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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065275 ID=TCONS_00065275|Name=TCONS_00065275|organism=Clytia hemisphaerica|type=transcript|length=2775bp
GCAAATAGTTGCACCACTATTTAGACGGTATATATTTAAGAATGTTTCTC
GCTGAACAACAGGCATACAACACAAGAATCAAGGGAGGGATCAACGAAGT
AGAGAAATACTCTACACAATCCAACCGAGGAAAACTTACTTTTTATTTAT
ATGCAATATTTTGGCATACCAAACAACGTTGAATCATGGTGTTGAAGAAA
AGTAAATCAGAAGCAATCAACTCTGGAAATACCATCCGTAAAGGTCGAAG
TAAGACTCATATTCGAGCATTTGAAATCCAAGCATCAAAGCACAATTTCT
TAAAGTATGCAGataaacatgaaaaagaattaTACCGAATTTTATCACAG
CCTCAAATCGAGTTCTCTTTGAACAAATAAAACCGATGGTCTCTGTACGA
GAAATTAGAGCAAATCGAGGAGCTTCAGAAAACCTAcggagaagaaaaag
aaaaacagaaaagcCGTCGACAACTGAAAAAGGAAAACCGTAAAAACAAG
AGGTCAAAGAAACGCAGAAATGAAGATGAATCGGAGCAAGCTGAAATCGT
TTATACGAAGTCTGATGAACAGAATGTTACCGTTTGCTCTGAAAATAAAG
TCAATTTCAAATCAGTGCACCGAACGCTAACCAAACTTCATGATGCATAC
CACACAAAACACAGGTCACAAAAAGTCAACGTCAGAAAACCAAAGATTTA
TTACGATGACGATTTGGCGACGGATTATCTGTCGTACGACTATGACGAGG
ATGACGACTATGACGACTATGACGAGGATGACGGCGAATTCTATTGGGAA
CAAAATGAAGATGGAGACGTGATTGGACACCAAacttcactttcattttc
tgattatttCAACACGTCCCATGAAACCAAAAAAGCGGTCTTCGTCGAAG
AATCAATCGGAAAATCTGTTCATGGAGAAATCAAACCAGCTATGCAACTA
CCATACACTTCTTCAGGACTGGTTGGCAATACACGAAAAGTTGAATTACC
AATTCAACTTCAAGTCAAATCCTCAAGTATCGCACCTGAAATACTCCGAC
AAAAACATGGTAAGAAGTATCACGAAAGTGCTTCAATCCCAAGGAAATTC
CTTATCATTGAAAATACATCTTATAGGAAAGCAAAAGTTGTAATAGTAAC
TGTCCAATCAGAATCTAAAGGCGTGGCATCAGTTTTGATCGATAAGCAGC
AAAGTCACGGAAATAAGGATCTCAATATTCCCTACAATGATGGCTGCATA
AACTTTGATGAGTTAATTCAACCAGTCTTTGACTTGCAGAGCAACTTTAC
CAACAGCTCACACAGCATTGTTTCTCCTTATACTGTACTGAAGCCGTTCA
CCCTTCATTGTGTCTTCACTGAACAAATCAGGAATCCTACAATGTTAGAT
ACCTGTTTCGTAGACGACAATCTTTGTCAGAACTGCTTCCAAACGAAAGA
TTCATTTACTACACTTATGGGTTGTGGGCATACCTTTTGTGATGACTGTT
GGCAAGATTTCATTTCGATGATGGTGTCAGCTCAGAGAGTCAACATCCCT
TGCATGCAATATAAATGCAATACAAGAATCGATCCTGTAACCGTCGTAAG
CTTCCTGAAGAACGACAAATCCTGGCTATCGTTTAAAAGTGGTTCCCTGA
ACTCGATAACATCATGCCCAAAAAAACACTGCGTTGGCGTAACCTCTGAT
AAAGTAAATCCGCCAAGAACCAGTGAAATTACGGATAGATTTGATGCAAA
GCAGCCAGAAATGTTTTGTGAAGTTTGCGGAAGCAAGTTTTGTGTGTATT
GCCGAGAAGGACACTGGCCTTTGACGTGCGAAATGCATCAAGCATACCAA
GAATACAAATCTGGCGAGGAGCAACCTTCGTATGAAGATTTATTGAGAGA
