|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065273 ID=TCONS_00065273|Name=TCONS_00065273|organism=Clytia hemisphaerica|type=transcript|length=997bp
ATTTATTATCAAATACGAGGAATAAGtttcagattttattttcattttca
acggCTTTTGCGTGGTTCTGGTTTTGTGAAATTAAGAAAGTTATCAAATA
ATAGTAAGTTTTACAGGATGAGACTCATCTTTCTGTCGATTGccgcattt
ttaaattttgtgtttGGTCAAATCATGAGACTACCTCAATGTAACAAATA
CGGAGCCACTTTTAAAGTTTCCAAACGTAAACTCAAAGTTGAAGCTAAGT
TCGATGCTCAAAGGTTGAACActcatgaaaaaattaaatccaaaGAGATA
TGCAGTTCTCTTTGCATCGAGAATGACGATTGCCAATCAGCTTTTTATGG
ACGCTTAACCAAAAAATGCTTCCTGTATAACAAGAAGTTTGATCCAGATG
AGCTGGAAGAGTCAGATACAATGTTTTATCTGACAACTGCACAAAACGAC
GGAGATAACCATCACGGCCACGCATGCGCATCAAACAAATGCAACCCAAA
GGGCACAGAAAAATGCGAAGAAACTTGTGAACAACCAAATGGATGCAAAT
GTCATTGTTTGAAAGGATTTGAAGGGGATCTTTGTGAACAAGATAAAAGG
ATGCAAAACTGTTTAGCAGAATGTGGGAAGAATTGTACAAACGACAATAT
GGATAAGGGGAGCAACCAAAAATACAGTTGTATCCATGCTTGCAAGATGA
GGGAGATCGGATTAGACGAAGCAACATGAAAAGAGAATTGTCAACGAGAT
GGAGGATCAGGATGCAGTCCTATCATTCNAGAGAATTGTGAACGAGATGG
AGGATCAGGATGCAATCCTATCATTCTTGGCTATCAATTCAACTTATGTG
GCACCATTGGTAACTCAGATCCTTTTTGTACTCCTGATGGAGATCCACCG
ATCGAAGAATGTGAACTTGGTTGTGCAAGCTTTTTgtgacttttgattaa
aaaaatgacCCCCTAGAAACTCATCCTTATTTACCAGGAATTTTGCT Run BLAST on NCBI transcript from alignment at scaffold_435:32558..38887- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065273 ID=TCONS_00065273|Name=TCONS_00065273|organism=Clytia hemisphaerica|type=transcript|length=6330bp|location=Sequence derived from alignment at scaffold_435:32558..38887- (Clytia hemisphaerica)
ATTTATTATCAAATACGAGGAATAAGTTTCAGATTTTATTTTCATTTTCA
ACGGCTTTTGCGTGGTTCTGGTTTTGTGAAATTAAGAAAGTTATCAAATA
ATAGTAAGTTTTACAGGATGAGACTCATCTTTCTGTCGATTGCCGCATTT
TTAAATTTTGTGTTTGGTCAAATCATGAGACTACCTCAATGTAACAAATA
CGGAGCCACTTTTAAAGTTTCCAAACGTAAACTCAAAGTTGAAGCTAAGT
TCGATGCTCAAAGGTTGAACACTCATGAAAAAATTAAATCCAAAGAGATA
TGCAGTTCTCTTTGCATCGAGAATGACGATTGCCAATCAGCTTTTTATGG
ACGCTTAACCAAAAAATGCTTCCTGTATAACAAGAAGTTTGATCCAGATG
AGCTGGAAGAGTCAGATACAATGTTTTATCTGACAACTGCACAAAACGAC
GGAGATAACCATGTAAGGAATCATTCTTCTTTAGTTTATAACAACCAGTC
AACTTTGCTGAGATATCAGAAACTCAAAAACTATTACCAAATTTAAAAAT
TCCCTTTTTTTGAGTTGCTAAATTCCTCCAATATGCTCCAATTTATACGA
AAATTGCAAATTAGTCCATTCACTAACTTCTCCTTGAAATTTCTTCTCTT
AATGTAGTTTTTATTTTTTTGAATTTTAAGAATTATTTAGCTTCTGATGT
AAATCAGTTTCCCTTGAGTTTCCTGTAGATGGAACCTCAGTGAAATGCTG
GTAGAGGTCTTTTCAGAACCACGTGTCTGGACCTCCGAGATAATGACATT
CTTACTATAATACTGTAAATGATTGGTAATTTCAGCACGGCCACGCATGC
