TCONS_00065244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065244
Unique NameTCONS_00065244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065244 ID=TCONS_00065244|Name=TCONS_00065244|organism=Clytia hemisphaerica|type=transcript|length=654bp
aaaattcaTACCATTAATCGCCAAAAAGAGAGTTGGGGGCACAGGTTTAC
TTTCACCCTACTGATGAGTACGGTTGTTGCAATGTTATTTTTACTCAGta
cgagaggaaccgcagattggcatttgcacttgcttgaaaaggcaatggtg
cgaagctaccatctgttggGCGCCGAAATCataatattttgggattttgc
CTCCCCAGTTTACCCAAATTTTTGTCGATCCCCCCCCCACGCTACTGTTT
TCTTGTGACCAAGTTTAATTAATTGATCGTTAAGTAACATAAGAGACAAA
GAATTTTAAACACAACGATTTCTTCAGACAAACGTCTTGATTAcacaatt
aaaaaaagttaattacattttcccaaaaaaatataTCAGCAGTCTGCGCT
TGATAcgcccattgagtttaaagcgcGAAGGgatagagtagaatctctaa
cctatCCCAGGCACTTATAGTGCTGTGAACCCTATCTTAACTTAGGGTCT
ATTCCCTGTGCTATGGGAAGGTTCACCTCCTCATGGAGGAGTCTTCttat
ccaggagtctcgagtctagcccttcgggcttagaagTCAATGGATACGCC
CGTCGAATTAAAACTGGAAACACTGACAACAACCTTTTTTTCGGCAGAAA
GCCC
Run BLAST on NCBI

transcript from alignment at scaffold_433:530630..531283

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065244 ID=TCONS_00065244|Name=TCONS_00065244|organism=Clytia hemisphaerica|type=transcript|length=654bp|location=Sequence derived from alignment at scaffold_433:530630..531283 (Clytia hemisphaerica)
GGGCTTTCTGCCGAAAAAAAGGTTGTTGTCAGTGTTTCCAGTTTTAATTC
GACGGGCGTATCCATTGActtctaagcccgaagggctagactcgagactc
ctggataaGAAGACTCCTCCATGAGGAGGTGAACCTTCCCATAGCACAGG
GAATAGACCCTAAGTTAAGATAGGGTTCACAGCACTATAAGTGCCTGGGa
taggttagagattctactctatcCCTTCgcgctttaaactcaatgggcgT
ATCAAGCGCAGACTGCTGAtatatttttttgggaaaatgtaattaacttt
ttttaattgtgTAATCAAGACGTTTGTCTGAAGAAATCGTTGTGTTTAAA
ATTCTTTGTCTCTTATGTTACTTAACGATCAATTAATTAAACTTGGTCAC
AAGAAAACAGTAGCGTGGGGGGGGGATCGACAAAAATTTGGGTAAACTGG
GGAGgcaaaatcccaaaatattatGATTTCGGCGCccaacagatggtagc
ttcgcaccattgccttttcaagcaagtgcaaatgccaatctgcggttcct
ctcgtaCTGAGTAAAAATAACATTGCAACAACCGTACTCATCAGTAGGGT
GAAAGTAAACCTGTGCCCCCAACTCTCTTTTTGGCGATTAATGGTAtgaa
tttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040905XLOC_040905Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065244-exon-scaffold_433-1491911889:530630..531283TCONS_00065244-exon-scaffold_433-1491911889:530630..531283Clytia hemisphaericaexon
TCONS_00065244-exon-scaffold_433-1510915933:530630..531283TCONS_00065244-exon-scaffold_433-1510915933:530630..531283Clytia hemisphaericaexon
TCONS_00065244-exon-scaffold_433-1575043694:530630..531283TCONS_00065244-exon-scaffold_433-1575043694:530630..531283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:530630..531283 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
311.088	439.024	812.873	851.348	50.8541	561.664	132.327	33.2977	315.76	478.83	1650.18	441.604	292.368	506.209	518.439	256.077	1324.11	384.687	1499.73	176.039	211.361	259.429	319.209	222.725	61.8014	59.1287	444.273	770.011	296.792	391.638
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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