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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065323 ID=TCONS_00065323|Name=TCONS_00065323|organism=Clytia hemisphaerica|type=transcript|length=708bp
CTCagatttttctcaaaagatTTTGCGTGTCAAGAAAAGAAACTTTATAT
ATAGAAAAAAATCCTATTATATGTTGCTATGAATttacaaaataataata
ataaaaaaagtaaagataataattaaaaacatgtatttaaagAACGTGTG
AAAATTTTGCTTCCATTTTCTACGTAGGTATACTTGAATGGTATTGTCGG
ATGATTTTGGAATTTGAGTGACTCAATGTTTAAAGATTTCCAAAAGTTAG
GaccaaaatttttgtttttggtaaTGGTTATATgttatatatatagtatg
aaaataaaatgttttctcctgtctgatctacaaacaacaaagagtggccg
aattgtttttcctcttagagagacgatgttacaatGAAAGGGCAAATATA
TCTGACATAAAAAATTTGTTGCTCCAAATCGAATTAGAGTGGGTCGGTTG
GTCTTTTCTCCATTGAAGAAgaatgaaaagttgaaaatgagGCTGAAAAC
TTTGCTATTGACCTAAATGTTAGTTtgcattaaaaatatttaaaatcagg
GACGTTTTAGGGTGCCGATTTCTTTTTGCGAGTTTTTAATATCAAACAAA
TGCCAGATTTTCGTTATTTATCTTTTTTGCTGTCAAATTTCTATGAATTG
GCTATGTAATTCTGTGAACTGGCGGTTGCATAGTGAGCATCGGTAGCTAT
ATTTATTC Run BLAST on NCBI transcript from alignment at scaffold_437:14764..17751+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065323 ID=TCONS_00065323|Name=TCONS_00065323|organism=Clytia hemisphaerica|type=transcript|length=2988bp|location=Sequence derived from alignment at scaffold_437:14764..17751+ (Clytia hemisphaerica)
CTCagatttttctcaaaagatTTTGCGTGTCAAGAAAAGAAACTTTATAT
ATAGAAAAAAATCCTATTATATGTTGCTATGAATttacaaaataataata
ataaaaaaagtaaagataataattaaaaacatgtatttaaaggtgggagt
cacatgaagaatgcggaaaattgaaattttacatttttcatcataacttt
tgaagcagaaaagatttctaaatgaaactttcaagaaatgtaatataaca
atagacaatgtgaaaaattaaaaaaaaattctaaaaatagccaagacggg
ggtaatatcagccagggggtaatACACTATCAAAATACTTTGGCAGCGTT
TcagaaaaatctataaaagctattccaaaaattttttttggaggtTGCTA
GTACTTGGATAAGCTGTGGAATGAAtggataattttttcaaaatttcatt
ccagggggtctggaacataaaaaatggaaaatttgagttttaaagaaaaa
attgaatttttctagattttttcaaaaatctaatcCATTCATTCCATAGC
AAACCATAAATGGAGcaactcctgaaaatttcatgaacATAGCTCTTTCC
AATCCCGAGAAAACGTTGCCAAGGTGTGCGAAAACCCCCTGAAAcctatt
ttgagaaaacggTTCGTAAAGTCAGAAGTAGATATAtctacaatgtatag
caatgtgccctcccggttattaccataatggctttatggcaactcctgaa
cttgggcacaggatgtacggtttaAGTAAGTAAGTGTAAGTAGATATATC
TCTCTATTTCTCTGTAATAAATCGACCGTTATACAAAATTCTTTCTCTGT
TCGACAAAAATGGAATAAAGTTCTACTTTATATACTTTAGAAAAGgcttt
caaatatcaaaatggtccagaaattccaaattatcaCTTTCACAGGATGT
GCgccaatccttaaaattttgcgccaaactccacgtcaacattgatttaa
gtcaatttaAGTATGTTTTCACAGCAAATACcatattttcaatgtaatag
aTCATCCTAGTATATTTTCCTCACTGATAAGTTAATTTAAAGATGATCTG
TTGTGATACAAGAATCCACTTGGATATCTACCCGTGCACGATTTCTCCTG
ACTGTAAATAATCCAGCCAGAGCGCAGAGGGCGCGAAGGGAGTGTCGCAG
ACCTTCAATAATTTATCACACACAATTGTTAAACCAGCCTCCAGGCTTTC
AATTCCCTAAACACTTGGATctttaaatagatacatcattgaatatgCCT
TTCGTCTCTTTGTCCTTCAAAGTTTTTCGGTACAGTAGGTGTCGTCGTCA
AACTAAGTTCATATCGGAAACGTTGAGTTTGAGAATCAAGTCTTTGGTTT
CACTTAACTCAAGCTTTCTTAGTTGAGAAGAATGACATTAAAGAGTAAAA
