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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065317 ID=TCONS_00065317|Name=TCONS_00065317|organism=Clytia hemisphaerica|type=transcript|length=1363bp
TAGATGGCAAACAATAGTAGTAATTCATCTTACTTCGGCGGCATGGAGTC
ATACCCCGTAGATTGGAGTATGCCGGAGAAAATGACACCGCAATTTAAAC
TTGGATTGAGTATTTATTACAGCGTTTTGATCTCTATAGCTGTTCTCTTC
AATGTAATTCTGATTGGAACAATTTGCTCCAGACGTAAGCTACTGACCGT
TACCAATATCCTGGTCATGAACCTTGCCATTGGTGATCTAGTAACGTCCA
TATTGGTGGTGCCTTTCGATATTGAATTACTTCTACGAGGCATATTCCCG
TTTGGAAAAGTGATGTGCGCATTCAGTTCGATGGCATTCTTGCTATCGTT
ACCAAGCTCCGTGTTTTGTTTACTGTTGCTAACCATGGAACGTTTCGTTT
CCATTGTTTTCCCGTTCCATCGAATCCGATATATCCGAAAACGAAACACA
TTAATAGCGATCGGAATTGCATGGGCATACAGTTTATTGTTCGCTATCAT
TCCTCTGTTTTCAAAGGAAGAAGTTGTAGTAATCTGGATGGAACAATGTC
ATTTCTTATACTCTTACGACTACCTGTACATGCAGCTGGGATTAAACTTC
CTTTTACCTGTTTGTATTATAGTCACCATGAATTTGGTTTTGTTTCGAGT
CGCCAGTAAACATGCATGTGATATGAAAAGACGCTCACTGATTGGTTCAA
ATCATAAAGTCAGACCAAGTATGATTAAACTTGGTGCCAACATCAAAGCA
GCCAAAACAGTCTTGGTTCTCGTCTTTCTTTTCTTGGTCAGCTGGTTAAC
GTTGATTCTACTTACTTTCCTGAACTCTTTATGTAAAATTTGCCATCCAG
AATACGTCACATATCTTGGCAACGCCATTAACTTTTCATCCATCGCATTA
AATCCAGTCTTGTACGGACTACGTAACTCAGAAATTCGCCGTCAAATCAA
TATACAGAAGAGAAATTTCCTGAGCTTATTTTGCCCGTCCTATGCTAAAG
TGCCGGCATCCGATCGCTCGATGGATTCATCTGTTTACACAACACATTAC
GATGTCAATTCAAGAAAATCGTCGTTTGCCGTAACTTTTATCACTGAAAG
TGAAACTTAAAAGaaataaactttgaaaaaataaaattattccaTACGCA
TTTGTCTTTTCAAGAAAGAACTAGTCCGGAAACAGCCTATCGTTGCTATC
AGCCACTACTACCAGACGACTTTTTCGTTAGAGAACGTTTATAAAGGTCA
ATACCAAAAGAACTTCGTCACTACTCCTTTATACTCAACTGTAAATAGTT
TGCCTAAACTGTATATCAAATAATAAAAATCGTGTGTAAACCGTGTTAAT
ATACAGCCTGatg Run BLAST on NCBI protein sequence of TCONS_00065317-protein >TCONS_00065317-protein ID=TCONS_00065317-protein|Name=TCONS_00065317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MANNSSNSSYFGGMESYPVDWSMPEKMTPQFKLGLSIYYSVLISIAVLFN
VILIGTICSRRKLLTVTNILVMNLAIGDLVTSILVVPFDIELLLRGIFPF
GKVMCAFSSMAFLLSLPSSVFCLLLLTMERFVSIVFPFHRIRYIRKRNTL
IAIGIAWAYSLLFAIIPLFSKEEVVVIWMEQCHFLYSYDYLYMQLGLNFL
LPVCIIVTMNLVLFRVASKHACDMKRRSLIGSNHKVRPSMIKLGANIKAA
KTVLVLVFLFLVSWLTLILLTFLNSLCKICHPEYVTYLGNAINFSSIALN
PVLYGLRNSEIRRQINIQKRNFLSLFCPSYAKVPASDRSMDSSVYTTHYD