GCATCAAACAAATGTAATCCAAAGGGCACAGAAAAATGTGAAGAAACTTG
TGAACAACCCAATGGATACAAATGTTATTGTTTGAAAGGATTCGGTGGCG
ATTTTTGCGAAGAAAGTAAGTAAACACTTGTTTAAAAGTAAGTAATGCGT
GAAATAAGAACCAGTCAGAGTCGGAGGTGACCCGTTTTTAATAATGTCAC
CACTCTGTCACCTTGGCTTACCCAGCACACACCATTTATCCTTGAATGAA
TGGCTGAATAATTTTTGATGAATCCTTATTTCCTCCGATACTCAAAACAA
TCATCGTCCAGTCTAAATCTGGACGCATTAAACTTTCTTTAAAAACATTT
TATGATTGATCATTTAGTTGAAGCACATTCGCTTTAAGTCTGCGCTCTTT
TTAGTGACCAAATAGAAACCACACTGACGGGGATCTGTTCAACCAAATAG
AAACCACACTCACGGGAATTTGTTCAACCAAATAGAAACCACACTCACGG
GGATCCGTTCAACCAAATAGAAACCACACTCACGGGAATCTGTTCAACCA
AATAGAAACCACACTCACGGGAATCTGTTCAACCAAATAGAAACCACACT
CACGGGGATCTGTTCAACCAAATAGAAACCACATTCACGGGAATCTGTTT
AATTCAACTAACATAGTTTACATATGGTATGGTTGTAAAAAAGAGTGCGT
GGTTAGGACTTATTGAATATTACAGTAAAATTAATCTACAATCATGGTCA
AAATTTAATGAGAATTTAGCTTATTTCCTCGTTTTTCGAAATTTGGAGTT
CGGGCGGTAAAGTCGCTTTTGGGCTAATTGATAAATTTATTCGAGTATTT
CAATTTGGGTGGGGTTTACAGACTTCTGGGCCATATTTTGAGCCCTATTG
GACTTTTCTTGAACTTTTGGATCCTCTCATCCTAAGGTCCTAAGTCTTAA
ACCTAGCCTTAAAACTCAGAGTTAAAACTCTACCCTTCCAACCTAATTTA
GAGCGCTTGCAAATCGTTTGTGGGAATTTCCCTTTTTCTCAAATATTATG
ACCGTGATTGTAATTTTTGTTTCAGGATTATTATGCAATCGAACGATTAA
ACCAATTGGTTGTTTTGCTGATTCTCCATCTGATCGAGCAATGGCCATCT
TCATTGGAAATTATAGAGATGACATCGATTGGGATAATTATGAAGTTAAT
TTCGAAGAGTATGTAGATAGTCTCCCTTCAATTTGAATGAAATGTTAGAA
TTTAAACGCATTATTTTGATATTTTGTGTTAACTATCTTTCTTTTCTTTC
CTTACTGTACACTTGGGCCTGTCCAATTGATTTAGTTTGATTAGTGGATG
AAATTTTCCGTGTTTACCGTATTTAAGGTTAACTTTCAAGACAAAAATCT
TGCTGAAACTTCCAATCACAAAAATGTTTGCAATAATTAATGATATTCAT
GACGCAACGTTTTTTACGGCAACACCCCGGTTATTTCCAGTAGTGGCAAA
TTAGAGCTTAGCAGCAAATTAGAGCTAAAAATAAATTCGTCACTACTAGC
AAAAATTAGGGTGTTTCCTTCAAGAACATTACGTTCTGAAAAAAAACCAC
GAATAAAATTTACTGTCCGATTTGAGATAAGTCAGAGTAGCAGTTACAGC
GAAAGTTAGGTAAAAATACTGAGCAGTCTTTAAAAAAACAGCCACACAGC
TGCCCGAGTAAAATACTGCATAGTGTCTTAGATAGTCAAGACCCATATAT
TCATGATATTCACGAAGTAATGTTTTATAAGAAAACACACATAAAAACTC
GTTTTTTTTGCCACTAGTTTTGTTGTTTAAATTCAAAACTAGTGAAAAAC
GCCCTGTTGTTTTTGAAAGCTTCCGTATAAAACATTACGTCATGAATAAC
ATAAATAGATACATTTCTTTTTCCAGGATATTATGCAAATGCATAGGAGA
AACTGAATGAGTTGACACCGGTATCAAATTCCTTGGAATTCAATCTTATG
GAGAGTGTCGTGGAACAACGGATACAGGCTACGCACGACACGGTGCTAGT
ACGGCCTGCAAAACTGCTCAATTTACAGAATGTTTTGGAAAAGACATTTG
CACTGGTCCAGATGATACCAATTACGTTTACGAACTTCCATGAGAAATCA
TCGTTTCTTCACTCTGACACGATCGAAATCAATGATTAAACTATCAATTT
AATTATGATCGTAAAGTTAAATCCTCAAAAAACATTTACCCCTGTTTTAC
CCCCTCCAGGAAAATGTTCCAAAATTTAAAAGAATATCTTTACAATCGAC