TTCGCAATATTTGAAATTACATTTGAGAAGCTGTCCAAACTGCCACGTCG
TCATCGAGAAAAATGGAGGGTGTAACCATATGTATTGCACTCAATGCTAC
AGACCATTTAATTGGGACAAACCACAAACCAAAGAGTTTGGTACTTGGCG
ATTCTTCCAAACAAAGCATAATGATCGATTACGTAATGCTTTACTGGTGG
GTACCGTGATCAAGAATGACGCAATGGAGAAGCTAAAACAACATGGATAC
ACAAACGAAGTCAAAACTAAGTTGCATACAGAGCTGTACGAGGCTATCAA
GGCTTTGAGCAAGATTGTAGAATCAGCATATGTTGTCAGCGGTTTGAGCG
ACTCGGTTTACCAGCGACGTCGGTATCTCAATCTAGCCGATCGTTTGAAA
TGGTGGGTCAGCAAAGGACTTGATTTACTTTCCAGAAAAAAGAATGAATA
CGATGCTCAAGATATCAAATATGcaacaagaaaaatgaaagaactgaTTG
ACCAAGTTGTCAAAGGTGATTTTATAATCCAAGAATGTCCACTACCAGCA
GGTGATCATGCTCGACTCTGGAAAAACATCTTGATGAAttgagaattgaa
aaaaaacttccttaaaaattgaaatcaatttaaaaAGACGATCATAATCA
TACAGTATAACaaacttttgtatttttaggGTATTAGGGTATTTCAGATT
TTTATAAAACTGTTAATCGAATAATTTCGTTAAATACCTTAAgggtatta
attttcgcggggattatatttcgcgaatttcgcgagtttttccgaaattc
gcaaaatataatcctcgcgaaaaaattaaaatcatgatttttgcctgaac
ccctaggaaaatgaaagaaattcgg Run BLAST on NCBI protein sequence of TCONS_00065275-protein >TCONS_00065275-protein ID=TCONS_00065275-protein|Name=TCONS_00065275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=516bp
MQLPYTSSGLVGNTRKVELPIQLQVKSSSIAPEILRQKHGKKYHESASIP
RKFLIIENTSYRKAKVVIVTVQSESKGVASVLIDKQQSHGNKDLNIPYND
GCINFDELIQPVFDLQSNFTNSSHSIVSPYTVLKPFTLHCVFTEQIRNPT
MLDTCFVDDNLCQNCFQTKDSFTTLMGCGHTFCDDCWQDFISMMVSAQRV
NIPCMQYKCNTRIDPVTVVSFLKNDKSWLSFKSGSLNSITSCPKKHCVGV
TSDKVNPPRTSEITDRFDAKQPEMFCEVCGSKFCVYCREGHWPLTCEMHQ
AYQEYKSGEEQPSYEDLLRDSQYLKLHLRSCPNCHVVIEKNGGCNHMYCT
QCYRPFNWDKPQTKEFGTWRFFQTKHNDRLRNALLVGTVIKNDAMEKLKQ
HGYTNEVKTKLHTELYEAIKALSKIVESAYVVSGLSDSVYQRRRYLNLAD
RLKWWVSKGLDLLSRKKNEYDAQDIKYATRKMKELIDQVVKGDFIIQECP
LPAGDHARLWKNILMN Run BLAST on NCBI transcript from alignment at scaffold_435:72457..75589- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065275 ID=TCONS_00065275|Name=TCONS_00065275|organism=Clytia hemisphaerica|type=transcript|length=3133bp|location=Sequence derived from alignment at scaffold_435:72457..75589- (Clytia hemisphaerica)
GCAAATAGTTGCACCACTATTTAGACGGTATATATTTAAGAATGTTTCTC
GCTGAACAACAGGCATACAACACAAGAATCAAGGGAGGGATCAACGAAGT
AGAGAAATACTCTACACAATCCAACCGAGGAAAACTTACTTTTTATTTAT
ATGCAATATTTTGGCATACCAAACAACGTTGAATCATGGTGTTGAAGAAA
