|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065282 ID=TCONS_00065282|Name=TCONS_00065282|organism=Clytia hemisphaerica|type=transcript|length=1557bp
agGGAATAAGATATTAAAATGAATTTGCTAACGACTGCAATTCTTTTGGA
GACTTTATTTACAATTATTTTCGTTGGGGCCATCTTTGTATTTGGAGTTT
GCTGTTACATTTTGTCGTATTTCATCTCATGGTTGTACATTGTTGGATTC
CTCTCCCTTCTTTATTGGTTTTTGGTCACCGAGAGAACTCCTTCACCACA
AGAAATTCGAAAGCGTAAAGATACTTTTGTTGTCATCGTTGGTGCTGGCT
ATTCCGGATTATGTGCGGCTATCCGGTTGAAAAAAGAACGTATCCGCTTT
GTTTTGATCGAGAAATCGGAAACACTTGGCGGAACATGGTGGGATAACAA
ATATCCAGGGTGTGCTTGTGACATCCCCTCGCATTTTTATAGTTTATCCT
TTAAACTGAACGCGTTTTGGACAAAGATGTATTCTTCAGGAGATGAAATT
CAGGAATATTTAGAAGATACAGCTGATTATTACGGCATCCGAGAGCACGT
CAAATTCGGTTGCAAAGTTGAGACATGTGAATTCAACAAAGAGACACAAA
AATGGTCAGTCAAAACTTCAACAGGCCAGGAATTCGAATGCAATTATCTC
ATCTCTGGAATGGGAGCTTTACATGTCCCTAAATTTCCCAGTTTGAAAGG
GATGGAAGAATTTCAAGGAGAGCACTTTCACACTGCTCAATGGAAAGACG
ATTTTGATTGGTCAGGAAAACGCGTAGGAATTATCGGTACTGGGAGCTCT
TCAATTCAAGCCGTACCGAAACTCGCCGAACGTTGTAAAGAGCTTTACGT
CTTCCAAAGAACACCAGCTTGGATTTTCCCTCTCTTGAATTTGCGTTATC
CAGCTatcattcaaaaactttttcaagcTTTCCCATTTGTTATGAAGCTT
CATCGGTNGTTATCCCGCTatcattcaaaaactttttcaagcTTTCCCGT
TTGTTATGAAGCTTCATCggttatattttttcttcagatcCGAATTTGTA
TTCGCCGCTTTCTTCGGGAAAGTATCGTTAGCCCGAGAGATTATCTCTAA
TCTGACCAACCAACTCATGTCGAATGAAGTTGCCGATCCCAAATTGGCTG
AGAAACTTATTCCTAAGTACTCAATGTTTAGTAAAAGAATCACCATCTCG
AACGattatttgaaaacttttaatcgACCAAACGTTCATCTCATCACTGA
ACCGATTCAAGAAATTACCCATGATTCTATTCTCCTTAAAAATAACCAAG
ATGCATCAGCGAAAGAAGTAGAATTAGATGCGATCATTTATGCGACAGGA
TTTGACGTTTTGCAAAGTTCGACAAATATGGATATCAAAAACCCAAATAG
CGGAAAGTCTTTATCAACAATTTGGGGAGAAACACCGAATGCTTACATGG
GGATTATGCCAGCCGGAATACCGAACTTTTTCATGCTCTTCGGACCCGGA
ACTGTGCTAGgGCACAGCAGTGCGATCTTTATGACGGAATGTCAAATAGA
TTTTATGATGAAGACGATTACTCGATCCATTGATAACAATTGTGCTTCTG
TCGAAGT Run BLAST on NCBI protein sequence of TCONS_00065282-protein >TCONS_00065282-protein ID=TCONS_00065282-protein|Name=TCONS_00065282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MNLLTTAILLETLFTIIFVGAIFVFGVCCYILSYFISWLYIVGFLSLLYW
FLVTERTPSPQEIRKRKDTFVVIVGAGYSGLCAAIRLKKERIRFVLIEKS
ETLGGTWWDNKYPGCACDIPSHFYSLSFKLNAFWTKMYSSGDEIQEYLED
TADYYGIREHVKFGCKVETCEFNKETQKWSVKTSTGQEFECNYLISGMGA
LHVPKFPSLKGMEEFQGEHFHTAQWKDDFDWSGKRVGIIGTGSSSIQAVP
KLAERCKELYVFQRTPAWIFPLLNLRYPAIIQKLFQAFPFVMKLHRXLSR