AATGTCAGTCAATCCAACATTTCCCAATTAAAGCAGTTTTCATAGTCAAA
AACGCTGCTGACTGGCTGGTGGCTGGACAGCCTCCAAAATTTGGAAAGAT
CTAgtttcaatcaccaattccgcccttcccctctttttctctattttcta
tctctaactctgtttttttctgatttctggacttagtttttctgaatttg
actATTTGAAGCTATTTTGCTAATTCTGAAACTATACTCCCACACCTCGG
TTCatgcaattcataacatattataccgaactagtaaaagacgggggtaa
tgttattataatatgggtaaaagtaccccttttttaaacctgactgaaat
tcgagccgttactagcaaccctgcggggcccaaggcgccgagtatgcacc
cggcacagtgacaaaccgttactagcaaccctgcggggcccaaggcgccg
agtatgcacccggcacagtgacaaaccgttactagcaaccctggaCCCTA
GCTAATAATCGAATCCTGACCCCCGGAAAATTACAACGGactagaaagaa
cgaaaaaaattgaaggggcggaattgctgattgaaaccAGTTTTCACCCC
AAAATTTGTATGTATATCACTTCTTTAGTTACCATCTTTGATATTAGGAA
ATCCCGCGaaaaaaaggcggtattgacttagacgcccgaaaagggcgtaa
aaagatctTTCGTTTGGTATGTCATGATCCTATGTTTAGATCAGCCATAA
AGAAATCAGGCCCTAGCAACGGGTATGACTTTtcgttgctaaggaaaata
ctttagatcagggtctagaaaaaaccttatatctctggaaatataaatgc
tacggccttaaaattttcagggtGTATTCAGAAAGGGTATAGGATCATGA
AACGCGCAAAATCCCGAAttcgataattttttcaccaaatctcaaAGCTT
CATGTGACTCGCACCTTTTAAGAACGTGTGAAAATTTTGCTTCCATTTTC
TACGTAGGTATACTTGAATGGTATTGTCGGATGATTTTGGAATTTGAGTG
ACTCAATGTTTAAAGATTTCCAAAAGTTAGGaccaaaatttttgtttttg
gtaaTGGTTATATgttatatatatagtatgaaaataaaatgttttctcct
gtctgatctacaaacaacaaagagtggccgaattgtttttcctcttagag
agacgatgttacaatGAAAGGGCAAATATATCTGACATAAAAAATTTGTT
GCTCCAAATCGAATTAGAGTGGGTCGGTTGGTCTTTTCTCCATTGAAGAA
gaatgaaaagttgaaaatgagGCTGAAAACTTTGCTATTGACCTAAATGT
TAGTTtgcattaaaaatatttaaaatcaggGACGTTTTAGGGTGCCGATT
TCTTTTTGCGAGTTTTTAATATCAAACAAATGCCAGATTTTCGTTATTTA
TCTTTTTTGCTGTCAAATTTCTATGAATTGGCTATGTAATTCTGTGAACT
GGCGGTTGCATAGTGAGCATCGGTAGCTATATTTATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065323-exon-scaffold_437-1491911889:14764..14905 | TCONS_00065323-exon-scaffold_437-1491911889:14764..14905 | Clytia hemisphaerica | exon |
| TCONS_00065323-exon-scaffold_437-1510915933:14764..14905 | TCONS_00065323-exon-scaffold_437-1510915933:14764..14905 | Clytia hemisphaerica | exon |
| TCONS_00065323-exon-scaffold_437-1575043694:14764..14905 | TCONS_00065323-exon-scaffold_437-1575043694:14764..14905 | Clytia hemisphaerica | exon |
| TCONS_00065323-exon-scaffold_437-1491911889:17186..17751 | TCONS_00065323-exon-scaffold_437-1491911889:17186..17751 | Clytia hemisphaerica | exon |
| TCONS_00065323-exon-scaffold_437-1510915933:17186..17751 | TCONS_00065323-exon-scaffold_437-1510915933:17186..17751 | Clytia hemisphaerica | exon |
| TCONS_00065323-exon-scaffold_437-1575043694:17186..17751 | TCONS_00065323-exon-scaffold_437-1575043694:17186..17751 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_437 | supercontig | scaffold_437:14764..17751 + |
Blast
The following BLAST results are available for this feature:
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