TCONS_00065312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065312
Unique NameTCONS_00065312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065312 ID=TCONS_00065312|Name=TCONS_00065312|organism=Clytia hemisphaerica|type=transcript|length=862bp
TTTCCTCTtctcaaaatttatgaaaacaatttttttctatcagGTCTCCC
AAGTAGTATACTGGTatgttttttcacaatttagcgTTCAGACTCGCCTC
TGTAAAagatataaaatttgaaattgcaagatttaaaaaataattactag
gttttttgataataaataataattataaCTCGTGTAAatcttctttttaa
taaaataattcaTTTACAGCCGGAGAATGTAtcaaaaaagtagaaaaata
cGTAGAAAAACGCTATAAAATTTTAGTATATCGTAATATATAGCCTTAGG
TTTTGACGAAAGTGTTTTAATTAAGATATCGTTTTTAGTGTTTAGGATAG
TAGGTGTTTAGTAATTTACTTTTGTGAATGCAGTCAGAAGCGACCCCCAA
GTTcgtctttcgatagctatctaacCGAAAGTAGGGGAGGTCACCCCTCC
TTCTTTCTGGATTGCTCCAATCACCCTGGATCCTTCTCTTTAACTGTTGT
GTTGGGCAATAAGCATCAAGAACCATTTTAGAGTCCTATGTAATCTTTTT
TGGCTGATTATCCAGggtaagaaataaataaatatgtGTGACCAAAAACT
GTAATGCTGACGCACAAACTACTGGCAAAATGGTCTCttcaagaaagatt
ttttcacaaCGCAAGGGACAGGCTTTTTGAatagacatttttatttttat
aacccGGCTGCTAAGGCACAAGGCTAAAGTTAAGTAAAAGAATTTTAGAA
AATCTAATcatggcaaacgatagcccttgacctCATAATATCAGGGGTTG
TCttaaaagcaaatttttcagagaATGAGTTATAATGCTAAACAACCCAA
GCTATGACCTGA
Run BLAST on NCBI

transcript from alignment at scaffold_435:129479..130340

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065312 ID=TCONS_00065312|Name=TCONS_00065312|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at scaffold_435:129479..130340 (Clytia hemisphaerica)
TCAGGTCATAGCTTGGGTTGTTTAGCATTATAACTCATtctctgaaaaat
ttgcttttaaGACAACCCCTGATATTATGaggtcaagggctatcgtttgc
catgATTAGATTTTCTAAAATTCTTTTACTTAACTTTAGCCTTGTGCCTT
AGCAGCCgggttataaaaataaaaatgtctatTCAAAAAGCCTGTCCCTT
GCGttgtgaaaaaatctttcttgaaGAGACCATTTTGCCAGTAGTTTGTG
CGTCAGCATTACAGTTTTTGGTCACacatatttatttatttcttaccCTG
GATAATCAGCCAAAAAAGATTACATAGGACTCTAAAATGGTTCTTGATGC
TTATTGCCCAACACAACAGTTAAAGAGAAGGATCCAGGGTGATTGGAGCA
ATCCAGAAAGAAGGAGGGGTGACCTCCCCTACTTTCGgttagatagctat
cgaaagacgAACTTGGGGGTCGCTTCTGACTGCATTCACAAAAGTAAATT
ACTAAACACCTACTATCCTAAACACTAAAAACGATATCTTAATTAAAACA
CTTTCGTCAAAACCTAAGGCTATATATTACGATATACTAAAATTTTATAG
CGTTTTTCTACgtatttttctacttttttgaTACATTCTCCGGCTGTAAA
tgaattattttattaaaaagaagatTTACACGAGttataattattattta
ttatcaaaaaacctagtaattattttttaaatcttgcaatttcaaatttt
atatctTTTACAGAGGCGAGTCTGAAcgctaaattgtgaaaaaacatACC
AGTATACTACTTGGGAGACctgatagaaaaaaattgttttcataaatttt
gagaAGAGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040949XLOC_040949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065312-exon-scaffold_435-1491911889:129479..130340TCONS_00065312-exon-scaffold_435-1491911889:129479..130340Clytia hemisphaericaexon
TCONS_00065312-exon-scaffold_435-1510915933:129479..130340TCONS_00065312-exon-scaffold_435-1510915933:129479..130340Clytia hemisphaericaexon
TCONS_00065312-exon-scaffold_435-1575043694:129479..130340TCONS_00065312-exon-scaffold_435-1575043694:129479..130340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:129479..130340 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.325982	0.476826	0.123031	0.361101	3.29704	3.47382	3.21311	3.66201	2.83856	2.83549	3.19255	2.56905	5.45615	5.55369	3.17761	2.18509	3.79306	3.67875	5.77544	6.46663	4.41249	5.68812	2.24259	1.86894	1.8083	2.91536	2.97991	2.86222	8.56295	8.10991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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