TCONS_00065305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065305
Unique NameTCONS_00065305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065305 ID=TCONS_00065305|Name=TCONS_00065305|organism=Clytia hemisphaerica|type=transcript|length=414bp
caatgcgatttttgaattttcagattcaggaatagttggcctagcagaaa
atgtataatatgCCATCGTTTTGTTggctacatcaggcagaaatctatat
tttgtaaatggcaaatatgaaaattttactatggtcagagcctttAATGA
CTGTTTATGGCCCACTTTTATTTATTAACATTTAGTTGTTTTTGATTAGT
TGTGTTGTTATTGTTAATATTTGAATTTTAGCAGTCAATTCTTTGTAATT
CTAATTTATCTGAACTAGTACATCTATCTCTTCAGAGGTTtgccccttga
aaatcgaatttgagAGAGAGACAGTTGAATCGGAGAAAGATTGGAAATTA
TTGTTAACAAATTAAgttcaacaaaaaatgtttgattttgaatctttttt
atcAGAAAGGTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_435:34487..34900

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065305 ID=TCONS_00065305|Name=TCONS_00065305|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at scaffold_435:34487..34900 (Clytia hemisphaerica)
TTCACCTTTCTgataaaaaagattcaaaatcaaacattttttgttgaacT
TAATTTGTTAACAATAATTTCCAATCTTTCTCCGATTCAACTGTCTCTCT
ctcaaattcgattttcaaggggcaAACCTCTGAAGAGATAGATGTACTAG
TTCAGATAAATTAGAATTACAAAGAATTGACTGCTAAAATTCAAATATTA
ACAATAACAACACAACTAATCAAAAACAACTAAATGTTAATAAATAAAAG
TGGGCCATAAACAGTCATTaaaggctctgaccatagtaaaattttcatat
ttgccatttacaaaatatagatttctgcctgatgtagccAACAAAACGAT
GGcatattatacattttctgctaggccaactattcctgaatctgaaaatt
caaaaatcgcattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040942XLOC_040942Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065305-exon-scaffold_435-1491911889:34487..34900TCONS_00065305-exon-scaffold_435-1491911889:34487..34900Clytia hemisphaericaexon
TCONS_00065305-exon-scaffold_435-1510915933:34487..34900TCONS_00065305-exon-scaffold_435-1510915933:34487..34900Clytia hemisphaericaexon
TCONS_00065305-exon-scaffold_435-1575043694:34487..34900TCONS_00065305-exon-scaffold_435-1575043694:34487..34900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:34487..34900 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.19595	0.575119	0	0.184423	0.222499	0.833202	0	0	0	0	0	0.119531	0	0.316378	0	0.133161	0	0	2.34257	1.46909	1.38901	3.78843	0.557428	1.49247	0.474605	0	0.384171	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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