YHSKTFSSFPVCYEASSVIFFLQIRICIRRFLRESIVSPRDYL Run BLAST on NCBI transcript from alignment at scaffold_435:251622..253453- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065282 ID=TCONS_00065282|Name=TCONS_00065282|organism=Clytia hemisphaerica|type=transcript|length=1832bp|location=Sequence derived from alignment at scaffold_435:251622..253453- (Clytia hemisphaerica)
AGGGAATAAGATATTAAAATGAATTTGCTAACGACTGCAATTCTTTTGGA
GACTTTATTTACAATTATTTTCGTTGGGGCCATCTTTGTATTTGGAGTTT
GCTGTTACATTTTGTCGTATTTCATCTCATGGTTGTACATTGTTGGATTC
CTCTCCCTTCTTTATTGGTTTTTGGTCACCGAGAGAACTCCTTCACCACA
AGAAATTCGAAAGCGTAAAGATACTTTTGTTGTCATCGTTGGTGCTGGCT
ATTCCGGATTATGTGCGGCTATCCGGTTGAAAAAAGAACGTATCCGCTTT
GTTTTGATCGAGAAATCGGAAACACTTGGCGGAACATGGTGGGATAACAA
ATATCCAGGGTGTGCTTGTGACATCCCCTCGCATTTTTATAGTTTATCCT
TTAAACTGAACGCGTTTTGGACAAAGATGTATTCTTCAGGAGATGAAATT
CAGGAATATTTAGAAGATACAGCTGATTATTACGGCATCCGAGAGCACGT
CAAATTCGGTTGCAAAGTTGAGACATGTGAATTCAACAAAGAGACACAAA
AATGGTCAGTCAAAACTTCAACAGGCCAGGAATTCGAATGCAATTATCTC
ATCTCTGGAATGGGAGCTTTACATGTCCCTAAATTTCCCAGTTTGAAAGG
GATGGAAGAATTTCAAGGAGAGCACTTTCACACTGCTCAATGGAAAGACG
ATTTTGATTGGTCAGGAAAACGCGTAGGAATTATCGGTACTGGGAGCTCT
TCAATTCAAGCCGTACCGAAACTCGCCGAACGTTGTAAAGAGCTTTACGT
CTTCCAAAGAACACCAGCTTGGATTTTCCCTCTCTTGAATTTGCGTTATC
CAGCTATCATTCAAAAACTTTTTCAAGCTTTCCCATTTGTTATGAAGCTT
CATCGGTNGTTATCCCGCTATCATTCAAAAACTTTTTCAAGCTTTCCCGT
TTGTTATGAAGCTTCATCGGTTATATTTTTTCTTCAGATCCGAATTTGTA
TTCGCCGCTTTCTTCGGGAAAGTATCGTTAGCCCGAGAGATTATCTCTAA
TCTGACCAACCAACTCATGTCGAATGAAGTTGCCGATCCCAAATTGGCTG
AGAAACTTATTCCTAAGTACTCAATGTTTAGTAAAAGAATCACCATCTCG
AACGATTATTTGAAAACTTTTAATCGACCAAACGTTCATCTCATCACTGA
ACCGATTCAAGAAATTACCCATGATTCTATTCTCCTTAAAAATAACCAAG
ATGCATCAGCGAAAGAAGTAGAATTAGATGCGATCATTTATGCGACAGGA
TTTGACGTTTTGCAAAGTTCGACAAATATGGATATCAAAAACCCAAATAG
CGGAAAGTCTTTATCAACAATTTGGGGAGAAACACCGAATGCTTACATGG
GGATTATGCCAGCCGGAATACCGAACTTTTTCATGCTCTTCGGACCCGGA
ACTGTGCTAGGTAAGATTTGTTTTGATGGCTGGTGAGCAGCTTCAGGGTT
AGACTCTCACAAATTACACAAGCAAATAAATTTCATGAATAAGCATGTGC
TCGGGTTTGATTTTTATGTGTGATGAGTGTGTGTTTTTCATGTGCATGGT
AGAGGAAGCTTTAATGAATCCATGCGATATTCATTTGCCACTACCGGCAG
AAATCACATCATCATGAATAGTATGAACTCCTTAATTTCTTCATGATTTC
TTTTCAAATCTATTTCACTTTCTTTTTTTATTCAGGGCACAGCAGTGCGA
TCTTTATGACGGAATGTCAAATAGATTTTATGATGAAGACGATTACTCGA
TCCATTGATAACAATTGTGCTTCTGTCGAAGT Coding sequence (CDS) from alignment at scaffold_435:251622..253453- >TCONS_00065282 ID=TCONS_00065282|Name=TCONS_00065282|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_435:251622..253453- (Clytia hemisphaerica)
