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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065261 ID=TCONS_00065261|Name=TCONS_00065261|organism=Clytia hemisphaerica|type=transcript|length=2081bpRun BLAST on NCBI transcript from alignment at scaffold_435:184840..193870+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065261 ID=TCONS_00065261|Name=TCONS_00065261|organism=Clytia hemisphaerica|type=transcript|length=9031bp|location=Sequence derived from alignment at scaffold_435:184840..193870+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065261 vs. Swiss-Prot (Human)
Match: MYO1D (Unconventional myosin-Id OS=Homo sapiens GN=MYO1D PE=1 SV=2) HSP 1 Score: 531.946 bits (1369), Expect = 1.893e-175 Identity = 278/488 (56.97%), Postives = 356/488 (72.95%), Query Frame = 3
Query: 3 AKAIYDRLFTWIVNKINSAIDPK-HSSQRHVGNKVIGVLDIYGFEIFDENSFEQLCINYCNEKLQQLFIELVLKQEQEEYRRENIEWTQIDYFNNKIICDLIDQQHKGIIAILDEACLNVGKVTDKMFLHAMDQKLGTHNHYKSRQTEPSNKDLTHNQDFQIQHYAGDVKYSAMNFLDKNKDNLFQDFKRLLYNSSHQMLKDQWPEGGQDITKVTKRPQTTATIFKNSMISLVDNLMKKIPYYVRCIKPNALKSPSKFDEDLIAHQVRYLGLIENVRVRRAGFAFRQIYSRFLQRYKITCPATWPVYD-KDLKDGCNLIIREFHFEGDVKFGNTKIFIKSPKTIFSLEEERTKKLPMIVLKMQKTWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHGDAKNQPRFGKNLPWPKIGVWPRALVDLDPILRSLFGRWRGNMMLRSVPRDQWGEVRVKSAAIEGLQKQKPQYGLNRRWYGDYL 1460
AKAIY+RLF WIV +IN I+ K + + H N VIGVLDIYGFEIFD NSFEQ CINYCNEKLQQLFI+LVLKQEQEEY+RE I W IDYFNN+II DL++QQHKGIIAILD+AC+NVGKVTD+MFL A++ KLG H H+ SR+ S+K L ++DF+I+HYAGDV YS + F+DKNKD LFQDFKRL+YNSS+ +LK+ WPEG IT+VTKRP T AT+FKNSMI+LVDNL K PYYVRCIKPN KSP FD++ HQV YLGL+ENVRVRRAGFAFRQ Y +FL RYK+ TWP +D K+ +I F+ DV +G TKIFI++P+T+F+LEE R + L IVL +QK WRG +R+ +R +AAL ++R +RR++V+ Y+ E+ K +GK++ WP P+ L + L+++F RWR + +++S+P +VR K AA+E L+ Q+ GL R W G+YL
Sbjct: 344 AKAIYERLFCWIVTRINDIIEVKNYDTTIHGKNTVIGVLDIYGFEIFDNNSFEQFCINYCNEKLQQLFIQLVLKQEQEEYQREGIPWKHIDYFNNQIIVDLVEQQHKGIIAILDDACMNVGKVTDEMFLEALNSKLGKHAHFSSRKLCASDKILEFDRDFRIRHYAGDVVYSVIGFIDKNKDTLFQDFKRLMYNSSNPVLKNMWPEGKLSITEVTKRPLTAATLFKNSMIALVDNLASKEPYYVRCIKPNDKKSPQIFDDERCRHQVEYLGLLENVRVRRAGFAFRQTYEKFLHRYKMISEFTWPNHDLPSDKEAVKKLIERCGFQDDVAYGKTKIFIRTPRTLFTLEELRAQMLIRIVLFLQKVWRGTLARMRYKRTKAALTIIRYYRRYKVKSYIHEVARRFHGVKTMRDYGKHVKWPS---PPKVLRRFEEALQTIFNRWRASQLIKSIPASDLPQVRAKVAAVEMLKGQRADLGLQRAWEGNYL 828 The following BLAST results are available for this feature:
BLAST of TCONS_00065261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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