AGTAAATCAGAAGCAATCAACTCTGGAAATACCATCCGTAAAGGTAGGTC
GATATTTTATATCTTCTTTGAATGTGACTTATATCTACTGGGAAAGAATT
GATAGCTAAATCACCAGTCAAAACCTAATTTGAATTGAAGCGTTTCAACC
TCTGTAAATATTACATTTGCCTTTCGTCTATTTTACAGGTCGAAGTAAGA
CTCATATTCGAGCATTTGAAATCCAAGCATCAAAGCACAATTTCTTAAAG
TATGCAGATAAACATGAAAAAGAATTATACCGAATTTTATCACAGCCTCA
AATCGAGTTCTCTTTGAACAAATAAAACCGATGGTCTCTGTACGAGAAAT
TAGAGCAAATCGAGGAGCTTCAGAAAACCTACGGAGAAGAAAAAGAAAAA
CAGAAAAGCCGTCGACAACTGAAAAAGGAAAACCGTAAAAACAAGAGGTC
AAAGAAACGCAGAAATGAAGATGAATCGGAGCAAGCTGAAATCGTTTATA
CGAAGTCTGATGAACAGAATGTTACCGTTTGCTCTGAAAATAAAGTCAAT
TTCAAGTGAGTATCTTTATTGTGACAACTTGTCATGCGCTTATTTCAGTC
AAGTGGCCAAATATAAGATTCCCAATAGATACATTGAGTCCGGGGGGGAT
TGAGTCAACCAAGTCAAATAATGTGGATCAATGAACAGGTGTCAGATATC
CAGGAACAGATCTGTTGATAACAGATCACATAAAAACAAAGTCTAATTCT
ATATTGTTAAAATTATAGATCAGTGCACCGAACGCTAACCAAACTTCATG
ATGCATACCACACAAAACACAGGTCACAAAAAGTCAACGTCAGAAAACCA
AAGATTTATTACGATGACGATTTGGCGACGGATTATCTGTCGTACGACTA
TGACGAGGATGACGACTATGACGACTATGACGAGGATGACGGCGAATTCT
ATTGGGAACAAAATGAAGATGGAGACGTGATTGGACACCAAACTTCACTT
TCATTTTCTGATTATTTCAACACGTCCCATGAAACCAAAAAAGCGGTCTT
CGTCGAAGAATCAATCGGAAAATCTGTTCATGGAGAAATCAAACCAGCTA
TGCAACTACCATACACTTCTTCAGGACTGGTTGGCAATACACGAAAAGTT
GAATTACCAATTCAACTTCAAGTCAAATCCTCAAGTATCGCACCTGAAAT
ACTCCGACAAAAACATGGTAAGAAGTATCACGAAAGTGCTTCAATCCCAA
GGAAATTCCTTATCATTGAAAATACATCTTATAGGAAAGCAAAAGTTGTA
ATAGTAACTGTCCAATCAGAATCTAAAGGCGTGGCATCAGTTTTGATCGA
TAAGCAGCAAAGTCACGGAAATAAGGATCTCAATATTCCCTACAATGATG
GCTGCATAAACTTTGATGAGTTAATTCAACCAGTCTTTGACTTGCAGAGC
AACTTTACCAACAGCTCACACAGCATTGTTTCTCCTTATACTGTACTGAA
GCCGTTCACCCTTCATTGTGTCTTCACTGAACAAATCAGGAATCCTACAA
TGTTAGATACCTGTTTCGTAGACGACAATCTTTGTCAGAACTGCTTCCAA
ACGAAAGATTCATTTACTACACTTATGGGTTGTGGGCATACCTTTTGTGA
TGACTGTTGGCAAGATTTCATTTCGATGATGGTGTCAGCTCAGAGAGTCA
ACATCCCTTGCATGCAATATAAATGCAATACAAGAATCGATCCTGTAACC
GTCGTAAGCTTCCTGAAGAACGACAAATCCTGGCTATCGTTTAAAAGTGG
TTCCCTGAACTCGATAACATCATGCCCAAAAAAACACTGCGTTGGCGTAA
CCTCTGATAAAGTAAATCCGCCAAGAACCAGTGAAATTACGGATAGATTT
GATGCAAAGCAGCCAGAAATGTTTTGTGAAGTTTGCGGAAGCAAGTTTTG
TGTGTATTGCCGAGAAGGACACTGGCCTTTGACGTGCGAAATGCATCAAG
CATACCAAGAATACAAATCTGGCGAGGAGCAACCTTCGTATGAAGATTTA
TTGAGAGATTCGCAATATTTGAAATTACATTTGAGAAGCTGTCCAAACTG