VNSRKSSFAVTFITESET Run BLAST on NCBI transcript from alignment at scaffold_435:358769..360131 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065317 ID=TCONS_00065317|Name=TCONS_00065317|organism=Clytia hemisphaerica|type=transcript|length=1363bp|location=Sequence derived from alignment at scaffold_435:358769..360131 (Clytia hemisphaerica)
catCAGGCTGTATATTAACACGGTTTACACACGATTTTTATTATTTGATA
TACAGTTTAGGCAAACTATTTACAGTTGAGTATAAAGGAGTAGTGACGAA
GTTCTTTTGGTATTGACCTTTATAAACGTTCTCTAACGAAAAAGTCGTCT
GGTAGTAGTGGCTGATAGCAACGATAGGCTGTTTCCGGACTAGTTCTTTC
TTGAAAAGACAAATGCGTAtggaataattttattttttcaaagtttattt
CTTTTAAGTTTCACTTTCAGTGATAAAAGTTACGGCAAACGACGATTTTC
TTGAATTGACATCGTAATGTGTTGTGTAAACAGATGAATCCATCGAGCGA
TCGGATGCCGGCACTTTAGCATAGGACGGGCAAAATAAGCTCAGGAAATT
TCTCTTCTGTATATTGATTTGACGGCGAATTTCTGAGTTACGTAGTCCGT
ACAAGACTGGATTTAATGCGATGGATGAAAAGTTAATGGCGTTGCCAAGA
TATGTGACGTATTCTGGATGGCAAATTTTACATAAAGAGTTCAGGAAAGT
AAGTAGAATCAACGTTAACCAGCTGACCAAGAAAAGAAAGACGAGAACCA
AGACTGTTTTGGCTGCTTTGATGTTGGCACCAAGTTTAATCATACTTGGT
CTGACTTTATGATTTGAACCAATCAGTGAGCGTCTTTTCATATCACATGC
ATGTTTACTGGCGACTCGAAACAAAACCAAATTCATGGTGACTATAATAC
AAACAGGTAAAAGGAAGTTTAATCCCAGCTGCATGTACAGGTAGTCGTAA
GAGTATAAGAAATGACATTGTTCCATCCAGATTACTACAACTTCTTCCTT
TGAAAACAGAGGAATGATAGCGAACAATAAACTGTATGCCCATGCAATTC
CGATCGCTATTAATGTGTTTCGTTTTCGGATATATCGGATTCGATGGAAC
GGGAAAACAATGGAAACGAAACGTTCCATGGTTAGCAACAGTAAACAAAA
CACGGAGCTTGGTAACGATAGCAAGAATGCCATCGAACTGAATGCGCACA
TCACTTTTCCAAACGGGAATATGCCTCGTAGAAGTAATTCAATATCGAAA
GGCACCACCAATATGGACGTTACTAGATCACCAATGGCAAGGTTCATGAC
CAGGATATTGGTAACGGTCAGTAGCTTACGTCTGGAGCAAATTGTTCCAA
TCAGAATTACATTGAAGAGAACAGCTATAGAGATCAAAACGCTGTAATAA
ATACTCAATCCAAGTTTAAATTGCGGTGTCATTTTCTCCGGCATACTCCA
ATCTACGGGGTATGACTCCATGCCGCCGAAGTAAGATGAATTACTACTAT
TGTTTGCCATCTA Coding sequence (CDS) from alignment at scaffold_435:358769..360131 >TCONS_00065317 ID=TCONS_00065317|Name=TCONS_00065317|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_435:358769..360131 (Clytia hemisphaerica)
TTAAGTTTCACTTTCAGTGATAAAAGTTACGGCAAACGACGATTTTCTTG
AATTGACATCGTAATGTGTTGTGTAAACAGATGAATCCATCGAGCGATCG
GATGCCGGCACTTTAGCATAGGACGGGCAAAATAAGCTCAGGAAATTTCT
CTTCTGTATATTGATTTGACGGCGAATTTCTGAGTTACGTAGTCCGTACA
AGACTGGATTTAATGCGATGGATGAAAAGTTAATGGCGTTGCCAAGATAT
GTGACGTATTCTGGATGGCAAATTTTACATAAAGAGTTCAGGAAAGTAAG
TAGAATCAACGTTAACCAGCTGACCAAGAAAAGAAAGACGAGAACCAAGA
CTGTTTTGGCTGCTTTGATGTTGGCACCAAGTTTAATCATACTTGGTCTG