CAGCATTGGCTTACTTGATCATCATTTGTCATTACTTTAAATTTTACACC
CTTGCTCGAACTTACCCCCTAATTTTTCAGTCTTTGAACTCCCCTTTCTA
AGAGACCTTTTCATAAATGCCTCGTATTGAAACAATCACCATGGTAATTA
TATCTCTTGAGACATTAAATGACTTTTTTATGAATAGAAAGTAGTTTTAT
TAAAATCCGCTGGAAGTCAATCACCATGGCAATAGCTTTAAAACGAGGCA
AGCGATGTTCGTAACGTAATTTATGAAAAGGTGTATTCAGCTCAAAAGTT
ATATTTCTTAAGGGCTCTGACCGTAGTCAAAAGATTTGTTCATTAGCACT
TTTAACAAAAAATTGCTTTTATAAGTTGTTTGGAAATTTATTCTATCAAG
AGTAATTAAGAATTTATTTACAAAAATGACGTTATGAACTTTAAAGACGT
TAATCAGGTTAATCAAATGTTATATTGTCTTTTACTAAAAATGCTTGCCA
AGTTTCAATGGGTAATCAACGTTTTTCTTTTGATATTGTCCGCAAAGAAA
TGAATTGTTTGAAATTTTTCGGAAAAACTTTGATGTATCAAAAATTATAA
CTGCTTTTCTACGAAAAATTGGGATGAAAAATTGGTCAAAAACCACTTTT
TCAAGATTTTGAGACAAAGAAGCTTTTACAAAAATTTTCCGAAAATCTTT
TTTTTAGTTTGCCTAAAGATACACCTTCTAACGCAAAAATATTTTCAAAA
TCTTTTTTATTTGCCGAAAATAAGGTCTTCAAAATTGAAATACTGTTCTT
CACAAAAGTCTTCATTTTCTTCATCATCAAATTTTTTCAATGCGATTTTT
GAATTTTCAGATTCAGGAATAGTTGGCCTAGCAGAAAATGTATAATATGC
CATCGTTTTGTTGGCTACATCAGGCAGAAATCTATATTTTGTAAATGGCA
AATATGAAAATTTTACTATGGTCAGAGCCTTTAATGACTGTTTATGGCCC
ACTTTTATTTATTAACATTTAGTTGTTTTTGATTAGTTGTGTTGTTATTG
TTAATATTTGAATTTTAGCAGTCAATTCTTTGTAATTCTAATTTATCTGA
ACTAGTACATCTATCTCTTCAGAGGTTTGCCCCTTGAAAATCGAATTTGA
GAGAGAGACAGTTGAATCGGAGAAAGATTGGAAATTATTGTTAACAAATT
AAGTTCAACAAAAAATGTTTGATTTTGAATCTTTTTTATCAGAAAGGTGA
AACGTTTAAAATCATATTTTCCCTGGTCAATGGTTACTTTGTGAAATATT
TGGGCTTCAAGTGCGAAAGGTAGAGAGAGTTAATGTACGAGAGATGAAAG
TAACGAAAGAAAAGTGAAAAAGTGTGATCAATTAATTGCTATGACAGCTT
GTGTTGGAAATTTAATCTTATTTTCGTCCCCCTAGCTTTTTGATAATTTT
TATTCGTAATATTTGTAGTTTTTTTAACTTTTGGAGATTCTACAATCTAA
ATATCTGGGTGTCTTTGAGAACAGCTTGACTTGATCTCGATTTCTTTGGA
AAGACGGCATGAAACTGATCGTTGTGGCGATCGCATTAATGAATTTTGTG
TTTGGTCAAATGATGAGACTACCTCAATGTAACAAATACGGAGCTACTTT
TAAACATAGAATGAAGGGTGATATCATAGTATAAGAAAGCCGCGGCTTTC
TTATACTATGGTGATATAAAACGATGGCAGGATTATATTCCACCAAAACA
TTGATTTTACTGAGAGATGTGTTACTCTATGTATAGAGAATCCAGAATGC
AAGTCAGCCTTATATATCTCAGGTCATGGCGAATGTCATTTATATTACAC
TACGTTTGAAGCAAACCAACTTGATGAATCACGACTTACTTTTTATTTAA
AACCTGACCATAAAAGTAAAGATAATCACATGGTAAACAGTGCCGTAGGA
AGCATTTTCATATTAGGGGGGGGGGGCAAAGTTTAGTGAGACCGCGAGGG
CCAACCGGTTTGGCCCGAGGGGGAAACTTTTGAAAATTGAGCTCTAGATT
GCTTAAAAATCCACTCAAAACATGCACATAAAAGACAATTATGACAAATT
AAAAAAGAAAAACTTTGCATTTTGCAAAATAACCATTCTTGAAAAAATTA
TTGGGGGGCATAGCCCCCCTTGCCTCCCCAGTTGCTACGGCACTATAAAT
ATCCTGCAATTGCATCCTATCTCAAAGTGGTGTTACGTCTCAATTGAAAT
CTTACCCTATAAGCTCTCTCTGGGTCATTGAGACAGGGGTGTTCATGGCC
TTCCAGATGACAATTTTTTGAATCTCAAGTCTAAATAAAATGTATTAATA