CCACGTCGTCATCGAGAAAAATGGAGGGTGTAACCATATGTATTGCACTC
AATGCTACAGACCATTTAATTGGGACAAACCACAAACCAAAGAGTTTGGT
ACTTGGCGATTCTTCCAAACAAAGCATAATGATCGATTACGTAATGCTTT
ACTGGTGGGTACCGTGATCAAGAATGACGCAATGGAGAAGCTAAAACAAC
ATGGATACACAAACGAAGTCAAAACTAAGTTGCATACAGAGCTGTACGAG
GCTATCAAGGCTTTGAGCAAGATTGTAGAATCAGCATATGTTGTCAGCGG
TTTGAGCGACTCGGTTTACCAGCGACGTCGGTATCTCAATCTAGCCGATC
GTTTGAAATGGTGGGTCAGCAAAGGACTTGATTTACTTTCCAGAAAAAAG
AATGAATACGATGCTCAAGATATCAAATATGCAACAAGAAAAATGAAAGA
ACTGATTGACCAAGTTGTCAAAGGTGATTTTATAATCCAAGAATGTCCAC
TACCAGCAGGTGATCATGCTCGACTCTGGAAAAACATCTTGATGAATTGA
GAATTGAAAAAAAACTTCCTTAAAAATTGAAATCAATTTAAAAAGACGAT
CATAATCATACAGTATAACAAACTTTTGTATTTTTAGGGTATTAGGGTAT
TTCAGATTTTTATAAAACTGTTAATCGAATAATTTCGTTAAATACCTTAA
GGGTATTAATTTTCGCGGGGATTATATTTCGCGAATTTCGCGAGTTTTTC
CGAAATTCGCAAAATATAATCCTCGCGAAAAAATTAAAATCATGATTTTT
GCCTGAACCCCTAGGAAAATGAAAGAAATTCGG Coding sequence (CDS) from alignment at scaffold_435:72457..75589- >TCONS_00065275 ID=TCONS_00065275|Name=TCONS_00065275|organism=Clytia hemisphaerica|type=CDS|length=1551bp|location=Sequence derived from alignment at scaffold_435:72457..75589- (Clytia hemisphaerica)
ATGCAACTACCATACACTTCTTCAGGACTGGTTGGCAATACACGAAAAGT
TGAATTACCAATTCAACTTCAAGTCAAATCCTCAAGTATCGCACCTGAAA
TACTCCGACAAAAACATGGTAAGAAGTATCACGAAAGTGCTTCAATCCCA
AGGAAATTCCTTATCATTGAAAATACATCTTATAGGAAAGCAAAAGTTGT
AATAGTAACTGTCCAATCAGAATCTAAAGGCGTGGCATCAGTTTTGATCG
ATAAGCAGCAAAGTCACGGAAATAAGGATCTCAATATTCCCTACAATGAT
GGCTGCATAAACTTTGATGAGTTAATTCAACCAGTCTTTGACTTGCAGAG
CAACTTTACCAACAGCTCACACAGCATTGTTTCTCCTTATACTGTACTGA
AGCCGTTCACCCTTCATTGTGTCTTCACTGAACAAATCAGGAATCCTACA
ATGTTAGATACCTGTTTCGTAGACGACAATCTTTGTCAGAACTGCTTCCA
AACGAAAGATTCATTTACTACACTTATGGGTTGTGGGCATACCTTTTGTG
ATGACTGTTGGCAAGATTTCATTTCGATGATGGTGTCAGCTCAGAGAGTC
AACATCCCTTGCATGCAATATAAATGCAATACAAGAATCGATCCTGTAAC
CGTCGTAAGCTTCCTGAAGAACGACAAATCCTGGCTATCGTTTAAAAGTG
GTTCCCTGAACTCGATAACATCATGCCCAAAAAAACACTGCGTTGGCGTA
ACCTCTGATAAAGTAAATCCGCCAAGAACCAGTGAAATTACGGATAGATT
TGATGCAAAGCAGCCAGAAATGTTTTGTGAAGTTTGCGGAAGCAAGTTTT
GTGTGTATTGCCGAGAAGGACACTGGCCTTTGACGTGCGAAATGCATCAA
GCATACCAAGAATACAAATCTGGCGAGGAGCAACCTTCGTATGAAGATTT
ATTGAGAGATTCGCAATATTTGAAATTACATTTGAGAAGCTGTCCAAACT
GCCACGTCGTCATCGAGAAAAATGGAGGGTGTAACCATATGTATTGCACT
