TCONS_00065248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065248
Unique NameTCONS_00065248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length681

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065248 ID=TCONS_00065248|Name=TCONS_00065248|organism=Clytia hemisphaerica|type=transcript|length=681bp
TAGAAAATATTTGAGTCTCAGAGATTTACATAtagttttttagttttgaa
atgATATCCATTGAATCATACCGTGCGTTGATNCGTTGATAGGAGGCTTT
GCCTACACAGCTCAGAGAAATGTGAAGTCAATTTCTAAGTCCATTTTTAT
CGGctccaaattttctaaaaacgCCTTTTCTCGATTATTGAAACCCGTTA
GATTCATAGCACTTTTTACACTTTTAGTCTTTGCAATCCCTAAGTCTTAC
GAAACGGTCGAAATTCAAACACCGCTTGACTTTATGCATTACTCAAAGAA
TGGAATGTTTGTTCAGTATCCAAATGTAGGATCTAATTTACCAGAGCCAg
ctatttttacttttaaagtCAACTATACATTACTATTGTCAGGTGATATA
GAACTTAATCCAGGTCCACCACAGGAAGAGATAAAAAGTATTCAAGGTTC
TTTTCATCAAGGAAATTCAAAGTTTGGCGAGACTGCTGGTATACAATGTT
CGTCCAATTGTTTTTTTGCCATTTGCTATGCACAGCTTCGAAAATTATCA
CTTTGGAAGACTCGTGATTTGGATTATGTTTTGAATCAAGGAgatctaaa
ttttaaaaatcttggcATCACTAGACAGTCACCATTAATTGAAGAATTCC
AGAGAGTTATTGCAGTCGGAAATAGTATCTG
Run BLAST on NCBI

protein sequence of TCONS_00065248-protein

>TCONS_00065248-protein ID=TCONS_00065248-protein|Name=TCONS_00065248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MHYSKNGMFVQYPNVGSNLPEPAIFTFKVNYTLLLSGDIELNPGPPQEEI
KSIQGSFHQGNSKFGETAGIQCSSNCFFAICYAQLRKLSLWKTRDLDYVL
NQGDLNFKNLGITRQSPLIEEFQRVIAVGNSI
Run BLAST on NCBI

transcript from alignment at scaffold_434:18403..19083

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065248 ID=TCONS_00065248|Name=TCONS_00065248|organism=Clytia hemisphaerica|type=transcript|length=681bp|location=Sequence derived from alignment at scaffold_434:18403..19083 (Clytia hemisphaerica)
CAGATACTATTTCCGACTGCAATAACTCTCTGGAATTCTTCAATTAATGG
TGACTGTCTAGTGATgccaagatttttaaaatttagatcTCCTTGATTCA
AAACATAATCCAAATCACGAGTCTTCCAAAGTGATAATTTTCGAAGCTGT
GCATAGCAAATGGCAAAAAAACAATTGGACGAACATTGTATACCAGCAGT
CTCGCCAAACTTTGAATTTCCTTGATGAAAAGAACCTTGAATACTTTTTA
TCTCTTCCTGTGGTGGACCTGGATTAAGTTCTATATCACCTGACAATAGT
AATGTATAGTTGactttaaaagtaaaaatagcTGGCTCTGGTAAATTAGA
TCCTACATTTGGATACTGAACAAACATTCCATTCTTTGAGTAATGCATAA
AGTCAAGCGGTGTTTGAATTTCGACCGTTTCGTAAGACTTAGGGATTGCA
AAGACTAAAAGTGTAAAAAGTGCTATGAATCTAACGGGTTTCAATAATCG
AGAAAAGGcgtttttagaaaatttggagCCGATAAAAATGGACTTAGAAA
TTGACTTCACATTTCTCTGAGCTGTGTAGGCAAAGCCTCCTATCAACGNA
TCAACGCACGGTATGATTCAATGGATATcatttcaaaactaaaaaactaT
ATGTAAATCTCTGAGACTCAAATATTTTCTA

Coding sequence (CDS) from alignment at scaffold_434:18403..19083

>TCONS_00065248 ID=TCONS_00065248|Name=TCONS_00065248|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_434:18403..19083 (Clytia hemisphaerica)
GATACTATTTCCGACTGCAATAACTCTCTGGAATTCTTCAATTAATGGTG
ACTGTCTAGTGATgccaagatttttaaaatttagatcTCCTTGATTCAAA
ACATAATCCAAATCACGAGTCTTCCAAAGTGATAATTTTCGAAGCTGTGC
ATAGCAAATGGCAAAAAAACAATTGGACGAACATTGTATACCAGCAGTCT
CGCCAAACTTTGAATTTCCTTGATGAAAAGAACCTTGAATACTTTTTATC
TCTTCCTGTGGTGGACCTGGATTAAGTTCTATATCACCTGACAATAGTAA
TGTATAGTTGactttaaaagtaaaaatagcTGGCTCTGGTAAATTAGATC
CTACATTTGGATACTGAACAAACATTCCATTCTTTGAGTAATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040909XLOC_040909Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065248-proteinTCONS_00065248-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065248-exon-scaffold_434-1491911889:18403..19083TCONS_00065248-exon-scaffold_434-1491911889:18403..19083Clytia hemisphaericaexon
TCONS_00065248-exon-scaffold_434-1510915933:18403..19083TCONS_00065248-exon-scaffold_434-1510915933:18403..19083Clytia hemisphaericaexon
TCONS_00065248-exon-scaffold_434-1575043694:18403..19083TCONS_00065248-exon-scaffold_434-1575043694:18403..19083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_434supercontigscaffold_434:18403..19083 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84055	2.71651	4.33445	2.98162	1.04527	1.5824	1.11563	0.906363	0.224078	0.335284	0.304608	0.754153	0.349928	0.645395	0.5778	0.330402	0.514039	0.235178	0.285048	0.218585	0.564576	0.627812	0	0.369758	0.206148	0.625993	0.589507	2.0997	0.842306	1.80295
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006928htUSP_central_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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