TCONS_00065322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065322
Unique NameTCONS_00065322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065322 ID=TCONS_00065322|Name=TCONS_00065322|organism=Clytia hemisphaerica|type=transcript|length=609bp
ctgaaattttttattaaCTTCCTCCAACAAATAGATATACTAGTCATTTT
AACAAAATGAGATTTTCGAACTCGTATATCTTGCTAGGTATGCCTTAAAA
GTCGCAATgctttaaagacttttttagaAAAGCTAGGTGTCGACTAGGTG
ATATTTTGATATTAGTTTTGATCAGgcttattttgaaatataacaGCATA
ATCGATTTTTATCTATTTCGGATTTTTTAACCCCGCAATTGCAAAATTGG
CGAAGTACGCCTTGAGGTTAAATGAGCAATATTGCTAAACTTTTTTGATG
ACTGTCCGACTGTTTATGTCGTTTCAATATTTGAAAGCTTTCAGCTTTGT
AATGTTATTACCCGTAACCAGCTTTTAATAGGGCTTCATTGTGCAAGCGG
CATACATTTATGTGCTTAATTGTATAATTAATAAAGTAGGGgtaatttta
gtgattttagtGATTTTCCCTTGcgattttttcaaactttttgtggCAAA
AGTCATATAATTTGGGGGTCAAATTCATTCACATTTTCGTTGCCATTGTC
ATCTACTTTTTACATCATACCAACTTGTTTGAATTATAGTTTTTTAACTT
TGTAGGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_436:17527..18135

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065322 ID=TCONS_00065322|Name=TCONS_00065322|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at scaffold_436:17527..18135 (Clytia hemisphaerica)
ATTCCTACAAAGTTAAAAAACTATAATTCAAACAAGTTGGTATGATGTAA
AAAGTAGATGACAATGGCAACGAAAATGTGAATGAATTTGACCCCCAAAT
TATATGACTTTTGccacaaaaagtttgaaaaaatcgCAAGGGAAAATCac
taaaatcactaaaattacCCCTACTTTATTAATTATACAATTAAGCACAT
AAATGTATGCCGCTTGCACAATGAAGCCCTATTAAAAGCTGGTTACGGGT
AATAACATTACAAAGCTGAAAGCTTTCAAATATTGAAACGACATAAACAG
TCGGACAGTCATCAAAAAAGTTTAGCAATATTGCTCATTTAACCTCAAGG
CGTACTTCGCCAATTTTGCAATTGCGGGGTTAAAAAATCCGAAATAGATA
AAAATCGATTATGCtgttatatttcaaaataagcCTGATCAAAACTAATA
TCAAAATATCACCTAGTCGACACCTAGCTTTtctaaaaaagtctttaaag
cATTGCGACTTTTAAGGCATACCTAGCAAGATATACGAGTTCGAAAATCT
CATTTTGTTAAAATGACTAGTATATCTATTTGTTGGAGGAAGttaataaa
aaatttcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040959XLOC_040959Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065322-exon-scaffold_436-1491911889:17527..18135TCONS_00065322-exon-scaffold_436-1491911889:17527..18135Clytia hemisphaericaexon
TCONS_00065322-exon-scaffold_436-1510915933:17527..18135TCONS_00065322-exon-scaffold_436-1510915933:17527..18135Clytia hemisphaericaexon
TCONS_00065322-exon-scaffold_436-1575043694:17527..18135TCONS_00065322-exon-scaffold_436-1575043694:17527..18135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_436supercontigscaffold_436:17527..18135 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.100424	0	0.358828	0.0945169	0.456122	0.213508	0.672669	1.01837	0.718874	0.590699	0.235951	0	0	0	0	0	0	0	0	0	0	0	0.476136	0.679904	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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