CAATGCTACAGACCATTTAATTGGGACAAACCACAAACCAAAGAGTTTGG
TACTTGGCGATTCTTCCAAACAAAGCATAATGATCGATTACGTAATGCTT
TACTGGTGGGTACCGTGATCAAGAATGACGCAATGGAGAAGCTAAAACAA
CATGGATACACAAACGAAGTCAAAACTAAGTTGCATACAGAGCTGTACGA
GGCTATCAAGGCTTTGAGCAAGATTGTAGAATCAGCATATGTTGTCAGCG
GTTTGAGCGACTCGGTTTACCAGCGACGTCGGTATCTCAATCTAGCCGAT
CGTTTGAAATGGTGGGTCAGCAAAGGACTTGATTTACTTTCCAGAAAAAA
GAATGAATACGATGCTCAAGATATCAAATATGCAACAAGAAAAATGAAAG
AACTGATTGACCAAGTTGTCAAAGGTGATTTTATAATCCAAGAATGTCCA
CTACCAGCAGGTGATCATGCTCGACTCTGGAAAAACATCTTGATGAATTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00065275-exon-scaffold_435-1575043694:75347..75589 | TCONS_00065275-exon-scaffold_435-1575043694:75347..75589 | Clytia hemisphaerica | exon |
| TCONS_00065275-exon-scaffold_435-1575043694:74835..75201 | TCONS_00065275-exon-scaffold_435-1575043694:74835..75201 | Clytia hemisphaerica | exon |
| TCONS_00065275-exon-scaffold_435-1575043694:72457..74621 | TCONS_00065275-exon-scaffold_435-1575043694:72457..74621 | Clytia hemisphaerica | exon |
| TCONS_00065275-exon-scaffold_435-1510915933:75347..75589 | TCONS_00065275-exon-scaffold_435-1510915933:75347..75589 | Clytia hemisphaerica | exon |
| TCONS_00065275-exon-scaffold_435-1510915933:74835..75201 | TCONS_00065275-exon-scaffold_435-1510915933:74835..75201 | Clytia hemisphaerica | exon |
| TCONS_00065275-exon-scaffold_435-1510915933:72457..74621 | TCONS_00065275-exon-scaffold_435-1510915933:72457..74621 | Clytia hemisphaerica | exon |
| TCONS_00065275-exon-scaffold_435-1491911889:75347..75589 | TCONS_00065275-exon-scaffold_435-1491911889:75347..75589 | Clytia hemisphaerica | exon |
| TCONS_00065275-exon-scaffold_435-1491911889:74835..75201 | TCONS_00065275-exon-scaffold_435-1491911889:74835..75201 | Clytia hemisphaerica | exon |
| TCONS_00065275-exon-scaffold_435-1491911889:72457..74621 | TCONS_00065275-exon-scaffold_435-1491911889:72457..74621 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:72457..75589 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013083 | Znf_RING/FYVE/PHD |
Blast
The following BLAST results are available for this feature:
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