|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065259 ID=TCONS_00065259|Name=TCONS_00065259|organism=Clytia hemisphaerica|type=transcript|length=2696bpRun BLAST on NCBI protein sequence of TCONS_00065259-protein >TCONS_00065259-protein ID=TCONS_00065259-protein|Name=TCONS_00065259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=726bp MLAARRSSKQLYQAALACRYCHQLPGEWSKKASKEMKGAEPKEKLIWKTPRun BLAST on NCBI transcript from alignment at scaffold_435:142353..164605+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065259 ID=TCONS_00065259|Name=TCONS_00065259|organism=Clytia hemisphaerica|type=transcript|length=22253bp|location=Sequence derived from alignment at scaffold_435:142353..164605+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_435:142353..164605+ >TCONS_00065259 ID=TCONS_00065259|Name=TCONS_00065259|organism=Clytia hemisphaerica|type=CDS|length=45801bp|location=Sequence derived from alignment at scaffold_435:142353..164605+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065259 vs. Swiss-Prot (Human)
Match: MUTA (Methylmalonyl-CoA mutase, mitochondrial OS=Homo sapiens GN=MUT PE=1 SV=4) HSP 1 Score: 1073.92 bits (2776), Expect = 0.000e+0 Identity = 517/714 (72.41%), Postives = 597/714 (83.61%), Query Frame = 3
Query: 123 RYCHQ---LPGEWSKKASKEMKGAEPKEKLIWKTPEGINIKPLYTKDDTTDVENETPGSFPFTRGPYATMYTYRPWTIRQYAGFSTVEESNKFYKKNIAAGQQGLSVAFDLPTHRGYDSDNPRVPGDVGMAGVAVDTVEDMKTLFDGIPLDKMSVSMTMNGAVLPVLAMFIVAGEEQGVPAAKLSGTIQNDILKEFMVRNTYIYPPEPSMRIIGDIFQYTSQNMPKFNSISISGYHIQEAGANAVQEMAYTIADGLQYCNTGLKAGMTIDQFAPRLSFFWGVGMNFYMEIAKFRAARRLWAHYIKEKFDAQNPKSLLLRTHSQTSGWSLTEQDPYNNIVRTTIEGMAAVFG------------ALALPTEFSARIARNTQIILQEESGIPNVADPWGGSYMMESLTDEVYNSAKKIIDEIEEMGGMAKAVASGIPKLEIEKSAAKRQARIDSGQETIVGVNKHKLAQEEEVDVLFIENSKVLESQINKLGQIKSSRDXXXXXXXLEAITECARSGEGNLLDLAVKASRERCSVGEISDAMEEVFKRHVASDLSLTGAYKSEFGEDSEISQVIDRVENFSQQVGRRPRLMVAKMGQDGHDRGAKVIATGFADLGFDVDVSPLFQTPMEVAQLAVDADVHAIGASTLAAGHKTLVPELVACLKQLGRDDILVICGGVIPPQDYQYLYDRGVSSIFGPGTRVPQAALTLLENIEDSL 2219
R HQ L EW+ A K++KG P E LIW TPEGI+IKPLY+K DT D+ E PG PFTRGPY TMYT+RPWTIRQYAGFSTVEESNKFYK NI AGQQGLSVAFDL THRGYDSDNPRV GDVGMAGVA+DTVED K LFDGIPL+KMSVSMTMNGAV+PVLA FIV GEEQGVP KL+GTIQNDILKEFMVRNTYI+PPEPSM+II DIF+YT+++MPKFNSISISGYH+QEAGA+A+ E+AYT+ADGL+Y TGL+AG+TID+FAPRLSFFWG+GMNFYMEIAK RA RRLWAH I++ F +N KSLLLR H QTSGWSLTEQDPYNNIVRT IE MAAVFG AL LPT SARIARNTQII+QEESGIP VADPWGGSYMME LT++VY++A K+I+EIEEMGGMAKAVA GIPKL IE+ AA+RQARIDSG E IVGVNK++L +E+ V+VL I+N+ V QI KL +IKSSRD A A+ L A+TECA SG+GN+L LAV ASR RC+VGEI+DA+++VF H A+D ++GAY+ EFGE EI+ I RV F ++ GRRPRL+VAKMGQDGHDRGAKVIATGFADLGFDVD+ PLFQTP EVAQ AVDADVHA+G STLAAGHKTLVPEL+ L LGR DILV+CGGVIPPQDY++L++ GVS++FGPGTR+P+AA+ +L++IE L
Sbjct: 31 RLLHQQQPLHPEWAALAKKQLKGKNP-EDLIWHTPEGISIKPLYSKRDTMDLPEELPGVKPFTRGPYPTMYTFRPWTIRQYAGFSTVEESNKFYKDNIKAGQQGLSVAFDLATHRGYDSDNPRVRGDVGMAGVAIDTVEDTKILFDGIPLEKMSVSMTMNGAVIPVLANFIVTGEEQGVPKEKLTGTIQNDILKEFMVRNTYIFPPEPSMKIIADIFEYTAKHMPKFNSISISGYHMQEAGADAILELAYTLADGLEYSRTGLQAGLTIDEFAPRLSFFWGIGMNFYMEIAKMRAGRRLWAHLIEKMFQPKNSKSLLLRAHCQTSGWSLTEQDPYNNIVRTAIEAMAAVFGGTQSLHTNSFDEALGLPTVKSARIARNTQIIIQEESGIPKVADPWGGSYMMECLTNDVYDAALKLINEIEEMGGMAKAVAEGIPKLRIEECAARRQARIDSGSEVIVGVNKYQLEKEDAVEVLAIDNTSVRNRQIEKLKKIKSSRDQALAERCLAALTECAASGDGNILALAVDASRARCTVGEITDALKKVFGEHKANDRMVSGAYRQEFGESKEITSAIKRVHKFMEREGRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGISTLAAGHKTLVPELIKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKCL 743 The following BLAST results are available for this feature:
BLAST of TCONS_00065259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.