ACTTTATGATTTGAACCAATCAGTGAGCGTCTTTTCATATCACATGCATG
TTTACTGGCGACTCGAAACAAAACCAAATTCATGGTGACTATAATACAAA
CAGGTAAAAGGAAGTTTAATCCCAGCTGCATGTACAGGTAGTCGTAAGAG
TATAAGAAATGACATTGTTCCATCCAGATTACTACAACTTCTTCCTTTGA
AAACAGAGGAATGATAGCGAACAATAAACTGTATGCCCATGCAATTCCGA
TCGCTATTAATGTGTTTCGTTTTCGGATATATCGGATTCGATGGAACGGG
AAAACAATGGAAACGAAACGTTCCATGGTTAGCAACAGTAAACAAAACAC
GGAGCTTGGTAACGATAGCAAGAATGCCATCGAACTGAATGCGCACATCA
CTTTTCCAAACGGGAATATGCCTCGTAGAAGTAATTCAATATCGAAAGGC
ACCACCAATATGGACGTTACTAGATCACCAATGGCAAGGTTCATGACCAG
GATATTGGTAACGGTCAGTAGCTTACGTCTGGAGCAAATTGTTCCAATCA
GAATTACATTGAAGAGAACAGCTATAGAGATCAAAACGCTGTAATAAATA
CTCAATCCAAGTTTAAATTGCGGTGTCATTTTCTCCGGCATACTCCAATC
TACGGGGTATGACTCCATGCCGCCGAAGTAAGATGAATTACTACTATTGT
TTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065317-exon-scaffold_435-1491911889:358769..360131 | TCONS_00065317-exon-scaffold_435-1491911889:358769..360131 | Clytia hemisphaerica | exon |
| TCONS_00065317-exon-scaffold_435-1510915933:358769..360131 | TCONS_00065317-exon-scaffold_435-1510915933:358769..360131 | Clytia hemisphaerica | exon |
| TCONS_00065317-exon-scaffold_435-1575043694:358769..360131 | TCONS_00065317-exon-scaffold_435-1575043694:358769..360131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:358769..360131 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00065317 vs. Swiss-Prot (Human)
Match: ADRB1 (Beta-1 adrenergic receptor OS=Homo sapiens GN=ADRB1 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 1.409e-17 Identity = 52/205 (25.37%), Postives = 105/205 (51.22%), Query Frame = 1
Query: 73 PEKMTPQFKLGLSIYYSVLISIAVLFNVILIGTICSRRKLLTVTNILVMNLAIGDLVTSILVVPFDIELLLRGIFPFGKVMCAFSSMAFLLSLPSSVFCLLLLTMERFVSIVFPFHRIRYIRKRNTLIAIGIAWAYSLLFAIIPLF------SKEEVVVIWMEQ--CHFLYSYDYLYMQLGLNFLLPVCIIVTMNLVLFRVASKH 663
PE ++ Q+ G+ + ++++ + V NV++I I +L T+TN+ +M+LA DLV +LVVPF +++ G + +G C + +L + +S+ L ++ ++R+++I PF + + + WA S L + +P+ +E + + C F+ + Y ++F +P+CI+ + L +FR A K
Sbjct: 50 PEPLSQQWTAGMGLLMALIVLLIVAGNVLVIVAIAKTPRLQTLTNLFIMSLASADLVMGLLVVPFGATIVVWGRWEYGSFFCELWTSVDVLCVTASIETLCVIALDRYLAITSPFRYQSLLTRARARGLVCTVWAISALVSFLPILMHWWRAESDEARRCYNDPKCCDFVTNRAYAIASSVVSFYVPLCIMAFVYLRVFREAQKQ 254
The following BLAST results are available for this feature:
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