TCONS_00065302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065302
Unique NameTCONS_00065302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065302 ID=TCONS_00065302|Name=TCONS_00065302|organism=Clytia hemisphaerica|type=transcript|length=629bp
AAGGGCTTCAGCTTTATCATGAAATGTCTCTTGACCACTTTTGCGCTTGC
ATGGAACTCCATTATTGTTAATATATTTGATAAAGTCTCCTTCAACATAG
GGCTCAACAGTGATTGGCTCACCATTAAGAAGAGCAAATTGGATAGTTTG
ATACTGAAACCAATTTTCCCTTAAGCCTGGCTTTTTCATACACTTTGCTG
TTATTGCTTTCGCTGCAGTGTGCATTTGTACCTGCTTTCTTGTGTTTTCT
TCAAGGGTCATATTATACCGTGGGCCGCATACGTTCCAAGCTGACTCTTT
GAACTTTTTTATGACCCAAATTTTTGTGGTTCCATTTTCAGTTGTGTATG
CTTTGAAGGCATTTCTAAAACCTCCCTCTGCAAATTTTTCTGTTTGCATG
CGAAATTTGCTAGTTTCACCTTTTAGCCAAATTTTATGTTTGATGTTGAA
TGACTCTAGTGTCAAAGTTACCTCATTATCCAATGTTGGAGTAACTAATT
TTCCTGCTTGTAAAATGCCTCCAATAGAAATTGATACTGGCATATCTTCT
TGCAAATGTGGTTTCTTTGGGAGCAGAATCGATGAAACCCTTTTCCTCTT
GCTTTTCACAGGAATAGAATTGTTGCTAT
Run BLAST on NCBI

protein sequence of TCONS_00065302-protein

>TCONS_00065302-protein ID=TCONS_00065302-protein|Name=TCONS_00065302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
SNNSIPVKSKRKRVSSILLPKKPHLQEDMPVSISIGGILQAGKLVTPTLD
NEVTLTLESFNIKHKIWLKGETSKFRMQTEKFAEGGFRNAFKAYTTENGT
TKIWVIKKFKESAWNVCGPRYNMTLEENTRKQVQMHTAAKAITAKCMKKP
GLRENWFQYQTIQFALLNGEPITVEPYVEGDFIKYINNNGVPCKRKSGQE
TFHDKAEAL
Run BLAST on NCBI

transcript from alignment at scaffold_435:17712..18340

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065302 ID=TCONS_00065302|Name=TCONS_00065302|organism=Clytia hemisphaerica|type=transcript|length=629bp|location=Sequence derived from alignment at scaffold_435:17712..18340 (Clytia hemisphaerica)
ATAGCAACAATTCTATTCCTGTGAAAAGCAAGAGGAAAAGGGTTTCATCG
ATTCTGCTCCCAAAGAAACCACATTTGCAAGAAGATATGCCAGTATCAAT
TTCTATTGGAGGCATTTTACAAGCAGGAAAATTAGTTACTCCAACATTGG
ATAATGAGGTAACTTTGACACTAGAGTCATTCAACATCAAACATAAAATT
TGGCTAAAAGGTGAAACTAGCAAATTTCGCATGCAAACAGAAAAATTTGC
AGAGGGAGGTTTTAGAAATGCCTTCAAAGCATACACAACTGAAAATGGAA
CCACAAAAATTTGGGTCATAAAAAAGTTCAAAGAGTCAGCTTGGAACGTA
TGCGGCCCACGGTATAATATGACCCTTGAAGAAAACACAAGAAAGCAGGT
ACAAATGCACACTGCAGCGAAAGCAATAACAGCAAAGTGTATGAAAAAGC
CAGGCTTAAGGGAAAATTGGTTTCAGTATCAAACTATCCAATTTGCTCTT
CTTAATGGTGAGCCAATCACTGTTGAGCCCTATGTTGAAGGAGACTTTAT
CAAATATATTAACAATAATGGAGTTCCATGCAAGCGCAAAAGTGGTCAAG
AGACATTTCATGATAAAGCTGAAGCCCTT

Coding sequence (CDS) from alignment at scaffold_435:17712..18340

>TCONS_00065302 ID=TCONS_00065302|Name=TCONS_00065302|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_435:17712..18340 (Clytia hemisphaerica)
AGCAACAATTCTATTCCTGTGAAAAGCAAGAGGAAAAGGGTTTCATCGAT
TCTGCTCCCAAAGAAACCACATTTGCAAGAAGATATGCCAGTATCAATTT
CTATTGGAGGCATTTTACAAGCAGGAAAATTAGTTACTCCAACATTGGAT
AATGAGGTAACTTTGACACTAGAGTCATTCAACATCAAACATAAAATTTG
GCTAAAAGGTGAAACTAGCAAATTTCGCATGCAAACAGAAAAATTTGCAG
AGGGAGGTTTTAGAAATGCCTTCAAAGCATACACAACTGAAAATGGAACC
ACAAAAATTTGGGTCATAAAAAAGTTCAAAGAGTCAGCTTGGAACGTATG
CGGCCCACGGTATAATATGACCCTTGAAGAAAACACAAGAAAGCAGGTAC
AAATGCACACTGCAGCGAAAGCAATAACAGCAAAGTGTATGAAAAAGCCA
GGCTTAAGGGAAAATTGGTTTCAGTATCAAACTATCCAATTTGCTCTTCT
TAATGGTGAGCCAATCACTGTTGAGCCCTATGTTGAAGGAGACTTTATCA
AATATATTAACAATAATGGAGTTCCATGCAAGCGCAAAAGTGGTCAAGAG
ACATTTCATGATAAAGCTGAAGCCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040939XLOC_040939Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065302-exon-scaffold_435-1491911889:17712..18340TCONS_00065302-exon-scaffold_435-1491911889:17712..18340Clytia hemisphaericaexon
TCONS_00065302-exon-scaffold_435-1510915933:17712..18340TCONS_00065302-exon-scaffold_435-1510915933:17712..18340Clytia hemisphaericaexon
TCONS_00065302-exon-scaffold_435-1575043694:17712..18340TCONS_00065302-exon-scaffold_435-1575043694:17712..18340Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065302-proteinTCONS_00065302-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:17712..18340 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0185282	0.407148	0.255352	0	1.20856	0.859276	1.77288	1.88602	0.638724	1.68257	0.459863	0.399141	0.218513	0.18224	0.269992	0.446793	0	0.189101	0	0.0939633	0.79507	0.608477	0.293189	0.197864	0.406982	0.0975887	0.619524	0.334036	0.110977	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004166MHCK_EF2_kinase
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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