AGTTTTTACACCCTCCAGTCACTTTACCTACTCTTTTAATTTTCTAATCT
TCTTTCTCAGCACGGCCACGCATGCGCATCAAACAAATGCAACCCAAAGG
GCACAGAAAAATGCGAAGAAACTTGTGAACAACCAAATGGATGCAAATGT
CATTGTTTGAAAGGATTTGAAGGGGATCTTTGTGAACAAGGTAAGAAGTT
GATAAGCCTGATAAGACTTGCAAGTAGCTTGGAAACAGGCGAATGTCAAA
GAGATGTAAGTATATGTGCATGTGGGGTACGAAAATCTAACTTTCGAAAA
TTTCCATTATAACTAGATTCTGGATATTCTTAAAAATAAGTTCTTCTAAA
GTGAGACGATGGGAAAAAATCTTTCAACCAAGTCTCATTTCATAGCTGAT
CTTACTTCAGCGAATATATTTACAGATAAAAGGATGCAAAACTGTTTAGC
AGAATGTGGGAAGAATTGTACAAACGACAATATGGATAAGGGGAGCAACC
AAAAATACAGTTGTATCCATGCTTGCAAGATGAGGGAGATCGGATTAGAC
GAAGCAACATGAAAAGAGAATTGTCAACGAGATGGAGGATCAGGATGCAG
TCCTATCATTCNAGAGAATTGTGAACGAGATGGAGGATCAGGATGCAATC
CTATCATTCTTGGCTATCAATTCAACTTATGTGGCACCATTGGTAACTCA
GATCCTTTTTGTACTCCTGATGGAGATCCACCGATCGAAGAATGTGAACT
TGGTTGTGCAAGCTTTTTGTGACTTTTGATTAAAAAAATGACCCCCTAGA
AACTCATCCTTATTTACCAGGAATTTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065273-exon-scaffold_435-1575043694:38426..38887 | TCONS_00065273-exon-scaffold_435-1575043694:38426..38887 | Clytia hemisphaerica | exon |
| TCONS_00065273-exon-scaffold_435-1575043694:33198..33327 | TCONS_00065273-exon-scaffold_435-1575043694:33198..33327 | Clytia hemisphaerica | exon |
| TCONS_00065273-exon-scaffold_435-1575043694:32558..32962 | TCONS_00065273-exon-scaffold_435-1575043694:32558..32962 | Clytia hemisphaerica | exon |
| TCONS_00065273-exon-scaffold_435-1510915933:38426..38887 | TCONS_00065273-exon-scaffold_435-1510915933:38426..38887 | Clytia hemisphaerica | exon |
| TCONS_00065273-exon-scaffold_435-1510915933:33198..33327 | TCONS_00065273-exon-scaffold_435-1510915933:33198..33327 | Clytia hemisphaerica | exon |
| TCONS_00065273-exon-scaffold_435-1510915933:32558..32962 | TCONS_00065273-exon-scaffold_435-1510915933:32558..32962 | Clytia hemisphaerica | exon |
| TCONS_00065273-exon-scaffold_435-1491911889:38426..38887 | TCONS_00065273-exon-scaffold_435-1491911889:38426..38887 | Clytia hemisphaerica | exon |
| TCONS_00065273-exon-scaffold_435-1491911889:33198..33327 | TCONS_00065273-exon-scaffold_435-1491911889:33198..33327 | Clytia hemisphaerica | exon |
| TCONS_00065273-exon-scaffold_435-1491911889:32558..32962 | TCONS_00065273-exon-scaffold_435-1491911889:32558..32962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:32558..38887 - |
Blast
The following BLAST results are available for this feature:
|
