC
AGACGATCTTTTTTATCGCCTCAAGAAGAAAAAAAACTTTTTATTCTACA
AATTGTAGTTTCATGCCACATCTTTAGGCAACAAAAAGCTTCTTATAATC
TATCGTTTTATGCTTCATAGTCCTTCCAGACGATCAATTGGTATTGGATG
AAACCCATTCAACCTCATCTTCAATAACAAATAAGAGCCTCTCTTCCGCT
CATGAAGTCGAAAACGACGCTGATGAGAAAAAAGAGCCAGTACAAACAGA
TTATGTGATGGAGTTTAAAGGAGTTGACGAATATGATTGAGTGCTTATAA
TACTGGTGCATTGGAGCGATGTCATGATTATATGACGTCGAGGATTCAGA
CCGACGTTAATGCAGTTCACTCTCGCTAATTCGAACTGGAACAGGGAAAT
CTTATTTGTTCGAATAACAGAGAGTTTCGAATCATAGAAAGCATTTTAAG
AGGGTTTCTCCCTGACGGAAATTGACTTATAGAAAGATTCAAATAATGGG
AGTACGAATAAGCGAGAGCTTATACTCTAGTCTCCATTTGGAAAGAATGT
TTATTTGTGAACATTTATAAAACTCTTTTTGGACACGTCTCAATGAAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040962XLOC_040962Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065327-exon-scaffold_437-1575043694:76254..76283TCONS_00065327-exon-scaffold_437-1575043694:76254..76283Clytia hemisphaericaexon
TCONS_00065327-exon-scaffold_437-1575043694:75484..75963TCONS_00065327-exon-scaffold_437-1575043694:75484..75963Clytia hemisphaericaexon
TCONS_00065327-exon-scaffold_437-1510915933:76254..76283TCONS_00065327-exon-scaffold_437-1510915933:76254..76283Clytia hemisphaericaexon
TCONS_00065327-exon-scaffold_437-1510915933:75484..75963TCONS_00065327-exon-scaffold_437-1510915933:75484..75963Clytia hemisphaericaexon
TCONS_00065327-exon-scaffold_437-1491911889:76254..76283TCONS_00065327-exon-scaffold_437-1491911889:76254..76283Clytia hemisphaericaexon
TCONS_00065327-exon-scaffold_437-1491911889:75484..75963TCONS_00065327-exon-scaffold_437-1491911889:75484..75963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_437supercontigscaffold_437:75484..76283 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0419048	0	0.713383	0	2.04474	2.69292	0.982866	0.450473	2.41302	2.198	2.36762	0.740573	3.1411	1.70262	6.59271	2.00913	0.812375	1.92144	0.635834	2.01916	0	0	0.579877	0.163467	0.268763	0.620835
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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