ATGAATTTGCTAACGACTGCAATTCTTTTGGAGACTTTATTTACAATTAT
TTTCGTTGGGGCCATCTTTGTATTTGGAGTTTGCTGTTACATTTTGTCGT
ATTTCATCTCATGGTTGTACATTGTTGGATTCCTCTCCCTTCTTTATTGG
TTTTTGGTCACCGAGAGAACTCCTTCACCACAAGAAATTCGAAAGCGTAA
AGATACTTTTGTTGTCATCGTTGGTGCTGGCTATTCCGGATTATGTGCGG
CTATCCGGTTGAAAAAAGAACGTATCCGCTTTGTTTTGATCGAGAAATCG
GAAACACTTGGCGGAACATGGTGGGATAACAAATATCCAGGGTGTGCTTG
TGACATCCCCTCGCATTTTTATAGTTTATCCTTTAAACTGAACGCGTTTT
GGACAAAGATGTATTCTTCAGGAGATGAAATTCAGGAATATTTAGAAGAT
ACAGCTGATTATTACGGCATCCGAGAGCACGTCAAATTCGGTTGCAAAGT
TGAGACATGTGAATTCAACAAAGAGACACAAAAATGGTCAGTCAAAACTT
CAACAGGCCAGGAATTCGAATGCAATTATCTCATCTCTGGAATGGGAGCT
TTACATGTCCCTAAATTTCCCAGTTTGAAAGGGATGGAAGAATTTCAAGG
AGAGCACTTTCACACTGCTCAATGGAAAGACGATTTTGATTGGTCAGGAA
AACGCGTAGGAATTATCGGTACTGGGAGCTCTTCAATTCAAGCCGTACCG
AAACTCGCCGAACGTTGTAAAGAGCTTTACGTCTTCCAAAGAACACCAGC
TTGGATTTTCCCTCTCTTGAATTTGCGTTATCCAGCTATCATTCAAAAAC
TTTTTCAAGCTTTCCCATTTGTTATGAAGCTTCATCGGTNGTTATCCCGC
TATCATTCAAAAACTTTTTCAAGCTTTCCCGTTTGTTATGAAGCTTCATC
GGTTATATTTTTTCTTCAGATCCGAATTTGTATTCGCCGCTTTCTTCGGG
AAAGTATCGTTAGCCCGAGAGATTATCTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065282-exon-scaffold_435-1575043694:251994..253453 | TCONS_00065282-exon-scaffold_435-1575043694:251994..253453 | Clytia hemisphaerica | exon |
| TCONS_00065282-exon-scaffold_435-1575043694:251622..251718 | TCONS_00065282-exon-scaffold_435-1575043694:251622..251718 | Clytia hemisphaerica | exon |
| TCONS_00065282-exon-scaffold_435-1510915933:251994..253453 | TCONS_00065282-exon-scaffold_435-1510915933:251994..253453 | Clytia hemisphaerica | exon |
| TCONS_00065282-exon-scaffold_435-1510915933:251622..251718 | TCONS_00065282-exon-scaffold_435-1510915933:251622..251718 | Clytia hemisphaerica | exon |
| TCONS_00065282-exon-scaffold_435-1491911889:251994..253453 | TCONS_00065282-exon-scaffold_435-1491911889:251994..253453 | Clytia hemisphaerica | exon |
| TCONS_00065282-exon-scaffold_435-1491911889:251622..251718 | TCONS_00065282-exon-scaffold_435-1491911889:251622..251718 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:251622..253453 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000103 | Pyridine_nuc-diS_OxRdtase_2 |
| IPR023753 | FAD/NAD-binding_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
|
