TCONS_00065247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065247
Unique NameTCONS_00065247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065247 ID=TCONS_00065247|Name=TCONS_00065247|organism=Clytia hemisphaerica|type=transcript|length=653bp
GGCAGGTGGTAACCCTGTTGCTGGGTGTGGGGTCTGACGGTAGGTCTTCA
ATGCTTCCCTTAGAGCCTCAGCCTCATTTTTGgtagtgcggttattaatt
ttcatAGTTTTCCCAATCGTTTTCATGAACGTCTCCGCCGGATTTTGGCT
TGGGAAATGGGGTGAAGAGAATCTTGTGTTTGTCCCATGACTATCAGTGA
AGGCcttcatttttttgctgttgAAGGGAGGCCCATTGTCCGAGATTTGG
GTTTCTGGGTAGCCATACTCGTCGTATATTTCTCCTAGCGCTGGAATAAC
CTTATCAGCTTTTGTGGACGAAACTAGTTTGGCAGCAGGGTATCTAGACC
CTATATCCTGTACAATCACTACATGCTTTGATGATGGCATTGGGCCGAAC
AGGTCCACAGCTACGGTCTCCCAGCATCGCTCAGGCACTTTATGGCCAGT
TATAGgctcttttgttttcttgtCGACAAATATGGCACATTCATTGCATT
CGGAGACGAAACTTTTAACTTTGTTGAACATATCatgaaagaaaaagtga
aatctAAGTCTTCGTTCAATTCCGCTTCGACCGGGATGCGAACCTCTATG
TGCAAGACTAATGGCCACATCGTGTAACGATTTTGGCAGAACGATTCGAT
CTT
Run BLAST on NCBI

protein sequence of TCONS_00065247-protein

>TCONS_00065247-protein ID=TCONS_00065247-protein|Name=TCONS_00065247-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
DRIVLPKSLHDVAISLAHRGSHPGRSGIERRLRFHFFFHDMFNKVKSFVS
ECNECAIFVDKKTKEPITGHKVPERCWETVAVDLFGPMPSSKHVVIVQDI
GSRYPAAKLVSSTKADKVIPALGEIYDEYGYPETQISDNGPPFNSKKMKA
FTDSHGTNTRFSSPHFPSQNPAETFMKTIGKTMKINNRTTKNEAEALREA
LKTYRQTPHPATGLPPA
Run BLAST on NCBI

transcript from alignment at scaffold_434:6137..6789

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065247 ID=TCONS_00065247|Name=TCONS_00065247|organism=Clytia hemisphaerica|type=transcript|length=653bp|location=Sequence derived from alignment at scaffold_434:6137..6789 (Clytia hemisphaerica)
AAGATCGAATCGTTCTGCCAAAATCGTTACACGATGTGGCCATTAGTCTT
GCACATAGAGGTTCGCATCCCGGTCGAAGCGGAATTGAACGAAGACTTag
atttcactttttctttcatGATATGTTCAACAAAGTTAAAAGTTTCGTCT
CCGAATGCAATGAATGTGCCATATTTGTCGacaagaaaacaaaagagcCT
ATAACTGGCCATAAAGTGCCTGAGCGATGCTGGGAGACCGTAGCTGTGGA
CCTGTTCGGCCCAATGCCATCATCAAAGCATGTAGTGATTGTACAGGATA
TAGGGTCTAGATACCCTGCTGCCAAACTAGTTTCGTCCACAAAAGCTGAT
AAGGTTATTCCAGCGCTAGGAGAAATATACGACGAGTATGGCTACCCAGA
AACCCAAATCTCGGACAATGGGCCTCCCTTcaacagcaaaaaaatgaagG
CCTTCACTGATAGTCATGGGACAAACACAAGATTCTCTTCACCCCATTTC
CCAAGCCAAAATCCGGCGGAGACGTTCATGAAAACGATTGGGAAAACTat
gaaaattaataaccgcactacCAAAAATGAGGCTGAGGCTCTAAGGGAAG
CATTGAAGACCTACCGTCAGACCCCACACCCAGCAACAGGGTTACCACCT
GCC

Coding sequence (CDS) from alignment at scaffold_434:6137..6789

>TCONS_00065247 ID=TCONS_00065247|Name=TCONS_00065247|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_434:6137..6789 (Clytia hemisphaerica)
GATCGAATCGTTCTGCCAAAATCGTTACACGATGTGGCCATTAGTCTTGC
ACATAGAGGTTCGCATCCCGGTCGAAGCGGAATTGAACGAAGACTTagat
ttcactttttctttcatGATATGTTCAACAAAGTTAAAAGTTTCGTCTCC
GAATGCAATGAATGTGCCATATTTGTCGacaagaaaacaaaagagcCTAT
AACTGGCCATAAAGTGCCTGAGCGATGCTGGGAGACCGTAGCTGTGGACC
TGTTCGGCCCAATGCCATCATCAAAGCATGTAGTGATTGTACAGGATATA
GGGTCTAGATACCCTGCTGCCAAACTAGTTTCGTCCACAAAAGCTGATAA
GGTTATTCCAGCGCTAGGAGAAATATACGACGAGTATGGCTACCCAGAAA
CCCAAATCTCGGACAATGGGCCTCCCTTcaacagcaaaaaaatgaagGCC
TTCACTGATAGTCATGGGACAAACACAAGATTCTCTTCACCCCATTTCCC
AAGCCAAAATCCGGCGGAGACGTTCATGAAAACGATTGGGAAAACTatga
aaattaataaccgcactacCAAAAATGAGGCTGAGGCTCTAAGGGAAGCA
TTGAAGACCTACCGTCAGACCCCACACCCAGCAACAGGGTTACCACCTGC
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040908XLOC_040908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065247-exon-scaffold_434-1491911889:6137..6789TCONS_00065247-exon-scaffold_434-1491911889:6137..6789Clytia hemisphaericaexon
TCONS_00065247-exon-scaffold_434-1510915933:6137..6789TCONS_00065247-exon-scaffold_434-1510915933:6137..6789Clytia hemisphaericaexon
TCONS_00065247-exon-scaffold_434-1575043694:6137..6789TCONS_00065247-exon-scaffold_434-1575043694:6137..6789Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065247-proteinTCONS_00065247-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_434supercontigscaffold_434:6137..6789 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.719143	0.999086	1.71532	1.3328	0.145306	0	0.262203	0.367275	0.0967708	0.250213	0.562622	0.638594	0.396752	0.342573	0.189608	0.136062	0.172684	0.176996	0	0.355537	0.0772565	0.280048	0.342001	0.37482	0.553658	1.00353	0.203145	0.233862	0.117042	0.32238
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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